Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003579

Physical Location & Seq

Genomic Coordinates Forward (+)

12186315 .. 12189678

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCCTAATCTCCTCCTCGCAAACCCTAACCCTAAGATCCACTTCTCCAACCCTCTCTCATCCTTCTCATCCATCTCACTTCGCTATTTCCCAATCACCACCTAGCAATCCTCACTCTCTCTCCCTCTTCTACTCCCCGAAATCAACGACACAGTTTAGCGCTAGACGACTTGTCGTTCCTAGAGCCTCCTCAAACGAGAGCACCGCCGTGGATTTCAACCCCAGTATCGGTGAGATCCTCGGCGACGTTAGCATTTTCACCGCCGCTGGTGATTCCGTCCAGTTCAAAGACCTCTTGGTTCCGAACGAGGGGGTGGCTGTTGTTGCACTATTGAGGCACTTCGGATGCGTTTGCTGTTGGGAACTTGCTGCATCTTTGAAAGAAAATAAAGCTAGATTCGACTCAGCTGGTGTCAAACTAATTGCAGTCGGTGTTGGTACTCCTGATAAAGCTCGTATCCTTGCTGAACGGTTACCATTTCCAATGGATAGCCTTTATGCTGATCCTGATCGCAAGGCATACGATGTTTTAGGATTATACTATGGACTTGGACGAACCTTCTTCAATCCAGCTAGTGCAAAGGTATTTTCAAGATTTGAGGCTTTTCAGAAAGCTTTGAAGAATTATACCATTGAAGCCACTCCAGAGGACAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAATTGTTGTATGGTCGGAAAGACGAAGGGACAGGTGATCATGCCCCTTTAGATGATATCTTCGATGTTTGCTGCAAAGTTCCCGTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AhpC-TSA_2

Protein Analysis

265

Amino Acids

28.66

Weight (kDa)

7.66

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65840
fragaria_vesca	FvH4_1g18230 FvH4_1g18230 FvH4_1g18250 FvH4_1g18251
malus_domestica	MD02G1189600.v1.1
prunus_persica	Prupe.6G216800_v2.0.a1
pyrus_communis	pycom02g15370
rosa_chinensis	RchiOBHm_Chr2g0108751 RchiOBHm_Chr2g0108761 RchiOBHm_Chr2g0108771
rosa_laevigata	RLG00000017689 RLG00000017690
rosa_multiflora	Rmu_co8430739.1_g000001 Rmu_sc0009410.1_g000001 Rmu_sc0010317.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134820 Rroxscaffold_2G00134830 Rroxscaffold_2G00134840
rosa_rugosa	Rorug02G0155400 Rorug02G0155400 Rorug02G0155700 Rorug02G0155800
rosa_samantha	Rh2AG205700 Rh2AG205900 Rh2AG206000 Rh2BG217500 Rh2CG208600 Rh2CG208900 Rh2DG211900 Rh2DG212300 Rh2DG212400
rosa_wichuraiana	Rw2G016370 Rw2G016390 Rw2G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	207, 264, 267
AclWI	GGATC	3 cut(s)	33, 232, 500
AfaI	GTAC	1 cut(s)	442
AfeI	AGCGCT	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	230, 311
AgsI	TTSAA	8 cut(s)	220, 289, 382, 568, 594, 622, 638, 694
AhdI	GACNNNNNGTC	1 cut(s)	173
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	5 cut(s)	395, 410, 455, 575, 617
AluI	AGCT	5 cut(s)	395, 410, 455, 575, 617
Alw21I	GWGCWC	1 cut(s)	206
AlwI	GGATC	3 cut(s)	33, 232, 500
Aor51HI	AGCGCT	1 cut(s)	163
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	371, 774
ArsI	GACNNNNNNTTYG	1 cut(s)	771
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	5 cut(s)	90, 245, 253, 284, 749
BaeI	ACNNNNGTAYC	2 cut(s)	211, 244
BbsI	GAAGAC	1 cut(s)	682
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	358, 761
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	470
BclI	TGATCA	1 cut(s)	739
BfaI	CTAG	5 cut(s)	105, 165, 183, 396, 576
BfoI	RGCGCY	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	3 cut(s)	267, 372, 775
BlsI	GCNGC	3 cut(s)	268, 373, 776
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	338, 383
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	682
BpmI	CTGGAG	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	210, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 311
Bse1I	ACTGG	2 cut(s)	225, 283
Bse8I	GATNNNNATC	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	210, 241
BseGI	GGATG	4 cut(s)	61, 70, 353, 687
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	230, 311
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	225, 283
BseRI	GAGGAG	3 cut(s)	4, 7, 181
BseXI	GCAGC	2 cut(s)	358, 761
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	745
BslI	CCNNNNNNNGG	2 cut(s)	230, 311
BsmFI	GGGAC	1 cut(s)	745
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	5 cut(s)	38, 237, 505, 511, 739
BspACI	CCGC	3 cut(s)	207, 264, 267
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	33, 232, 500
BsrI	ACTGG	2 cut(s)	225, 283
BssECI	CCNNGG	2 cut(s)	210, 241
BssMI	GATC	5 cut(s)	38, 237, 505, 511, 739
Bst4CI	ACNGT	2 cut(s)	156, 474
Bst6I	CTCTTC	1 cut(s)	134
BstDEI	CTNAG	2 cut(s)	35, 406
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	474
BstF5I	GGATG	4 cut(s)	61, 70, 353, 687
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	41, 240, 508, 514, 742
BstMBI	GATC	5 cut(s)	38, 237, 505, 511, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 326
BstPI	GGTNACC	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	358, 761
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	2 cut(s)	38, 237
BstYI	RGATCY	2 cut(s)	38, 237
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	61, 70, 353, 687
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	1 cut(s)	743
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	35, 406
DpnI	GATC	5 cut(s)	40, 239, 507, 513, 741
DpnII	GATC	5 cut(s)	38, 237, 505, 511, 739
DriI	GACNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	760
Eco47III	AGCGCT	1 cut(s)	163
Eco91I	GGTNACC	1 cut(s)	474
EcoO65I	GGTNACC	1 cut(s)	474
EcoRV	GATATC	1 cut(s)	760
FaeI	CATG	1 cut(s)	746
FaiI	YATR	8 cut(s)	501, 523, 541, 546, 630, 714, 744, 793
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	1 cut(s)	742
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	3 cut(s)	267, 372, 775
FokI	GGATG	4 cut(s)	48, 57, 360, 694
Fsp4HI	GCNGC	3 cut(s)	267, 372, 775
FspBI	CTAG	5 cut(s)	105, 165, 183, 396, 576
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	267, 372, 775
GsuI	CTGGAG	1 cut(s)	630
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	746
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	615
HinfI	GANTC	3 cut(s)	275, 399, 404
HphI	GGTGA	5 cut(s)	90, 245, 253, 284, 749
Hpy188I	TCNGA	4 cut(s)	306, 347, 612, 720
Hpy188III	TCNNGA	4 cut(s)	446, 509, 594, 647
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	75, 571, 722
HpyCH4III	ACNGT	2 cut(s)	156, 474
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	329, 374, 428, 581, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 326
HpyF3I	CTNAG	2 cut(s)	35, 406
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	746
HspAI	GCGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	5 cut(s)	38, 237, 505, 511, 739
Lsp1109I	GCAGC	2 cut(s)	358, 761
LweI	GCATC	2 cut(s)	338, 383
MaeI	CTAG	5 cut(s)	105, 165, 183, 396, 576
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	2 cut(s)	474, 666
MalI	GATC	5 cut(s)	40, 239, 507, 513, 741
MboI	GATC	5 cut(s)	38, 237, 505, 511, 739
MboII	GAAGA	5 cut(s)	121, 556, 634, 682, 754
MfeI	CAATTG	1 cut(s)	704
MflI	RGATCY	2 cut(s)	38, 237
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	3 cut(s)	423, 625, 704
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	2 cut(s)	74, 698
MslI	CAYNNNNRTG	1 cut(s)	209
MspA1I	CMGCKG	2 cut(s)	269, 410
MunI	CAATTG	1 cut(s)	704
MwoI	GCNNNNNNNGC	2 cut(s)	252, 326
NdeII	GATC	5 cut(s)	38, 237, 505, 511, 739
NlaIII	CATG	1 cut(s)	746
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	222
OliI	CACNNNNGTG	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	275, 399
PkrI	GCNGC	3 cut(s)	268, 373, 776
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PspEI	GGTNACC	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	38, 237
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	209
SatI	GCNGC	3 cut(s)	267, 372, 775
Sau3AI	GATC	5 cut(s)	38, 237, 505, 511, 739
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	2 cut(s)	338, 383
SmiMI	CAYNNNNRTG	1 cut(s)	209
Sse9I	AATT	3 cut(s)	423, 625, 704
SsiI	CCGC	3 cut(s)	207, 264, 267
SspMI	CTAG	5 cut(s)	105, 165, 183, 396, 576
TaaI	ACNGT	2 cut(s)	156, 474
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	402, 765
TasI	AATT	3 cut(s)	423, 625, 704
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	2 cut(s)	275, 399
TseI	GCWGC	2 cut(s)	371, 774
TspGWI	ACGGA	1 cut(s)	268
XspI	CTAG	5 cut(s)	105, 165, 183, 396, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.