Rh1AG423200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002855
Physical Location & Seq
Reverse (-)
65271670 .. 65271921
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG423200.1

Sequence Viewer

Length: 252 bp
ATGGAGGCTCCGGACTCGGAGGTTGAGATCTGGATTATCGGAGCTTTCTTCGATTCCGAGCCAGTCGATCTGAACGCCTCTCGGTTCAACCAGATTCTGAACGGTGACGCTGTAAACGAATCAGAGAAGGAGGAGGAGTTAGTCTTCTACACCACAGCTGCACTTGGCTCTCGATTCGCTCCAGCGGCGCCTCGATTTCGCAGTGGAGGAGTTATTCCGGATTTCTCCTATATCGATTTGCCTGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

4.05

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccIII TCCGGA 2 cut(s) 10, 217
AciI CCGC 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 44, 158
AluI AGCT 2 cut(s) 44, 158
AlwNI CAGNNNCTG 1 cut(s) 97
Aor13HI TCCGGA 2 cut(s) 10, 217
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 145
BfoI RGCGCY 1 cut(s) 191
BglII AGATCT 1 cut(s) 27
BisI GCNGC 2 cut(s) 159, 186
BlsI GCNGC 2 cut(s) 160, 187
BmiI GGNNCC 2 cut(s) 9, 189
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 10, 217
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 1 cut(s) 62
BseAI TCCGGA 2 cut(s) 10, 217
BseCI ATCGAT 1 cut(s) 234
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 3 cut(s) 146, 149, 222
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 234
BsiSI CCGG 2 cut(s) 11, 218
Bsp13I TCCGGA 2 cut(s) 10, 217
Bsp143I GATC 2 cut(s) 27, 67
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 234
BspEI TCCGGA 2 cut(s) 10, 217
BspLI GGNNCC 2 cut(s) 9, 189
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 62
BssMI GATC 2 cut(s) 27, 67
BssNI GRCGYC 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 30, 70
BstMBI GATC 2 cut(s) 27, 67
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 1 cut(s) 116
CviJI RGCY 5 cut(s) 8, 44, 61, 158, 168
CviKI_1 RGCY 5 cut(s) 8, 44, 61, 158, 168
DdeI CTNAG 1 cut(s) 243
DinI GGCGCC 1 cut(s) 189
DpnI GATC 2 cut(s) 29, 69
DpnII GATC 2 cut(s) 27, 67
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
FaiI YATR 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 159, 186
Fsp4HI GCNGC 2 cut(s) 159, 186
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 159, 186
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 191
HapII CCGG 2 cut(s) 11, 218
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 5 cut(s) 14, 53, 94, 119, 174
HpaII CCGG 2 cut(s) 11, 218
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 6 cut(s) 19, 41, 58, 72, 99, 124
Hpy188III TCNNGA 4 cut(s) 11, 31, 171, 218
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 243
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 1 cut(s) 188
KasI GGCGCC 1 cut(s) 187
Kpn2I TCCGGA 2 cut(s) 10, 217
Kzo9I GATC 2 cut(s) 27, 67
LmnI GCTCC 3 cut(s) 13, 41, 184
LpnPI CCDG 6 cut(s) 16, 24, 75, 104, 195, 231
Lsp1109I GCAGC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 104
MalI GATC 2 cut(s) 29, 69
MboI GATC 2 cut(s) 27, 67
MboII GAAGA 2 cut(s) 40, 136
MflI RGATCY 1 cut(s) 27
MluCI AATT 1 cut(s) 247
Mly113I GGCGCC 1 cut(s) 188
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 6 cut(s) 13, 88, 124, 127, 200, 201
MroI TCCGGA 2 cut(s) 10, 217
MspA1I CMGCKG 2 cut(s) 158, 185
MspI CCGG 2 cut(s) 11, 218
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 188
NdeII GATC 2 cut(s) 27, 67
NlaIV GGNNCC 2 cut(s) 9, 189
NmuCI GTSAC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 4 cut(s) 53, 94, 119, 174
PkrI GCNGC 2 cut(s) 160, 187
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 9, 189
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 158
SatI GCNGC 2 cut(s) 159, 186
Sau3AI GATC 2 cut(s) 27, 67
SchI GAGTC 1 cut(s) 8
SetI ASST 3 cut(s) 24, 46, 160
SfoI GGCGCC 1 cut(s) 189
Sse9I AATT 1 cut(s) 247
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 187
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 5 cut(s) 51, 66, 172, 193, 234
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 4 cut(s) 53, 94, 119, 174
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 104
TspRI CASTG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.