Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Forward (+)

35205825 .. 35212304

Gene Structure 6480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACTGATGTTCAGATTGGTGAGAAGCAAATATTGAGAAGGTGTGAGCTTCAAGGCAAAGGCTCTTTGTGGTGGTTGGTAGAGGAGCTATATGTTTTGCTGCAATCTGAGGGATTGATAGGTGCTCGACATTACCTACCTTGTGCTCATGCTGCAATAAAATACGTCATTCTGGCTATCTCTAGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACATAGGATATTGTTTCTTTTAGAGATGGTAGAGCCATTCCTTGATCCCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATATGATCAGTACAGCAGTGCAGAAACCAGTAGTTCCTTCACTAGAATCTGAATGGAGGCGTGGATCAGTTGCTTCTAGTGCTTATTGGGATTTGGGTGGAAACAAGGTAGTGAAGGTAGTGAAGGCAAACCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.59

Weight (kDa)

8.32

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	2 cut(s)	263, 436
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	53, 289
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	49, 88
AluI	AGCT	2 cut(s)	49, 88
Alw21I	GWGCWC	2 cut(s)	127, 148
AlwI	GGATC	2 cut(s)	263, 436
ApeKI	GCWGC	2 cut(s)	100, 152
AseI	ATTAAT	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	127, 148
BbvI	GCAGC	2 cut(s)	87, 139
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	369
BfaI	CTAG	3 cut(s)	183, 407, 441
BfmI	CTRYAG	1 cut(s)	276
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	2 cut(s)	101, 153
BlsI	GCNGC	2 cut(s)	102, 154
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	87, 139
BsgI	GTGCAG	1 cut(s)	404
BsiHKAI	GWGCWC	2 cut(s)	127, 148
BslI	CCNNNNNNNGG	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	127, 148
Bsp143I	GATC	4 cut(s)	268, 310, 369, 428
BspACI	CCGC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	100
BspPI	GGATC	2 cut(s)	263, 436
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	268, 310, 369, 428
Bst2UI	CCWGG	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	4 cut(s)	271, 313, 372, 431
BstMBI	GATC	4 cut(s)	268, 310, 369, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 443
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	87, 139
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	6 cut(s)	49, 63, 88, 176, 259, 302
CviKI_1	RGCY	6 cut(s)	49, 63, 88, 176, 259, 302
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	270, 312, 371, 430
DpnII	GATC	4 cut(s)	268, 310, 369, 428
Eco32I	GATATC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	1 cut(s)	152
FaiI	YATR	9 cut(s)	91, 93, 150, 189, 191, 213, 228, 325, 368
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	189
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	101, 153
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	101, 153
FspBI	CTAG	3 cut(s)	183, 407, 441
GluI	GCNGC	2 cut(s)	101, 153
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	285, 410
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	15, 109, 415
Hpy188III	TCNNGA	1 cut(s)	329
HpyAV	CCTTC	4 cut(s)	33, 411, 472, 481
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	4 cut(s)	103, 155, 323, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 443
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	268, 310, 369, 428
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	6 cut(s)	158, 188, 215, 323, 342, 405
Lsp1109I	GCAGC	2 cut(s)	87, 139
MaeI	CTAG	3 cut(s)	183, 407, 441
MaeII	ACGT	1 cut(s)	165
MalI	GATC	4 cut(s)	270, 312, 371, 430
MboI	GATC	4 cut(s)	268, 310, 369, 428
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	127, 148
MluCI	AATT	1 cut(s)	346
MnlI	CCTC	3 cut(s)	76, 103, 414
MseI	TTAA	2 cut(s)	222, 363
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	152, 443
NdeI	CATATG	1 cut(s)	189
NdeII	GATC	4 cut(s)	268, 310, 369, 428
NlaIII	CATG	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	285, 410
PkrI	GCNGC	2 cut(s)	102, 154
PshBI	ATTAAT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	222, 363
SatI	GCNGC	2 cut(s)	101, 153
Sau3AI	GATC	4 cut(s)	268, 310, 369, 428
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	127, 148
SetI	ASST	9 cut(s)	44, 51, 90, 124, 138, 142, 168, 474, 483
SfcI	CTRYAG	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	1 cut(s)	273
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	3 cut(s)	183, 407, 441
StyD4I	CCNGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	2 cut(s)	285, 410
Tru1I	TTAA	2 cut(s)	222, 363
Tru9I	TTAA	2 cut(s)	222, 363
TscAI	CASTG	1 cut(s)	387
TseI	GCWGC	2 cut(s)	100, 152
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	387
VspI	ATTAAT	1 cut(s)	363
XspI	CTAG	3 cut(s)	183, 407, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.