Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

36464785 .. 36466889

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0328500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAAATCTGTGGAAGGAACAAGAGTTTTGGAGGCTTTGGAAGTGATTGAAAAAAAGGTTTTGCGTACAAAGAAGGGTTCCAACAAAGTGGTGAAGAAGGTACATCCCACCTGCCCCAAAGTAGTTGAGAAAGTAGTTGTCGATGCGGCATTGCGTCCGAATCTGGATGAGACTGTGGAAGAAAATGCTGTACCAATTGATATAAAGGATCCAGAGCAAGAAGAGGGGGCAGAATATGTGGATTTGACATTGCATGAACCCCTAAAGACAAAAAAAGCTGAGATTGACTGCAAGTTGGCAATAGGTTCCATTGACCACATTGTTGCTTATGCCACTGTCATGGAGGGTGATTATCCTTCTAGTACAGTTCATGGTGCACCACTGGGCAATGGTAATATGCGTGTTTCGGTATATGCTGCAGTTGAGGAGAATGTAAAGATCCCATTTCCTGTGAAAGATGAAATTGAAACTGTTAAGCAGGCTATGGGGAGTTGGGTAGCATGGCCTACACACCTAATCATAATGTCACATGTGAAGAAACCTGTCAAGGAAAATGTTGAGAGGAAGAGGAAAAGGAGAGATATAGAGGAAGAAGACTCAGAGTTTCAGTTTAGCTTGGCGTTAATGGCACCTACATTACCAGATTCATTGAAGATGCTATGTATGTGGGGTGAGGATAAATTCAAAGGAGGGCGTACCATCTCCTTTTACATGGAACCTGAAGTCTTTGGATATTCTCGCAAGAGCTTCATAATAGGATCAGATGTTCGACGACTTGCAAGCATGAGGGAAGTCACTGGAAATTGCATTTCTCTATACCAGAGATACCTCTATGAGAAATTGACTACATATAAAATGGTGGACATGGTTGCATTTGTTGATCCTTCACATATAGGTGCAGTAGGGTGTGGGAATGGAACTACCAGAGCCCAACATATCAAAGATAGACTTGTAACTGCTAAACCAGGGCAGATGTTCATGTTGCCGTTTAATTCAGGTGATCACTGGATCTTGACAATTATTCATCCGGACGAAGGTACTGCCTATTTTATGGATCCACTGAAAAGACGCTTACCCACTAGAGATTGGATGTCTATTGTGGAAACTGCAATAGGTATGTATAATGTTGCAATGAACAGGAAAGGCGCTCGGAGTTCTACAAAATGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGCGGGTACTTTGTGATGAGATACATGAGGGATATCATTGAGGATAAGGACTTATCATTGTTTGCTACCAAGTGGGAGAGGAGAGGCAATAGCCAATATACGCAAGCAGATATTGATGAGATACGAAATGAGTGGGCGAAGTTTGTCGTGAATATGTGTAGGCAGGCCATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

461

Amino Acids

52.44

Weight (kDa)

8.45

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	94 - 175	1.1e-13	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	305 - 458	3.7e-12	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	628
AccIII	TCCGGA	1 cut(s)	1027
AciI	CCGC	2 cut(s)	146, 1212
AclWI	GGATC	8 cut(s)	203, 216, 433, 766, 875, 1016, 1049, 1062
AcsI	RAATTY	2 cut(s)	680, 1171
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	7 cut(s)	67, 102, 192, 364, 697, 1039, 1217
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	50, 467, 652, 685
AjnI	CCWGG	1 cut(s)	964
AloI	GAACNNNNNNTCC	2 cut(s)	750, 782
AluBI	AGCT	3 cut(s)	278, 615, 747
AluI	AGCT	3 cut(s)	278, 615, 747
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	8 cut(s)	203, 216, 433, 766, 875, 1016, 1049, 1062
Aor13HI	TCCGGA	1 cut(s)	1027
AoxI	GGCC	2 cut(s)	503, 1374
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	2 cut(s)	680, 1171
AspLEI	GCGC	1 cut(s)	1148
AsuHPI	GGTGA	4 cut(s)	103, 359, 683, 1010
BaeGI	GKGCMC	1 cut(s)	379
BamHI	GGATCC	2 cut(s)	208, 1054
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	931
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	970
BcgI	CGANNNNNNTGC	2 cut(s)	1022, 1056
BciT130I	CCWGG	1 cut(s)	966
BclI	TGATCA	1 cut(s)	1000
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	3 cut(s)	360, 1080, 1197
BfmI	CTRYAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	1149
BfuAI	ACCTGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	147, 417
BlsI	GCNGC	2 cut(s)	148, 418
Bme1390I	CCNGG	1 cut(s)	966
BmiI	GGNNCC	6 cut(s)	79, 210, 307, 630, 717, 1056
BmrFI	CCNGG	1 cut(s)	966
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	133, 645
BmuI	ACTGGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	965
BsaWI	WCCGGW	1 cut(s)	1027
BsaXI	ACNNNNNCTCC	2 cut(s)	1199, 1229
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse1I	ACTGG	3 cut(s)	387, 802, 1010
Bse3DI	GCAATG	4 cut(s)	149, 248, 394, 1137
BseAI	TCCGGA	1 cut(s)	1027
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	1 cut(s)	965
BseGI	GGATG	4 cut(s)	103, 172, 1024, 1095
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseMI	GCAATG	4 cut(s)	149, 248, 394, 1137
BseMII	CTCAG	2 cut(s)	270, 612
BseNI	ACTGG	3 cut(s)	387, 802, 1010
BseRI	GAGGAG	2 cut(s)	440, 1303
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	2 cut(s)	505, 1376
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	1028
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	1182
BsnI	GGCC	2 cut(s)	505, 1376
Bsp1286I	GDGCHC	2 cut(s)	379, 931
Bsp13I	TCCGGA	1 cut(s)	1027
Bsp143I	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
BspACI	CCGC	2 cut(s)	146, 1212
BspANI	GGCC	2 cut(s)	505, 1376
BspCNI	CTCAG	2 cut(s)	271, 611
BspEI	TCCGGA	1 cut(s)	1027
BspLI	GGNNCC	6 cut(s)	79, 210, 307, 630, 717, 1056
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	8 cut(s)	203, 216, 433, 766, 875, 1016, 1049, 1062
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	4 cut(s)	149, 248, 394, 1137
BsrI	ACTGG	3 cut(s)	387, 802, 1010
BssECI	CCNNGG	1 cut(s)	965
BssMI	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	4 cut(s)	175, 337, 367, 472
Bst6I	CTCTTC	2 cut(s)	216, 560
BstC8I	GCNNGC	5 cut(s)	480, 781, 1180, 1314, 1374
BstDEI	CTNAG	2 cut(s)	279, 598
BstF5I	GGATG	4 cut(s)	103, 172, 1024, 1095
BstH2I	RGCGCY	1 cut(s)	1149
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	7 cut(s)	211, 441, 761, 883, 1003, 1011, 1057
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	626
BstNI	CCWGG	1 cut(s)	966
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	964
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	403
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	4 cut(s)	208, 438, 1008, 1054
BstXI	CCANNNNNNTGG	2 cut(s)	88, 340
BstYI	RGATCY	4 cut(s)	208, 438, 1008, 1054
BsuRI	GGCC	2 cut(s)	505, 1376
BtsCI	GGATG	4 cut(s)	103, 172, 1024, 1095
BtsIMutI	CAGTG	5 cut(s)	333, 380, 795, 1003, 1058
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	5 cut(s)	480, 781, 1180, 1314, 1374
CfoI	GCGC	1 cut(s)	1148
CseI	GACGC	2 cut(s)	143, 1077
Csp6I	GTAC	7 cut(s)	66, 101, 191, 363, 696, 1038, 1216
CviQI	GTAC	7 cut(s)	66, 101, 191, 363, 696, 1038, 1216
DdeI	CTNAG	2 cut(s)	279, 598
DpnI	GATC	7 cut(s)	210, 440, 760, 882, 1002, 1010, 1056
DpnII	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
Eam1104I	CTCTTC	2 cut(s)	216, 560
EarI	CTCTTC	2 cut(s)	216, 560
Eco24I	GRGCYC	1 cut(s)	931
Eco32I	GATATC	1 cut(s)	1243
Eco57I	CTGAAG	1 cut(s)	741
EcoRII	CCWGG	1 cut(s)	964
EcoRV	GATATC	1 cut(s)	1243
EcoT38I	GRGCYC	1 cut(s)	931
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FauI	CCCGC	1 cut(s)	1205
FbaI	TGATCA	1 cut(s)	1000
Fnu4HI	GCNGC	2 cut(s)	147, 417
FokI	GGATG	4 cut(s)	90, 179, 1011, 1102
FriOI	GRGCYC	1 cut(s)	931
Fsp4HI	GCNGC	2 cut(s)	147, 417
FspBI	CTAG	3 cut(s)	360, 1080, 1197
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	2 cut(s)	147, 417
HaeII	RGCGCY	1 cut(s)	1149
HaeIII	GGCC	2 cut(s)	505, 1376
HapII	CCGG	1 cut(s)	1028
HgaI	GACGC	2 cut(s)	143, 1077
HhaI	GCGC	1 cut(s)	1148
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HinfI	GANTC	3 cut(s)	160, 596, 644
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	4 cut(s)	103, 359, 683, 1010
Hpy166II	GTNNAC	2 cut(s)	377, 862
Hpy188I	TCNGA	4 cut(s)	159, 601, 763, 1152
Hpy188III	TCNNGA	5 cut(s)	164, 212, 1012, 1028, 1357
Hpy8I	GTNNAC	2 cut(s)	377, 862
Hpy99I	CGWCG	1 cut(s)	774
HpyAV	CCTTC	6 cut(s)	8, 67, 91, 366, 894, 1028
HpyCH4III	ACNGT	4 cut(s)	175, 337, 367, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	626
HpyF3I	CTNAG	2 cut(s)	279, 598
HspAI	GCGC	1 cut(s)	1146
Kpn2I	TCCGGA	1 cut(s)	1027
Ksp22I	TGATCA	1 cut(s)	1000
Kzo9I	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	2 cut(s)	133, 645
MaeI	CTAG	3 cut(s)	360, 1080, 1197
MaeIII	GTNAC	3 cut(s)	525, 793, 952
MalI	GATC	7 cut(s)	210, 440, 760, 882, 1002, 1010, 1056
MboI	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
MboII	GAAGA	8 cut(s)	106, 191, 233, 547, 577, 602, 605, 664
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	4 cut(s)	208, 438, 1008, 1054
MhlI	GDGCHC	2 cut(s)	379, 931
MluCI	AATT	8 cut(s)	195, 462, 680, 802, 839, 991, 1017, 1171
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	1027
MseI	TTAA	3 cut(s)	474, 623, 990
MslI	CAYNNNNRTG	2 cut(s)	338, 894
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	1 cut(s)	966
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	1 cut(s)	1182
MvaI	CCWGG	1 cut(s)	966
MwoI	GCNNNNNNNGC	1 cut(s)	626
NdeII	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
NlaIV	GGNNCC	6 cut(s)	79, 210, 307, 630, 717, 1056
NmuCI	GTSAC	2 cut(s)	525, 793
NspI	RCATGY	1 cut(s)	533
PaqCI	CACCTGC	1 cut(s)	119
PciI	ACATGT	1 cut(s)	529
PctI	GAATGC	1 cut(s)	1182
PfeI	GAWTC	2 cut(s)	160, 644
PkrI	GCNGC	2 cut(s)	148, 418
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
PscI	ACATGT	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	964
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	6 cut(s)	79, 210, 307, 630, 717, 1056
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	4 cut(s)	208, 438, 1008, 1054
RsaI	GTAC	7 cut(s)	67, 102, 192, 364, 697, 1039, 1217
RsaNI	GTAC	7 cut(s)	66, 101, 191, 363, 696, 1038, 1216
RseI	CAYNNNNRTG	2 cut(s)	338, 894
SaqAI	TTAA	3 cut(s)	474, 623, 990
SatI	GCNGC	2 cut(s)	147, 417
Sau3AI	GATC	7 cut(s)	208, 438, 758, 880, 1000, 1008, 1054
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	966
SduI	GDGCHC	2 cut(s)	379, 931
SfaNI	GCATC	2 cut(s)	133, 645
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	338, 894
Sse9I	AATT	8 cut(s)	195, 462, 680, 802, 839, 991, 1017, 1171
SsiI	CCGC	2 cut(s)	146, 1212
SspMI	CTAG	3 cut(s)	360, 1080, 1197
StyD4I	CCNGG	1 cut(s)	964
TaaI	ACNGT	4 cut(s)	175, 337, 367, 472
TaqI	TCGA	2 cut(s)	141, 769
TasI	AATT	8 cut(s)	195, 462, 680, 802, 839, 991, 1017, 1171
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	160, 644
Tru1I	TTAA	3 cut(s)	474, 623, 990
Tru9I	TTAA	3 cut(s)	474, 623, 990
TscAI	CASTG	5 cut(s)	340, 387, 802, 1010, 1065
TseFI	GTSAC	2 cut(s)	525, 793
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	525, 793
TspDTI	ATGAA	9 cut(s)	17, 270, 359, 474, 636, 739, 967, 1013, 1148
TspRI	CASTG	5 cut(s)	340, 387, 802, 1010, 1065
VneI	GTGCAC	1 cut(s)	375
XapI	RAATTY	2 cut(s)	680, 1171
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	3 cut(s)	360, 1080, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.