Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

30554826 .. 30555357

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACATGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCTGTACAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGTGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.07

Weight (kDa)

5.26

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	74, 235
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	12
AlwI	GGATC	2 cut(s)	74, 235
AseI	ATTAAT	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	239
AvrII	CCTAGG	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	14
BfaI	CTAG	3 cut(s)	65, 206, 240
BfmI	CTRYAG	1 cut(s)	87
BglII	AGATCT	1 cut(s)	121
BlnI	CCTAGG	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	13, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	13, 239
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	79, 121, 180, 227
BspACI	CCGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	74, 235
BsrGI	TGTACA	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	13, 239
BssMI	GATC	4 cut(s)	79, 121, 180, 227
BssT1I	CCWWGG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	4 cut(s)	82, 124, 183, 230
BstMBI	GATC	4 cut(s)	79, 121, 180, 227
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	2 cut(s)	70, 113
CviKI_1	RGCY	2 cut(s)	70, 113
CviQI	GTAC	1 cut(s)	186
DpnI	GATC	4 cut(s)	81, 123, 182, 229
DpnII	GATC	4 cut(s)	79, 121, 180, 227
Eco130I	CCWWGG	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	12
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	24, 41, 136
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	3 cut(s)	65, 206, 240
Hin1II	CATG	1 cut(s)	43
HinfI	GANTC	2 cut(s)	96, 209
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	79, 121, 180, 227
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	26, 134, 153
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	3 cut(s)	65, 206, 240
MalI	GATC	4 cut(s)	81, 123, 182, 229
MboI	GATC	4 cut(s)	79, 121, 180, 227
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	157
MnlI	CCTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	33, 174
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
NdeII	GATC	4 cut(s)	79, 121, 180, 227
NlaIII	CATG	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	96, 209
PshBI	ATTAAT	1 cut(s)	174
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	33, 174
Sau3AI	GATC	4 cut(s)	79, 121, 180, 227
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	2 cut(s)	224, 245
SfaNI	GCATC	1 cut(s)	51
SfcI	CTRYAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	65, 206, 240
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	1 cut(s)	157
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	96, 209
Tru1I	TTAA	2 cut(s)	33, 174
Tru9I	TTAA	2 cut(s)	33, 174
TspGWI	ACGGA	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	174
XmaJI	CCTAGG	1 cut(s)	239
XspI	CTAG	3 cut(s)	65, 206, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.