Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7996888.1

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 416

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7996888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

cttttcactcccacaaagagcgacagagatatggaggtagagttcgaagcgagagtgaagcctctcgagtacaaagtgaaggcaatgtcacgtgagtccccgtcgcagaaggccggtcacgtgctcgacgccgacctccgctctcactggtccaccgccaccaacaccaaggagtggatcctcctcgaactcaacgtaacttccctaatccctaatccttcaaccctaaaaaaaggcccaattttcttattcaatttctgtgctttcgggttttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

7.99

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	2 cut(s)	139, 156
AclWI	GGATC	2 cut(s)	172, 185
AcvI	CACGTG	2 cut(s)	92, 121
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	2 cut(s)	222, 253
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw21I	GWGCWC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	172, 185
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	111, 235
AspS9I	GGNCC	2 cut(s)	150, 236
AsuII	TTCGAA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	177
BbrPI	CACGTG	2 cut(s)	92, 121
Bbv12I	GWGCWC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	150, 236
BmiI	GGNNCC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	45
BsaAI	YACGTR	2 cut(s)	92, 121
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	113, 237
BsiHKAI	GWGCWC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	113, 237
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	139, 156
BspANI	GGCC	2 cut(s)	113, 237
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	172, 185
BspT104I	TTCGAA	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	90
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	168
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	2 cut(s)	92, 121
BstBI	TTCGAA	1 cut(s)	45
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	113, 237
BtsIMutI	CAGTG	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	150, 236
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	70
CviJI	RGCY	3 cut(s)	61, 113, 237
CviKI_1	RGCY	3 cut(s)	61, 113, 237
CviQI	GTAC	1 cut(s)	70
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	150
Eco72I	CACGTG	2 cut(s)	92, 121
Eco88I	CYCGRG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
FaiI	YATR	1 cut(s)	32
FaqI	GGGAC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	113, 237
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	114
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	2 cut(s)	106, 131
HpyAV	CCTTC	3 cut(s)	73, 103, 228
HpyCH4IV	ACGT	3 cut(s)	91, 120, 195
HpySE526I	ACGT	3 cut(s)	91, 120, 195
Hsp92I	GRCGYC	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	177
LpnPI	CCDG	2 cut(s)	127, 133
MaeI	CTAG	1 cut(s)	277
MaeII	ACGT	3 cut(s)	91, 120, 195
MaeIII	GTNAC	3 cut(s)	87, 116, 196
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	177
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	2 cut(s)	240, 253
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	28, 72, 146, 191, 194
MspI	CCGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	87, 116
NspV	TTCGAA	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	103
PmaCI	CACGTG	2 cut(s)	92, 121
PmlI	CACGTG	2 cut(s)	92, 121
PpsI	GAGTC	1 cut(s)	103
Ppu21I	YACGTR	2 cut(s)	92, 121
PspCI	CACGTG	2 cut(s)	92, 121
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	2 cut(s)	150, 236
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	150, 236
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	5 cut(s)	39, 94, 123, 138, 198
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	45
SinI	GGWCC	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	240, 253
SsiI	CCGC	2 cut(s)	139, 156
SspMI	CTAG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	3 cut(s)	94, 123, 198
TaqI	TCGA	4 cut(s)	45, 66, 126, 186
TasI	AATT	2 cut(s)	240, 253
TatI	WGTACW	1 cut(s)	69
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	2 cut(s)	87, 116
Tsp45I	GTSAC	2 cut(s)	87, 116
TspRI	CASTG	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	65
XspI	CTAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.