Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

26213052 .. 26215722

Gene Structure 2671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAAGCAAGTGCCATTCCTTTTGCGGCGTTGACTGCTTGGCGTGCTCTAAAAGGTACTGCAAGGATATCTAAGGGGCAAAGGCTCTTTGTGGTGGATGGTGGAGGAGCTGGTGCTCGACATTACCTGGCTTGTGCTCGTGTTGCAACAAAATACATCATTCTGGCAATCTCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAAGTTAAGCACAGGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCAGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGACCTATCTTGTGCATATCCAGAAACGCAGGAACTGAATTGTGCTATTGCTATTAATGTGATCCGTACAGTAGTGCAGAAACCAATAGTTCTTCCTTCACTGGAATCTGAATGGAGGCGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.01

Weight (kDa)

9.58

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	3 cut(s)	254, 355, 430
AfaI	GTAC	2 cut(s)	58, 367
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	126, 192
AluBI	AGCT	2 cut(s)	110, 266
AluI	AGCT	2 cut(s)	110, 266
Alw21I	GWGCWC	3 cut(s)	49, 118, 139
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	254, 355, 430
AlwNI	CAGNNNCTG	1 cut(s)	334
AseI	ATTAAT	1 cut(s)	354
AspA2I	CCTAGG	1 cut(s)	434
AvrII	CCTAGG	1 cut(s)	434
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	3 cut(s)	49, 118, 139
BccI	CCATC	1 cut(s)	92
BciT130I	CCWGG	2 cut(s)	128, 194
BciVI	GTATCC	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	2 cut(s)	245, 435
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	27
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	128, 194
BmrFI	CCNGG	2 cut(s)	128, 194
BmsI	GCATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	193, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	128, 194
BseDI	CCNNGG	2 cut(s)	193, 434
BseGI	GGATG	2 cut(s)	103, 190
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	395
BsiHKAI	GWGCWC	3 cut(s)	49, 118, 139
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	3 cut(s)	49, 118, 139
Bsp143I	GATC	3 cut(s)	259, 360, 422
BspACI	CCGC	1 cut(s)	26
BspPI	GGATC	3 cut(s)	254, 355, 430
BspTNI	GGTCTC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	2 cut(s)	193, 434
BssMI	GATC	3 cut(s)	259, 360, 422
BssSI	CACGAG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	434
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	128, 194
Bst4CI	ACNGT	2 cut(s)	228, 370
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	103, 190
BstKTI	GATC	3 cut(s)	262, 363, 425
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	259, 360, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 143
BstNI	CCWGG	2 cut(s)	128, 194
BstSCI	CCNGG	2 cut(s)	126, 192
BstSFI	CTRYAG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	103, 190
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	334
Csp6I	GTAC	2 cut(s)	57, 366
CviJI	RGCY	6 cut(s)	85, 110, 131, 250, 266, 293
CviKI_1	RGCY	6 cut(s)	85, 110, 131, 250, 266, 293
CviQI	GTAC	2 cut(s)	57, 366
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	261, 362, 424
DpnII	GATC	3 cut(s)	259, 360, 422
Eco130I	CCWWGG	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	294
Eco32I	GATATC	2 cut(s)	69, 190
EcoRII	CCWGG	2 cut(s)	126, 192
EcoRV	GATATC	2 cut(s)	69, 190
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	4 cut(s)	180, 182, 204, 316
FauNDI	CATATG	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	2 cut(s)	110, 197
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	245, 435
GluI	GCNGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	276, 404
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	405
HpyCH4III	ACNGT	2 cut(s)	228, 370
HpyCH4V	TGCA	4 cut(s)	62, 146, 314, 376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 143
HpyF3I	CTNAG	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	259, 360, 422
LmnI	GCTCC	2 cut(s)	107, 436
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	2 cut(s)	245, 435
MalI	GATC	3 cut(s)	261, 362, 424
MboI	GATC	3 cut(s)	259, 360, 422
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	3 cut(s)	49, 118, 139
MluCI	AATT	1 cut(s)	337
MnlI	CCTC	2 cut(s)	98, 408
MseI	TTAA	2 cut(s)	213, 354
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	128, 194
MvaI	CCWGG	2 cut(s)	128, 194
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 143
NdeI	CATATG	1 cut(s)	180
NdeII	GATC	3 cut(s)	259, 360, 422
PfeI	GAWTC	2 cut(s)	276, 404
PkrI	GCNGC	1 cut(s)	28
PshBI	ATTAAT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	126, 192
PspGI	CCWGG	2 cut(s)	126, 192
PstNI	CAGNNNCTG	1 cut(s)	334
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	2 cut(s)	58, 367
RsaNI	GTAC	2 cut(s)	57, 366
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	213, 354
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	259, 360, 422
ScrFI	CCNGG	2 cut(s)	128, 194
SduI	GDGCHC	3 cut(s)	49, 118, 139
SetI	ASST	6 cut(s)	58, 112, 129, 268, 306, 440
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	245, 435
StyD4I	CCNGG	2 cut(s)	126, 192
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	228, 370
TaqI	TCGA	1 cut(s)	118
TasI	AATT	1 cut(s)	337
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	276, 404
Tru1I	TTAA	2 cut(s)	213, 354
Tru9I	TTAA	2 cut(s)	213, 354
TscAI	CASTG	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	354
XmaJI	CCTAGG	1 cut(s)	434
XspI	CTAG	2 cut(s)	245, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.