Rh2CG208900

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003579
Physical Location & Seq
Forward (+)
20394208 .. 20394922
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG208900.1

Sequence Viewer

Length: 432 bp
ATGTCCAAAGCAATTCTGCAATTTCCTTGTCATATACTTGATACTGATTCCATGAACTGCTTACTGATTCCTGGAGCTCTTATTATTTTCCTTTTGATGTTCTATATACAGTTACCATTTCCCATGGATTCCCTCTATGCCGATACTGATCGTAAGGCGTATGATGTTTTGGGCTTATACTATGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTGTCAAGATTTGATGCTCTGCAGAAAGCTGTCAAAAACTATACCATTGAAGCCACTCCAGATGATAGAAGTAGTGTGTTACAACAGGGAGGGATGTTTGTCTTCAAAGGTAAGCAGCTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCTCCCTTGGATGATATCTTAAATGTTTGCTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

143

Amino Acids

15.97

Weight (kDa)

6.05

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 40 - 122 1.2e-11 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 205, 275, 331
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 4 cut(s) 77, 212, 254, 343
AluI AGCT 4 cut(s) 77, 212, 254, 343
Alw21I GWGCWC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 340, 411
ArsI GACNNNNNNTTYG 3 cut(s) 212, 244, 408
AsuHPI GGTGA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 352, 398
BciT130I CCWGG 1 cut(s) 72
BclI TGATCA 1 cut(s) 376
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 245
BisI GCNGC 2 cut(s) 341, 412
BlsI GCNGC 2 cut(s) 342, 413
Bme1390I CCNGG 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 2 cut(s) 93, 267
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 123, 387
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 123, 387
BseGI GGATG 2 cut(s) 324, 397
BseJI GATNNNNATC 1 cut(s) 147
BseXI GCAGC 2 cut(s) 352, 398
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 148, 376
Bsp19I CCATGG 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 123, 387
BssMI GATC 2 cut(s) 148, 376
BssT1I CCWWGG 2 cut(s) 123, 387
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 324, 397
BstKTI GATC 2 cut(s) 151, 379
BstMBI GATC 2 cut(s) 148, 376
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 245
BstV1I GCAGC 2 cut(s) 352, 398
BstV2I GAAGAC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 2 cut(s) 324, 397
CviAII CATG 3 cut(s) 52, 124, 380
CviJI RGCY 6 cut(s) 77, 174, 212, 254, 278, 343
CviKI_1 RGCY 6 cut(s) 77, 174, 212, 254, 278, 343
DpnI GATC 2 cut(s) 150, 378
DpnII GATC 2 cut(s) 148, 376
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 123, 387
Eco24I GRGCYC 1 cut(s) 79
Eco32I GATATC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 2 cut(s) 123, 387
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 2 cut(s) 123, 387
FaeI CATG 3 cut(s) 55, 127, 383
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 51, 123, 379
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 2 cut(s) 341, 412
FokI GGATG 2 cut(s) 331, 404
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 341, 412
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 341, 412
GsuI CTGGAG 2 cut(s) 93, 267
Hin1II CATG 3 cut(s) 55, 127, 383
HinfI GANTC 3 cut(s) 47, 67, 128
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 3 cut(s) 231, 284, 429
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 4 cut(s) 19, 218, 247, 414
Hsp92II CATG 3 cut(s) 55, 127, 383
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 2 cut(s) 148, 376
LmnI GCTCC 2 cut(s) 74, 388
LpnPI CCDG 6 cut(s) 57, 84, 222, 296, 297, 357
Lsp1109I GCAGC 2 cut(s) 352, 398
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 2 cut(s) 111, 303
MalI GATC 2 cut(s) 150, 378
MboI GATC 2 cut(s) 148, 376
MboII GAAGA 2 cut(s) 193, 319
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 2 cut(s) 12, 20
MnlI CCTC 2 cut(s) 143, 308
MseI TTAA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 123
NdeII GATC 2 cut(s) 148, 376
NlaIII CATG 3 cut(s) 55, 127, 383
PfeI GAWTC 3 cut(s) 47, 67, 128
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 2 cut(s) 342, 413
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PstI CTGCAG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 2 cut(s) 341, 412
Sau3AI GATC 2 cut(s) 148, 376
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 79, 214, 225, 256, 337, 345, 376
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 245
Sse9I AATT 2 cut(s) 12, 20
SspMI CTAG 1 cut(s) 213
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 2 cut(s) 123, 387
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 12, 20
TfiI GAWTC 3 cut(s) 47, 67, 128
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 2 cut(s) 340, 411
TspDTI ATGAA 1 cut(s) 68
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.