RchiOBHm_Chr2g0108751

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003579
Physical Location & Seq
Forward (+)
20127077 .. 20129626
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48261

Sequence Viewer

Length: 762 bp
ATGGCCCTAATCTCCACACAAACCCTAACCCTGAAATCCCCTCTTAACCTTTCTCTTCCTTCTCATCCATCTTCCCAATCTTTCTCACTCTCACCATCCACTCCTCACTCCTCACCACCAACAGCACGGTTTAGTGCTAGACGACTTGGCCTTTCCAGAGCCACCACATCCTCTGCTTTGGATTTCAGCCCCAGCATCGGTGAGGTCCTCGGTGAAGTTGGTATCTTCACCGCTGCTGGTGATCCCGTCCGGTTCAACGATCTATTGGATCAAAACGAGGGGATAGTTGTTGTTGCGCTATTGAGGCACTTTGGATGCGTTTGCTGTTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCTAGATTTGACTCAGCTGGTGTGAAACTAATCGCGGTCGGTGTTGGCACTCCTGATAAAGCTCGCATCCTTGCAGAACGGTTACCATTTCCCATGGATTCCCTTTATGCCGATCCTGATCGTAAGGCATATGATGTTTTGGGCTTATACTTTGGATTGGGTCGAACATTCTTCAATCCAGCTAGTGCAAAGGTGTTCTCAAGAATTGAGGCCCTGCAGAAAGCTTTAAAGAACTATACGATTAAAGCCACTCCAGATGATATAAATAGTGTGTTACAACAGGGTGGGATGTTCGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACGAAGGGACAGGTGATCATGCCCCATTAGATGATATCTTTGATGTTTGTTGCAAAGTTCCTGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

253

Amino Acids

27.25

Weight (kDa)

8.24

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 116 - 232 4.1e-19 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 395
AciI CCGC 2 cut(s) 231, 395
AclWI GGATC 3 cut(s) 236, 276, 467
AcuI CTGAAG 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 3 cut(s) 256, 535, 661
AluBI AGCT 6 cut(s) 344, 362, 377, 422, 542, 584
AluI AGCT 6 cut(s) 344, 362, 377, 422, 542, 584
AlwI GGATC 3 cut(s) 236, 276, 467
AoxI GGCC 3 cut(s) 3, 148, 570
ApeKI GCWGC 1 cut(s) 233
ArsI GACNNNNNNTTYG 1 cut(s) 738
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 4, 205, 571
AsuHPI GGTGA 7 cut(s) 84, 105, 212, 220, 224, 251, 716
AvaII GGWCC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 649
BbvI GCAGC 1 cut(s) 220
BccI CCATC 2 cut(s) 76, 103
BclI TGATCA 1 cut(s) 706
BfaI CTAG 3 cut(s) 138, 363, 543
BfmI CTRYAG 1 cut(s) 575
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 4, 205, 571
BmsI GCATC 3 cut(s) 204, 305, 435
BpiI GAAGAC 1 cut(s) 649
BpmI CTGGAG 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 544
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 208, 453
BsaWI WCCGGW 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 208, 453
BseGI GGATG 6 cut(s) 64, 95, 167, 320, 426, 654
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 2 cut(s) 93, 100
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 395
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 3 cut(s) 5, 150, 572
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 712
BsnI GGCC 3 cut(s) 5, 150, 572
Bsp143I GATC 6 cut(s) 241, 259, 268, 472, 478, 706
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 231, 395
BspANI GGCC 3 cut(s) 5, 150, 572
BspCNI CTCAG 1 cut(s) 386
BspFNI CGCG 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 579
BspPI GGATC 3 cut(s) 236, 276, 467
BssECI CCNNGG 2 cut(s) 208, 453
BssMI GATC 6 cut(s) 241, 259, 268, 472, 478, 706
BssT1I CCWWGG 1 cut(s) 453
Bst4CI ACNGT 2 cut(s) 129, 441
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 453
BstEII GGTNACC 1 cut(s) 441
BstF5I GGATG 6 cut(s) 64, 95, 167, 320, 426, 654
BstFNI CGCG 1 cut(s) 395
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 6 cut(s) 244, 262, 271, 475, 481, 709
BstMBI GATC 6 cut(s) 241, 259, 268, 472, 478, 706
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstPI GGTNACC 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 5, 150, 572
BtgI CCRYGG 1 cut(s) 453
BtsCI GGATG 6 cut(s) 64, 95, 167, 320, 426, 654
Cac8I GCNNGC 1 cut(s) 424
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 4, 205, 571
CviAII CATG 2 cut(s) 454, 710
DdeI CTNAG 1 cut(s) 373
DpnI GATC 6 cut(s) 243, 261, 270, 474, 480, 708
DpnII GATC 6 cut(s) 241, 259, 268, 472, 478, 706
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 453
Eco32I GATATC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 441
EcoO109I RGGNCCY 2 cut(s) 205, 571
EcoO65I GGTNACC 1 cut(s) 441
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
FaeI CATG 2 cut(s) 457, 713
FaiI YATR 9 cut(s) 455, 468, 490, 492, 508, 597, 623, 681, 711
FaqI GGGAC 1 cut(s) 712
FatI CATG 2 cut(s) 453, 709
FauNDI CATATG 1 cut(s) 490
FbaI TGATCA 1 cut(s) 706
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 6 cut(s) 51, 82, 154, 327, 413, 661
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 138, 363, 543
GlaI GCGC 1 cut(s) 297
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 3 cut(s) 5, 150, 572
HapII CCGG 1 cut(s) 250
HhaI GCGC 1 cut(s) 298
Hin1II CATG 2 cut(s) 457, 713
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 582
HinfI GANTC 3 cut(s) 353, 371, 458
HpaII CCGG 1 cut(s) 250
HphI GGTGA 7 cut(s) 84, 105, 212, 220, 224, 251, 716
Hpy188I TCNGA 1 cut(s) 687
Hpy188III TCNNGA 6 cut(s) 156, 413, 476, 561, 614, 759
HpyAV CCTTC 2 cut(s) 69, 689
HpyCH4III ACNGT 2 cut(s) 129, 441
HpyCH4V TGCA 4 cut(s) 434, 548, 577, 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 2 cut(s) 457, 713
HspAI GCGC 1 cut(s) 296
Ksp22I TGATCA 1 cut(s) 706
Kzo9I GATC 6 cut(s) 241, 259, 268, 472, 478, 706
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 3 cut(s) 204, 305, 435
MaeI CTAG 3 cut(s) 138, 363, 543
MaeIII GTNAC 2 cut(s) 441, 633
MalI GATC 6 cut(s) 243, 261, 270, 474, 480, 708
MboI GATC 6 cut(s) 241, 259, 268, 472, 478, 706
MboII GAAGA 5 cut(s) 47, 63, 217, 523, 649
MluCI AATT 1 cut(s) 564
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 9 cut(s) 51, 114, 121, 181, 196, 218, 271, 297, 562
MseI TTAA 3 cut(s) 45, 587, 603
MspA1I CMGCKG 2 cut(s) 233, 377
MspI CCGG 1 cut(s) 250
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 304
NcoI CCATGG 1 cut(s) 453
NdeI CATATG 1 cut(s) 490
NdeII GATC 6 cut(s) 241, 259, 268, 472, 478, 706
NlaIII CATG 2 cut(s) 457, 713
PfeI GAWTC 2 cut(s) 353, 458
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 205
PspEI GGTNACC 1 cut(s) 441
PspFI CCCAGC 1 cut(s) 191
PspPI GGNCC 3 cut(s) 4, 205, 571
PspPPI RGGWCCY 1 cut(s) 205
PstI CTGCAG 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 377
SaqAI TTAA 3 cut(s) 45, 587, 603
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 6 cut(s) 241, 259, 268, 472, 478, 706
Sau96I GGNCC 3 cut(s) 4, 205, 571
SchI GAGTC 1 cut(s) 365
SfaNI GCATC 3 cut(s) 204, 305, 435
SfcI CTRYAG 1 cut(s) 575
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 1 cut(s) 564
SsiI CCGC 2 cut(s) 231, 395
SspMI CTAG 3 cut(s) 138, 363, 543
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 129, 441
TaqI TCGA 1 cut(s) 523
TasI AATT 1 cut(s) 564
TfiI GAWTC 2 cut(s) 353, 458
Tru1I TTAA 3 cut(s) 45, 587, 603
Tru9I TTAA 3 cut(s) 45, 587, 603
TseI GCWGC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 205
XspI CTAG 3 cut(s) 138, 363, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.