Rw4G011750

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002855
Physical Location & Seq
Forward (+)
27862556 .. 27865311
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011750.1

Sequence Viewer

Length: 447 bp
ATGGCAATAAACTGGAGCAAGATAGCAATAGGTTATATGATAGTTGCAGCTGACAAGAAACCTTATTGCTTCATATATTCTGCATCTTATCTGCACAGGCAAAGGCTCTTTGTGGTGGTTGGTGGAGGAGCTGGTGCTCGACATTACCTACCTTGTGCTCATGCTGCAATAAAATCCGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACAGGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCTCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACAGCAGTTCTTGCTTCACTAGAATCTGAATGGAGGTGTGGATCAGTTGCTCCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

9.16

Isoelectric Point (pI)

24.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 376, 436
AfaI GTAC 1 cut(s) 388
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 2 cut(s) 50, 131
AluI AGCT 2 cut(s) 50, 131
Alw21I GWGCWC 2 cut(s) 139, 160
AlwI GGATC 2 cut(s) 376, 436
ApeKI GCWGC 2 cut(s) 47, 164
AseI ATTAAT 1 cut(s) 375
AspA2I CCTAGG 1 cut(s) 440
AvrII CCTAGG 1 cut(s) 440
Bbv12I GWGCWC 2 cut(s) 139, 160
BbvI GCAGC 2 cut(s) 59, 151
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 237
BfaI CTAG 3 cut(s) 266, 407, 441
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 237
BglII AGATCT 1 cut(s) 322
BisI GCNGC 2 cut(s) 48, 165
BlnI CCTAGG 1 cut(s) 440
BlsI GCNGC 2 cut(s) 49, 166
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 92, 252
BpmI CTGGAG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 214, 440
Bse1I ACTGG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 214, 440
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 59, 151
BsgI GTGCAG 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 139, 160
Bsp1286I GDGCHC 2 cut(s) 139, 160
Bsp143I GATC 4 cut(s) 280, 322, 381, 428
BspPI GGATC 2 cut(s) 376, 436
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 214, 440
BssMI GATC 4 cut(s) 280, 322, 381, 428
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 398
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 4 cut(s) 283, 325, 384, 431
BstMBI GATC 4 cut(s) 280, 322, 381, 428
BstMWI GCNNNNNNNGC 2 cut(s) 164, 398
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 59, 151
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuI GTATCC 1 cut(s) 237
BtsCI GGATG 1 cut(s) 211
Csp6I GTAC 1 cut(s) 387
CviAII CATG 1 cut(s) 161
CviJI RGCY 6 cut(s) 50, 106, 131, 188, 271, 314
CviKI_1 RGCY 6 cut(s) 50, 106, 131, 188, 271, 314
CviQI GTAC 1 cut(s) 387
DpnI GATC 4 cut(s) 282, 324, 383, 430
DpnII GATC 4 cut(s) 280, 322, 381, 428
Eco130I CCWWGG 1 cut(s) 440
Eco32I GATATC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 1 cut(s) 164
FaiI YATR 9 cut(s) 36, 38, 74, 76, 162, 201, 203, 225, 337
FatI CATG 1 cut(s) 160
FauNDI CATATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 48, 165
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 2 cut(s) 48, 165
FspBI CTAG 3 cut(s) 266, 407, 441
GluI GCNGC 2 cut(s) 48, 165
GsuI CTGGAG 1 cut(s) 34
Hin1II CATG 1 cut(s) 164
HinfI GANTC 2 cut(s) 297, 410
Hpy188I TCNGA 1 cut(s) 415
Hpy188III TCNNGA 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 47, 83, 94, 167, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 398
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 4 cut(s) 280, 322, 381, 428
LmnI GCTCC 3 cut(s) 15, 128, 442
LpnPI CCDG 9 cut(s) 82, 117, 170, 180, 200, 226, 227, 335, 354
Lsp1109I GCAGC 2 cut(s) 59, 151
LweI GCATC 2 cut(s) 92, 252
MaeI CTAG 3 cut(s) 266, 407, 441
MalI GATC 4 cut(s) 282, 324, 383, 430
MboI GATC 4 cut(s) 280, 322, 381, 428
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 139, 160
MluCI AATT 1 cut(s) 358
MnlI CCTC 2 cut(s) 119, 414
MseI TTAA 2 cut(s) 234, 375
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 164, 398
NdeI CATATG 1 cut(s) 201
NdeII GATC 4 cut(s) 280, 322, 381, 428
NlaIII CATG 1 cut(s) 164
PfeI GAWTC 2 cut(s) 297, 410
PkrI GCNGC 2 cut(s) 49, 166
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 234, 375
SatI GCNGC 2 cut(s) 48, 165
Sau3AI GATC 4 cut(s) 280, 322, 381, 428
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 2 cut(s) 139, 160
SetI ASST 8 cut(s) 34, 52, 64, 133, 150, 154, 425, 446
SfaNI GCATC 2 cut(s) 92, 252
SfcI CTRYAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 266, 407, 441
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 139
TasI AATT 1 cut(s) 358
TfiI GAWTC 2 cut(s) 297, 410
Tru1I TTAA 2 cut(s) 234, 375
Tru9I TTAA 2 cut(s) 234, 375
TseI GCWGC 2 cut(s) 47, 164
TspDTI ATGAA 1 cut(s) 61
TspGWI ACGGA 3 cut(s) 166, 370, 374
VspI ATTAAT 1 cut(s) 375
XmaJI CCTAGG 1 cut(s) 440
XspI CTAG 3 cut(s) 266, 407, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.