Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

34368899 .. 34373918

Gene Structure 5020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG172400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTGATGTTCAGATTGGTGAGAAGCAAATATTGAGAAGGTGTGAGCTTCAAGGCAAAGGCTCTTTATGGTGGTTGGTGGAGGAGCTATGGCTTATAGACAAGGGTGCTCGACATTACCTACCTTGTGCTCGTGCTGCAATAAAATACGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACAGGATACTGTTTGTTTTAGAGATGCTAGAGCCATTCCTTGATCCCGTTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCTAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACAGCAGTGCAGAAACTAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGCGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.44

Weight (kDa)

8.94

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	248, 349, 424
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	2 cut(s)	53, 274
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	49, 88
AluI	AGCT	2 cut(s)	49, 88
Alw21I	GWGCWC	2 cut(s)	112, 133
AlwI	GGATC	3 cut(s)	248, 349, 424
ApeKI	GCWGC	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	348
AspA2I	CCTAGG	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	428
BauI	CACGAG	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	112, 133
BbvI	GCAGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	188
BciVI	GTATCC	1 cut(s)	210
BfaI	CTAG	5 cut(s)	239, 314, 377, 395, 429
BfuI	GTATCC	1 cut(s)	210
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	1 cut(s)	138
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	187, 428
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	187, 428
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	124
BsgI	GTGCAG	1 cut(s)	389
BsiHKAI	GWGCWC	2 cut(s)	112, 133
BslI	CCNNNNNNNGG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	112, 133
Bsp143I	GATC	4 cut(s)	253, 295, 354, 416
BspPI	GGATC	3 cut(s)	248, 349, 424
BssECI	CCNNGG	2 cut(s)	187, 428
BssMI	GATC	4 cut(s)	253, 295, 354, 416
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	428
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	4 cut(s)	256, 298, 357, 419
BstMBI	GATC	4 cut(s)	253, 295, 354, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuI	GTATCC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	360
CviJI	RGCY	7 cut(s)	49, 63, 88, 94, 161, 244, 287
CviKI_1	RGCY	7 cut(s)	49, 63, 88, 94, 161, 244, 287
CviQI	GTAC	1 cut(s)	360
DpnI	GATC	4 cut(s)	255, 297, 356, 418
DpnII	GATC	4 cut(s)	253, 295, 354, 416
Eco130I	CCWWGG	1 cut(s)	428
Eco32I	GATATC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
FaiI	YATR	7 cut(s)	70, 91, 98, 174, 176, 198, 310
FauNDI	CATATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	5 cut(s)	239, 314, 377, 395, 429
GluI	GCNGC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	270, 398
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	15, 403
Hpy188III	TCNNGA	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	33, 399
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	140, 308, 370
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	253, 295, 354, 416
LmnI	GCTCC	2 cut(s)	85, 430
LpnPI	CCDG	6 cut(s)	143, 153, 173, 199, 200, 308
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	5 cut(s)	239, 314, 377, 395, 429
MaeII	ACGT	1 cut(s)	150
MalI	GATC	4 cut(s)	255, 297, 356, 418
MboI	GATC	4 cut(s)	253, 295, 354, 416
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	112, 133
MluCI	AATT	1 cut(s)	331
MnlI	CCTC	2 cut(s)	76, 402
MseI	TTAA	2 cut(s)	207, 348
MslI	CAYNNNNRTG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	4 cut(s)	253, 295, 354, 416
PfeI	GAWTC	2 cut(s)	270, 398
PkrI	GCNGC	1 cut(s)	139
PshBI	ATTAAT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	207, 348
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	4 cut(s)	253, 295, 354, 416
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	112, 133
SetI	ASST	7 cut(s)	44, 51, 90, 123, 127, 153, 434
SfaNI	GCATC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	1 cut(s)	331
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	5 cut(s)	239, 314, 377, 395, 429
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	1 cut(s)	112
TasI	AATT	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	270, 398
Tru1I	TTAA	2 cut(s)	207, 348
Tru9I	TTAA	2 cut(s)	207, 348
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	1 cut(s)	137
TspGWI	ACGGA	2 cut(s)	343, 347
TspRI	CASTG	1 cut(s)	372
VspI	ATTAAT	1 cut(s)	348
XbaI	TCTAGA	1 cut(s)	313
XmaJI	CCTAGG	1 cut(s)	428
XspI	CTAG	5 cut(s)	239, 314, 377, 395, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.