Rh4AG147400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002855
Physical Location & Seq
Reverse (-)
37204886 .. 37206660
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG147400.1

Sequence Viewer

Length: 345 bp
ATGACTACTATCTGGGGTGCTCGACATTACCCACCTTGTGCTCGTGCTGCAATAAAATATGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACAGGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCCGCTGTAGGCAAATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCTAGAAAAGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATTCGTACAGCAGTGCATAAACTAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGCATGGATCAGTTGCTCCTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.83

Weight (kDa)

9.27

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AclWI GGATC 2 cut(s) 158, 334
AcsI RAATTY 1 cut(s) 179
AdeI CACNNNGTG 1 cut(s) 38
AfaI GTAC 1 cut(s) 271
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 184
AjnI CCWGG 1 cut(s) 96
Alw21I GWGCWC 2 cut(s) 22, 43
AlwI GGATC 2 cut(s) 158, 334
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 179
AseI ATTAAT 1 cut(s) 258
AspA2I CCTAGG 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 338
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 22, 43
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 98
BciVI GTATCC 1 cut(s) 120
BfaI CTAG 5 cut(s) 149, 224, 287, 305, 339
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 1 cut(s) 120
BglII AGATCT 1 cut(s) 205
BisI GCNGC 1 cut(s) 48
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 97, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 97, 338
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 22, 43
BslI CCNNNNNNNGG 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 22, 43
Bsp143I GATC 3 cut(s) 163, 205, 326
BspACI CCGC 1 cut(s) 168
BspPI GGATC 2 cut(s) 158, 334
BssECI CCNNGG 2 cut(s) 97, 338
BssMI GATC 3 cut(s) 163, 205, 326
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 338
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 132
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 3 cut(s) 166, 208, 329
BstMBI GATC 3 cut(s) 163, 205, 326
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Csp6I GTAC 1 cut(s) 270
CviAII CATG 1 cut(s) 323
CviJI RGCY 3 cut(s) 71, 154, 197
CviKI_1 RGCY 3 cut(s) 71, 154, 197
CviQI GTAC 1 cut(s) 270
DpnI GATC 3 cut(s) 165, 207, 328
DpnII GATC 3 cut(s) 163, 205, 326
DraIII CACNNNGTG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 338
Eco32I GATATC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 1 cut(s) 326
FaiI YATR 7 cut(s) 60, 84, 86, 108, 220, 282, 324
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 5 cut(s) 149, 224, 287, 305, 339
GluI GCNGC 1 cut(s) 48
Hin1II CATG 1 cut(s) 326
HinfI GANTC 2 cut(s) 265, 308
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 50, 218, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 326
Kzo9I GATC 3 cut(s) 163, 205, 326
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 6 cut(s) 53, 63, 83, 109, 110, 218
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 135
MaeI CTAG 5 cut(s) 149, 224, 287, 305, 339
MalI GATC 3 cut(s) 165, 207, 328
MboI GATC 3 cut(s) 163, 205, 326
MboII GAAGA 1 cut(s) 287
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 2 cut(s) 22, 43
MluCI AATT 2 cut(s) 179, 241
MnlI CCTC 1 cut(s) 312
MseI TTAA 2 cut(s) 117, 258
MslI CAYNNNNRTG 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeI CATATG 1 cut(s) 84
NdeII GATC 3 cut(s) 163, 205, 326
NlaIII CATG 1 cut(s) 326
PfeI GAWTC 2 cut(s) 265, 308
PkrI GCNGC 1 cut(s) 49
PshBI ATTAAT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 117, 258
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 3 cut(s) 163, 205, 326
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 2 cut(s) 22, 43
SetI ASST 2 cut(s) 37, 344
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 2 cut(s) 179, 241
SsiI CCGC 1 cut(s) 168
SspMI CTAG 5 cut(s) 149, 224, 287, 305, 339
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 179, 241
TfiI GAWTC 2 cut(s) 265, 308
Tru1I TTAA 2 cut(s) 117, 258
Tru9I TTAA 2 cut(s) 117, 258
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 253
TspRI CASTG 1 cut(s) 282
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 5 cut(s) 149, 224, 287, 305, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.