Rh4DG255300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002855
Physical Location & Seq
Reverse (-)
47074761 .. 47081492
6732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG255300.1

Sequence Viewer

Length: 333 bp
ATGGGTGCTCGACATTACCTACCTTGTGCTCGTGCTGCAATAAAATATGTCATTCTGGCTATCTTTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACATGATACTATTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAAAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACATTAGTGCAAAAACCAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGCGTGGATCAGCTGCTCCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.37

Weight (kDa)

9.47

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AclWI GGATC 3 cut(s) 146, 247, 322
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 161
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw21I GWGCWC 2 cut(s) 10, 31
AlwI GGATC 3 cut(s) 146, 247, 322
ApeKI GCWGC 2 cut(s) 35, 320
AseI ATTAAT 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 326
AvrII CCTAGG 1 cut(s) 326
BauI CACGAG 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 10, 31
BbvI GCAGC 2 cut(s) 22, 307
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 3 cut(s) 137, 293, 327
BfmI CTRYAG 1 cut(s) 159
BglII AGATCT 1 cut(s) 193
BisI GCNGC 2 cut(s) 36, 321
BlnI CCTAGG 1 cut(s) 326
BlsI GCNGC 2 cut(s) 37, 322
Bme1390I CCNGG 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 85, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 85, 326
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 22, 307
BsiHKAI GWGCWC 2 cut(s) 10, 31
BslI CCNNNNNNNGG 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 10, 31
Bsp143I GATC 4 cut(s) 151, 193, 252, 314
BspACI CCGC 1 cut(s) 156
BspPI GGATC 3 cut(s) 146, 247, 322
BssECI CCNNGG 2 cut(s) 85, 326
BssMI GATC 4 cut(s) 151, 193, 252, 314
BssSI CACGAG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 4 cut(s) 154, 196, 255, 317
BstMBI GATC 4 cut(s) 151, 193, 252, 314
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 22, 307
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 82
Csp6I GTAC 1 cut(s) 258
CviAII CATG 1 cut(s) 112
CviJI RGCY 4 cut(s) 59, 142, 185, 320
CviKI_1 RGCY 4 cut(s) 59, 142, 185, 320
CviQI GTAC 1 cut(s) 258
DpnI GATC 4 cut(s) 153, 195, 254, 316
DpnII GATC 4 cut(s) 151, 193, 252, 314
Eco130I CCWWGG 1 cut(s) 326
Eco32I GATATC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 84
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 1 cut(s) 115
FaiI YATR 6 cut(s) 48, 72, 74, 96, 113, 208
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 163
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 36, 321
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 36, 321
FspBI CTAG 3 cut(s) 137, 293, 327
GluI GCNGC 2 cut(s) 36, 321
Hin1II CATG 1 cut(s) 115
HinfI GANTC 2 cut(s) 168, 296
Hpy188I TCNGA 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 38, 206, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 4 cut(s) 151, 193, 252, 314
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 5 cut(s) 41, 71, 98, 206, 288
Lsp1109I GCAGC 2 cut(s) 22, 307
LweI GCATC 1 cut(s) 123
MaeI CTAG 3 cut(s) 137, 293, 327
MalI GATC 4 cut(s) 153, 195, 254, 316
MboI GATC 4 cut(s) 151, 193, 252, 314
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 2 cut(s) 10, 31
MluCI AATT 1 cut(s) 229
MnlI CCTC 1 cut(s) 300
MseI TTAA 2 cut(s) 105, 246
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 2 cut(s) 158, 320
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeI CATATG 1 cut(s) 72
NdeII GATC 4 cut(s) 151, 193, 252, 314
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 2 cut(s) 168, 296
PkrI GCNGC 2 cut(s) 37, 322
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PsuI RGATCY 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 105, 246
SatI GCNGC 2 cut(s) 36, 321
Sau3AI GATC 4 cut(s) 151, 193, 252, 314
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 2 cut(s) 10, 31
SetI ASST 4 cut(s) 21, 25, 322, 332
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 156
SspMI CTAG 3 cut(s) 137, 293, 327
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 326
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 229
TfiI GAWTC 2 cut(s) 168, 296
Tru1I TTAA 2 cut(s) 105, 246
Tru9I TTAA 2 cut(s) 105, 246
TseI GCWGC 2 cut(s) 35, 320
TspGWI ACGGA 2 cut(s) 241, 245
VspI ATTAAT 1 cut(s) 246
XmaJI CCTAGG 1 cut(s) 326
XspI CTAG 3 cut(s) 137, 293, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.