FvH4_1g18251

Thioredoxin-like protein AAED1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003579
Physical Location & Seq
Forward (+)
10624462 .. 10627003
2542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18251.t1

Sequence Viewer

Length: 600 bp
ATGACCTCTGCTTTGGATATCAGCCCCAACATCAGTGATGTCCTCGGCGACGTTACCATTTTCACTGCTGCTGGAGACGCCGTCCAGTTCAAGGACCTCTGGGACCAGAACGAGGGGGTGGCTGTTGTTGCACTATTGAGGCACTTTGGATGCCCTTGCAGTTGGGAACTTGCTTCAACTCTAAAAGAATCCAAAGCAAAATTTGACTCAGCTGGAGTGAAACTAATTGCTGTTGGTGTTGGTACCCCTGATAGAGCTCGTGTCCTTGCAAAACGGTTACCTTTTCCCATGGACTCCCTTTATGCTGATCCTGATCGTAAGGCGTATGATACTTTGGGTTTATACTATGGATGGGGTCGAACATTCTTCAATCCAGCCATTATCGCAAAGATGTTGTCAAGATTTGGTGCTCTGCGGAAAGCTGTAGAAAACTATACGATTAGAGCCACTCCAGATGATAGAAGTGGTGTGTTGCAACAGGGAGGGATGTTTGTCTTCAAAGGGAAGCAGTTATTGTATGCTCGGAAAGACAAAGCGACAAGTGATCATGCCCCATTAGATGATATCTTGAATGTTTGCTGCAACGTTCCAGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AhpC-TSA_2

Protein Analysis

200

Amino Acids

21.74

Weight (kDa)

8.31

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AhpC-TSA_2 PF13911 61 - 178 3.6e-20 AhpC/TSA antioxidant enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 1 cut(s) 415
AclI AACGTT 1 cut(s) 585
AclWI GGATC 1 cut(s) 302
AcsI RAATTY 1 cut(s) 200
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 2 cut(s) 91, 112
AgsI TTSAA 5 cut(s) 91, 177, 370, 499, 571
AluBI AGCT 3 cut(s) 212, 257, 422
AluI AGCT 3 cut(s) 212, 257, 422
Alw21I GWGCWC 2 cut(s) 259, 412
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 68, 579
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 3 cut(s) 27, 380, 412
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 94, 103
AvaII GGWCC 2 cut(s) 94, 103
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 259
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 2 cut(s) 259, 412
BbvI GCAGC 2 cut(s) 55, 566
BccI CCATC 1 cut(s) 345
BceAI ACGGC 1 cut(s) 65
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 423
BisI GCNGC 2 cut(s) 69, 580
BlsI GCNGC 2 cut(s) 70, 581
Bme18I GGWCC 2 cut(s) 94, 103
BmgT120I GGNCC 2 cut(s) 94, 103
BmiI GGNNCC 2 cut(s) 104, 244
BmsI GCATC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 487
BpmI CTGGAG 3 cut(s) 93, 234, 435
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 43, 288
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 112
Bse1I ACTGG 2 cut(s) 85, 590
Bse8I GATNNNNATC 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 43, 288
BseGI GGATG 3 cut(s) 155, 356, 492
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 2 cut(s) 91, 112
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 85, 590
BseXI GCAGC 2 cut(s) 55, 566
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 259, 412
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 91, 112
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 259, 412
Bsp143I GATC 3 cut(s) 307, 313, 544
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 1 cut(s) 415
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 104, 244
BspPI GGATC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 85, 590
BssECI CCNNGG 2 cut(s) 43, 288
BssMI GATC 3 cut(s) 307, 313, 544
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 258
Bst4CI ACNGT 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 288
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 3 cut(s) 155, 356, 492
BstKTI GATC 3 cut(s) 310, 316, 547
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 307, 313, 544
BstMWI GCNNNNNNNGC 3 cut(s) 77, 128, 383
BstPI GGTNACC 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 423
BstV1I GCAGC 2 cut(s) 55, 566
BstV2I GAAGAC 1 cut(s) 487
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 3 cut(s) 155, 356, 492
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 40, 63
Cfr13I GGNCC 2 cut(s) 94, 103
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 243
CviAII CATG 2 cut(s) 289, 548
CviJI RGCY 7 cut(s) 24, 122, 212, 257, 377, 422, 446
CviKI_1 RGCY 7 cut(s) 24, 122, 212, 257, 377, 422, 446
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 208
DpnI GATC 3 cut(s) 309, 315, 546
DpnII GATC 3 cut(s) 307, 313, 544
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 2 cut(s) 19, 565
Eco47I GGWCC 2 cut(s) 94, 103
Eco53kI GAGCTC 1 cut(s) 257
Eco91I GGTNACC 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 94
EcoO65I GGTNACC 1 cut(s) 276
EcoRV GATATC 2 cut(s) 19, 565
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 2 cut(s) 292, 551
FaiI YATR 8 cut(s) 290, 303, 327, 343, 348, 435, 519, 549
FaqI GGGAC 1 cut(s) 116
FatI CATG 2 cut(s) 288, 547
FbaI TGATCA 1 cut(s) 544
Fnu4HI GCNGC 2 cut(s) 69, 580
FokI GGATG 3 cut(s) 162, 363, 499
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 69, 580
GluI GCNGC 2 cut(s) 69, 580
GsuI CTGGAG 3 cut(s) 93, 234, 435
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 292, 551
HinfI GANTC 3 cut(s) 188, 206, 293
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 5 cut(s) 311, 399, 452, 568, 597
Hpy99I CGWCG 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 2 cut(s) 51, 585
HpyCH4V TGCA 5 cut(s) 131, 159, 269, 475, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 128, 383
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 2 cut(s) 51, 585
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 292, 551
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 307, 313, 544
Lsp1109I GCAGC 2 cut(s) 55, 566
LweI GCATC 1 cut(s) 140
MaeII ACGT 2 cut(s) 51, 585
MaeIII GTNAC 2 cut(s) 52, 276
MalI GATC 3 cut(s) 309, 315, 546
MboI GATC 3 cut(s) 307, 313, 544
MboII GAAGA 2 cut(s) 358, 487
MhlI GDGCHC 2 cut(s) 259, 412
MluCI AATT 2 cut(s) 200, 225
MlyI GAGTC 2 cut(s) 200, 287
MnlI CCTC 6 cut(s) 16, 53, 106, 107, 132, 476
MspA1I CMGCKG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 77, 128, 383
NcoI CCATGG 1 cut(s) 288
NdeII GATC 3 cut(s) 307, 313, 544
NlaIII CATG 2 cut(s) 292, 551
NlaIV GGNNCC 2 cut(s) 104, 244
NmeAIII GCCGAG 1 cut(s) 24
PfeI GAWTC 1 cut(s) 188
PflFI GACNNNGTC 1 cut(s) 80
PkrI GCNGC 2 cut(s) 70, 581
PleI GAGTC 2 cut(s) 200, 287
PpsI GAGTC 2 cut(s) 200, 287
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 259
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 94
PspEI GGTNACC 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 104, 244
PspPI GGNCC 2 cut(s) 94, 103
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
SacI GAGCTC 1 cut(s) 259
SatI GCNGC 2 cut(s) 69, 580
Sau3AI GATC 3 cut(s) 307, 313, 544
Sau96I GGNCC 2 cut(s) 94, 103
SchI GAGTC 2 cut(s) 200, 287
SduI GDGCHC 2 cut(s) 259, 412
SetI ASST 8 cut(s) 8, 54, 99, 214, 259, 283, 424, 588
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 2 cut(s) 94, 103
Sse9I AATT 2 cut(s) 200, 225
SsiI CCGC 1 cut(s) 415
SstI GAGCTC 1 cut(s) 259
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 2 cut(s) 54, 588
TaqI TCGA 1 cut(s) 358
TasI AATT 2 cut(s) 200, 225
TfiI GAWTC 1 cut(s) 188
TscAI CASTG 2 cut(s) 40, 70
TseI GCWGC 2 cut(s) 68, 579
TspRI CASTG 2 cut(s) 40, 70
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 2 cut(s) 94, 103
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.