Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

13551742 .. 13552296

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTACAGGGTCATCCTGAACCTGAGCAACAGACTAGCCTTACAGATTCTGGGCAAAGTTATTGGCCATGATTTGAGTGGAGGAGCAGACCTACAGTCTTCCTTGTTGTACAGACAATTCGTTTCACCTGACTTAGTATTATCTATTTCTGAGTCGACTGTAACTAATTTGGTTTCAAGTACATGGGATCTGGTTGTTGTGCTGGCGTCATCCGATGTATCACTACTTGTAAAGACTCGTGCAATGGCACTTCTTGTTGATTATATCCCATTTGCTGAACGACGTCTTTTACAGTCTCTTCTTGGGGCAGCAGATAGTGTTTATGGAGTGCTTGCTCATCCAAACTGTGAGGGATCCTTGTTGAGGCTTTCATTAGCACTGATAGCTGGCGCTTGCCTCTACTGTCCAGAAGAAGATATCTCTCGGGTTCCTGGTGGATTTGGCTCAGGCCAGAGGCATGGTTCTAGAGGGAGCAAATCCAGGCAGGTGGTGGAACGGAGGGAAAGGGATGGTAGACGAGAAGGAAAGTGGCAAAGATATGGACTAGTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.1

Weight (kDa)

9.15

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
AatII	GACGTC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	2 cut(s)	155, 514
AclWI	GGATC	3 cut(s)	195, 348, 361
AcoI	YGGCCR	1 cut(s)	64
AcyI	GRCGYC	2 cut(s)	206, 283
AfaI	GTAC	3 cut(s)	5, 110, 181
AfiI	CCNNNNNNNGG	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	177
AhdI	GACNNNNNGTC	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	2 cut(s)	430, 479
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	3 cut(s)	195, 348, 361
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	64, 448
ApeKI	GCWGC	1 cut(s)	308
ArsI	GACNNNNNNTTYG	1 cut(s)	534
AspLEI	GCGC	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	320
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	2 cut(s)	432, 481
BcoDI	GTCTC	1 cut(s)	300
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	3 cut(s)	35, 465, 545
BfmI	CTRYAG	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	432, 481
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	423
BmiI	GGNNCC	2 cut(s)	355, 429
BmrFI	CCNGG	2 cut(s)	432, 481
BpiI	GAAGAC	1 cut(s)	90
Bpu10I	CCTNAGC	2 cut(s)	23, 445
BsaHI	GRCGYC	2 cut(s)	206, 283
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	432, 481
BseGI	GGATG	4 cut(s)	12, 209, 337, 514
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	3 cut(s)	14, 141, 459
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	320
BshFI	GGCC	2 cut(s)	66, 450
BsiHKCI	CYCGRG	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	2 cut(s)	66, 450
BsoBI	CYCGRG	1 cut(s)	423
Bsp1407I	TGTACA	2 cut(s)	3, 108
Bsp143I	GATC	2 cut(s)	187, 353
BspANI	GGCC	2 cut(s)	66, 450
BspCNI	CTCAG	3 cut(s)	15, 142, 458
BspLI	GGNNCC	2 cut(s)	355, 429
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	3 cut(s)	195, 348, 361
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	2 cut(s)	3, 108
BssMI	GATC	2 cut(s)	187, 353
BssNI	GRCGYC	2 cut(s)	206, 283
BssSI	CACGAG	1 cut(s)	237
Bst2BI	CACGAG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	432, 481
Bst4CI	ACNGT	5 cut(s)	96, 160, 294, 347, 404
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	2 cut(s)	206, 283
BstAUI	TGTACA	2 cut(s)	3, 108
BstC8I	GCNNGC	4 cut(s)	204, 333, 388, 394
BstDEI	CTNAG	4 cut(s)	23, 133, 150, 445
BstENI	CCTNNNNNAGG	1 cut(s)	361
BstF5I	GGATG	4 cut(s)	12, 209, 337, 514
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	190, 356
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	187, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstNI	CCWGG	2 cut(s)	432, 481
BstSCI	CCNGG	2 cut(s)	430, 479
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	2 cut(s)	187, 353
BstXI	CCANNNNNNTGG	2 cut(s)	458, 487
BstYI	RGATCY	2 cut(s)	187, 353
BsuRI	GGCC	2 cut(s)	66, 450
BtsCI	GGATG	4 cut(s)	12, 209, 337, 514
BtsIMutI	CAGTG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	4 cut(s)	204, 333, 388, 394
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	392
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	4, 109, 180
CviAII	CATG	3 cut(s)	68, 183, 458
CviJI	RGCY	6 cut(s)	38, 66, 367, 386, 444, 450
CviKI_1	RGCY	6 cut(s)	38, 66, 367, 386, 444, 450
CviQI	GTAC	3 cut(s)	4, 109, 180
DdeI	CTNAG	4 cut(s)	23, 133, 150, 445
DpnI	GATC	2 cut(s)	189, 355
DpnII	GATC	2 cut(s)	187, 353
DriI	GACNNNNNGTC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	303
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	423
EcoNI	CCTNNNNNAGG	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	430, 479
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	3 cut(s)	71, 186, 461
FaiI	YATR	6 cut(s)	69, 184, 264, 324, 459, 540
FatI	CATG	3 cut(s)	67, 182, 457
FblI	GTMKAC	2 cut(s)	155, 514
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	3 cut(s)	196, 324, 521
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	35, 465, 545
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	1 cut(s)	309
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	66, 450
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	2 cut(s)	206, 283
Hin1II	CATG	3 cut(s)	71, 186, 461
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	3 cut(s)	46, 152, 235
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	2 cut(s)	156, 515
Hpy188I	TCNGA	2 cut(s)	151, 214
Hpy188III	TCNNGA	3 cut(s)	16, 407, 465
Hpy8I	GTNNAC	2 cut(s)	156, 515
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	5 cut(s)	96, 160, 294, 347, 404
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	4 cut(s)	23, 133, 150, 445
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	2 cut(s)	206, 283
Hsp92II	CATG	3 cut(s)	71, 186, 461
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	187, 353
LmnI	GCTCC	2 cut(s)	83, 471
Lsp1109I	GCAGC	1 cut(s)	320
MaeI	CTAG	3 cut(s)	35, 465, 545
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	189, 355
MboI	GATC	2 cut(s)	187, 353
MboII	GAAGA	4 cut(s)	90, 290, 422, 425
MflI	RGATCY	2 cut(s)	187, 353
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	2 cut(s)	116, 166
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	161, 229
MnlI	CCTC	7 cut(s)	74, 343, 357, 407, 447, 461, 492
Mox20I	TGGCCA	1 cut(s)	66
MscI	TGGCCA	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	432, 481
MvaI	CCWGG	2 cut(s)	432, 481
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	187, 353
NlaIII	CATG	3 cut(s)	71, 186, 461
NlaIV	GGNNCC	2 cut(s)	355, 429
PaqCI	CACCTGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	160, 229
PpsI	GAGTC	2 cut(s)	160, 229
Psp6I	CCWGG	2 cut(s)	430, 479
PspGI	CCWGG	2 cut(s)	430, 479
PspN4I	GGNNCC	2 cut(s)	355, 429
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	2 cut(s)	187, 353
RsaI	GTAC	3 cut(s)	5, 110, 181
RsaNI	GTAC	3 cut(s)	4, 109, 180
SalI	GTCGAC	1 cut(s)	154
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	187, 353
SchI	GAGTC	2 cut(s)	161, 229
ScrFI	CCNGG	2 cut(s)	432, 481
SetI	ASST	6 cut(s)	24, 93, 130, 286, 388, 489
SfcI	CTRYAG	1 cut(s)	92
SpeI	ACTAGT	1 cut(s)	544
Sse9I	AATT	2 cut(s)	116, 166
SspMI	CTAG	3 cut(s)	35, 465, 545
StyD4I	CCNGG	2 cut(s)	430, 479
TaaI	ACNGT	5 cut(s)	96, 160, 294, 347, 404
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	116, 166
TatI	WGTACW	3 cut(s)	3, 108, 179
TfiI	GAWTC	1 cut(s)	46
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	511
TspRI	CASTG	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	74, 487
XmiI	GTMKAC	2 cut(s)	155, 514
XspI	CTAG	3 cut(s)	35, 465, 545
ZraI	GACGTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.