Rh3DG269000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002855
Physical Location & Seq
Reverse (-)
26905467 .. 26917616
12150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG269000.1

Sequence Viewer

Length: 390 bp
ATGAAGAATTTTGGGGTGTCTCAGACTGGTCTGAATCTCCATCTTTCTCCTCGGCTGGTGGGTGCTCGACATTACCTAGCTTGTGCTCGTGCTGCAACAAAATACGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCTAGGAAAGTATAAGGAAGTTAAGCACAAGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCAGCTGTAGGTAGATTCAAGGGTAAAATAGCCTTTGGAGACCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACAGTAGTGCAGAAACTAGCAGTTCTTCCTTCACTGGAATCTGAATGGAGGCGTGGATCAGTTGCTCCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.35

Weight (kDa)

9.58

Isoelectric Point (pI)

40.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 203, 304, 379
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 2 cut(s) 80, 215
AluI AGCT 2 cut(s) 80, 215
Alw21I GWGCWC 2 cut(s) 67, 88
Alw26I GTCTC 2 cut(s) 24, 243
AlwI GGATC 3 cut(s) 203, 304, 379
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 303
AspA2I CCTAGG 2 cut(s) 142, 383
AvrII CCTAGG 2 cut(s) 142, 383
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 67, 88
BbvI GCAGC 1 cut(s) 79
BccI CCATC 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 24, 243
BfaI CTAG 5 cut(s) 77, 143, 194, 332, 384
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 93
BlnI CCTAGG 2 cut(s) 142, 383
BlsI GCNGC 1 cut(s) 94
BmsI GCATC 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 3 cut(s) 50, 142, 383
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 31, 354
BseDI CCNNGG 3 cut(s) 50, 142, 383
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 2 cut(s) 31, 354
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 79
BsgI GTGCAG 1 cut(s) 344
BsiHKAI GWGCWC 2 cut(s) 67, 88
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 2 cut(s) 24, 243
Bso31I GGTCTC 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 67, 88
Bsp143I GATC 3 cut(s) 208, 309, 371
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 3 cut(s) 203, 304, 379
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 2 cut(s) 31, 354
BssECI CCNNGG 3 cut(s) 50, 142, 383
BssMI GATC 3 cut(s) 208, 309, 371
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 142, 383
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 177, 319
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 211, 312, 374
BstMAI GTCTC 2 cut(s) 24, 243
BstMBI GATC 3 cut(s) 208, 309, 371
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 347
Csp6I GTAC 1 cut(s) 315
CviJI RGCY 6 cut(s) 55, 80, 116, 199, 215, 242
CviKI_1 RGCY 6 cut(s) 55, 80, 116, 199, 215, 242
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 21
DpnI GATC 3 cut(s) 210, 311, 373
DpnII GATC 3 cut(s) 208, 309, 371
Eco130I CCWWGG 2 cut(s) 142, 383
Eco31I GGTCTC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 139
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 2 cut(s) 142, 383
ErhI CCWWGG 2 cut(s) 142, 383
FaiI YATR 4 cut(s) 129, 131, 153, 265
FauNDI CATATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 5 cut(s) 77, 143, 194, 332, 384
GluI GCNGC 1 cut(s) 93
HinfI GANTC 3 cut(s) 34, 225, 353
Hpy188I TCNGA 3 cut(s) 24, 33, 358
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 177, 319
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 3 cut(s) 95, 263, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 105
Kzo9I GATC 3 cut(s) 208, 309, 371
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 8 cut(s) 12, 41, 98, 108, 225, 263, 282, 335
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 1 cut(s) 180
MaeI CTAG 5 cut(s) 77, 143, 194, 332, 384
MaeII ACGT 1 cut(s) 105
MalI GATC 3 cut(s) 210, 311, 373
MboI GATC 3 cut(s) 208, 309, 371
MboII GAAGA 2 cut(s) 16, 332
MhlI GDGCHC 2 cut(s) 67, 88
MluCI AATT 2 cut(s) 7, 286
MnlI CCTC 2 cut(s) 60, 357
MseI TTAA 2 cut(s) 162, 303
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeI CATATG 1 cut(s) 129
NdeII GATC 3 cut(s) 208, 309, 371
NmeAIII GCCGAG 1 cut(s) 31
PfeI GAWTC 3 cut(s) 34, 225, 353
PkrI GCNGC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 2 cut(s) 162, 303
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 3 cut(s) 208, 309, 371
SduI GDGCHC 2 cut(s) 67, 88
SetI ASST 7 cut(s) 78, 82, 108, 217, 223, 255, 389
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 7, 286
SspMI CTAG 5 cut(s) 77, 143, 194, 332, 384
StyI CCWWGG 2 cut(s) 142, 383
TaaI ACNGT 2 cut(s) 177, 319
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 67
TasI AATT 2 cut(s) 7, 286
TfiI GAWTC 3 cut(s) 34, 225, 353
Tru1I TTAA 2 cut(s) 162, 303
Tru9I TTAA 2 cut(s) 162, 303
TscAI CASTG 1 cut(s) 354
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 298, 302
TspRI CASTG 1 cut(s) 354
VspI ATTAAT 1 cut(s) 303
XapI RAATTY 1 cut(s) 7
XmaJI CCTAGG 2 cut(s) 142, 383
XspI CTAG 5 cut(s) 77, 143, 194, 332, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.