Rorug03G0328400

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002855
Physical Location & Seq
Reverse (-)
36456049 .. 36456507
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0328400.1

Sequence Viewer

Length: 459 bp
ATGCTCGACAACAAAAAAGTTGCGGCAGGGTCCGTTATTCGAGATAATCAAGGTCTCCCTATCATTGCTGGTACAAGAAAAGTTGGTTTCTCTTCTGTTTCGGTTGTTGAGTGCAGTGCTCTAAGAGATGGCATTTATCATGTGCTTTGCTCAAACTACCGAAAATCTACGTCGAAGGTGATTCCAAGCTGGTCATTGACTCAATCAACAAAGTATGTTCCCCTCCTTGGAGAATCAGAATCCTTATCAAAGACATTCATTTCTCTAGCTTCTTACTTCGACAACATAAGTTTCAAACATGTTCCTCGTGAAGCTAACTTTGTGGCTGATGCAATTGCGAGTCTGGGTCATGATGCCATTCACCCCAAAGTTTGGTCCAAGAAGCTGCCTTTATCTGCTTTATCAGCCTTTAACCTTGACCAGTTCGGTTTAGGTTATTCTAGGGGTTTTGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.55

Weight (kDa)

9.45

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 7 - 114 4.8e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 372
AciI CCGC 1 cut(s) 23
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 227, 372
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 295
AluBI AGCT 4 cut(s) 189, 269, 314, 385
AluI AGCT 4 cut(s) 189, 269, 314, 385
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 385
AspS9I GGNCC 2 cut(s) 30, 375
AsuHPI GGTGA 2 cut(s) 190, 353
AvaII GGWCC 2 cut(s) 30, 375
BauI CACGAG 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 372
BccI CCATC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 266, 441
BisI GCNGC 2 cut(s) 24, 386
BlsI GCNGC 2 cut(s) 25, 387
Bme18I GGWCC 2 cut(s) 30, 375
BmgT120I GGNCC 2 cut(s) 30, 375
BmiI GGNNCC 1 cut(s) 31
BmsI GCATC 2 cut(s) 319, 343
BsaI GGTCTC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 226
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 372
Bse1I ACTGG 1 cut(s) 421
Bse3DI GCAATG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 227, 372
BseMI GCAATG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 421
BseXI GCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 227, 372
BsmAI GTCTC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 121
BspACI CCGC 1 cut(s) 23
BspHI TCATGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 63
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 226
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 306
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 59
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 121
CciI TCATGA 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 30, 375
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 140, 299, 350
CviJI RGCY 6 cut(s) 189, 269, 314, 326, 385, 407
CviKI_1 RGCY 6 cut(s) 189, 269, 314, 326, 385, 407
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 59
Eco47I GGWCC 2 cut(s) 30, 375
EcoT14I CCWWGG 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 3 cut(s) 143, 302, 353
FaiI YATR 5 cut(s) 141, 216, 287, 300, 351
FatI CATG 3 cut(s) 139, 298, 349
Fnu4HI GCNGC 2 cut(s) 24, 386
Fsp4HI GCNGC 2 cut(s) 24, 386
FspBI CTAG 2 cut(s) 266, 441
GluI GCNGC 2 cut(s) 24, 386
Hin1II CATG 3 cut(s) 143, 302, 353
HinfI GANTC 5 cut(s) 181, 199, 233, 239, 340
HphI GGTGA 2 cut(s) 190, 353
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 3 cut(s) 41, 308, 350
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 114, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 3 cut(s) 143, 302, 353
LpnPI CCDG 5 cut(s) 12, 54, 175, 329, 434
Lsp1109I GCAGC 1 cut(s) 372
LweI GCATC 2 cut(s) 319, 343
MaeI CTAG 2 cut(s) 266, 441
MaeII ACGT 1 cut(s) 170
MboII GAAGA 1 cut(s) 84
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 1 cut(s) 333
MlyI GAGTC 2 cut(s) 193, 349
MnlI CCTC 2 cut(s) 233, 315
MseI TTAA 1 cut(s) 411
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 404
NlaIII CATG 3 cut(s) 143, 302, 353
NlaIV GGNNCC 1 cut(s) 31
NspI RCATGY 1 cut(s) 302
PagI TCATGA 1 cut(s) 349
PciI ACATGT 1 cut(s) 298
PfeI GAWTC 3 cut(s) 181, 233, 239
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 2 cut(s) 25, 387
PleI GAGTC 2 cut(s) 193, 348
PpsI GAGTC 2 cut(s) 193, 348
PscI ACATGT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 30, 375
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 24, 386
Sau96I GGNCC 2 cut(s) 30, 375
SchI GAGTC 2 cut(s) 193, 349
SduI GDGCHC 1 cut(s) 121
SetI ASST 9 cut(s) 55, 173, 180, 191, 271, 316, 387, 417, 436
SfaNI GCATC 2 cut(s) 319, 343
SinI GGWCC 2 cut(s) 30, 375
Sse9I AATT 1 cut(s) 333
SsiI CCGC 1 cut(s) 23
SspMI CTAG 2 cut(s) 266, 441
StyI CCWWGG 1 cut(s) 226
TaiI ACGT 1 cut(s) 173
TaqI TCGA 4 cut(s) 6, 40, 173, 279
TasI AATT 1 cut(s) 333
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 181, 233, 239
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 385
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 30, 375
XceI RCATGY 1 cut(s) 302
XspI CTAG 2 cut(s) 266, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.