Rw1G013890

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002855
Physical Location & Seq
Forward (+)
30946848 .. 30948240
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013890.1

Sequence Viewer

Length: 744 bp
ATGGAGGTAGAGTTCGAAGCGAGAGTGAAGCCTCTCGAGTACAAAGTGAAGGCAATGTCACGTGAGTCCCCGTCGCAGAAGGCCGGTCACGTGCTCGACGCCGACCTCCGCTCTCACTGGTCCACCGCCACCAACACCAAGGAGTGGATCCTCCTCGAACTCAACGAACCTTGCTTGTTATCTCACATCAGAATCTACAACAAGTCCGTCCTCGAATGGGAAATCTCTGTTGGCTTGCGTTACAAGCCAGAGACGTTTGTAAAGGTTCGCCCGCGTTGTGAAGCGCCGCGGCGGGATATGGTGTATCCCACGAACTACACCCCGTGCCGCTATGTGCGAATATCTTGTTTGAGGGGGAATCCCATTGCCATTTTCTTCATACAGCTTATTGGGGTTTCTGTGACTGGACTGGAACCGGAATTTCAACCGGTTGTTAACCACTTGTTACCATCTATTATATCTCACAAACAAGATGCTCATGATATGCATCTTCAGACATGGCAAGTCGGTTGCTTGTGTTCCTTACCCAACTTGAGGCAGATCTTAACAGCTTCGTGGATGCTCCGGAACCAAACTTACGTTTTCTTGCTATGCTTGCCGGCCCATTTTATCCAATACTCGATCTTGGCAAAGAAAGGCATGTACTTGCTTTATATCTTCCTCACTGTTTTTCCAAATTCAGCTTTCAATGATCTTGCATGGTTGTTATTAATGATGTCTATGACTCTATGCAATAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

28.66

Weight (kDa)

8.75

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 2 cut(s) 274, 289
AccIII TCCGGA 1 cut(s) 564
AciI CCGC 7 cut(s) 109, 126, 272, 287, 289, 292, 328
AclWI GGATC 2 cut(s) 142, 155
AcsI RAATTY 2 cut(s) 419, 676
AcuI CTGAAG 1 cut(s) 476
AcvI CACGTG 2 cut(s) 62, 91
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 2 cut(s) 41, 644
AfiI CCNNNNNNNGG 3 cut(s) 144, 217, 534
AgeI ACCGGT 1 cut(s) 427
AgsI TTSAA 2 cut(s) 425, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 385, 551, 683
AluI AGCT 3 cut(s) 385, 551, 683
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 245
AlwI GGATC 2 cut(s) 142, 155
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 564
AoxI GGCC 2 cut(s) 81, 600
ApoI RAATTY 2 cut(s) 419, 676
AseI ATTAAT 1 cut(s) 710
AsiGI ACCGGT 1 cut(s) 427
AspLEI GCGC 1 cut(s) 286
AspS9I GGNCC 2 cut(s) 120, 601
AsuII TTCGAA 1 cut(s) 15
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 147
BbrPI CACGTG 2 cut(s) 62, 91
Bbv12I GWGCWC 1 cut(s) 96
BccI CCATC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 287
BfuI GTATCC 1 cut(s) 315
BglII AGATCT 1 cut(s) 540
BisI GCNGC 3 cut(s) 287, 290, 328
BlsI GCNGC 3 cut(s) 288, 291, 329
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 120, 601
BmiI GGNNCC 3 cut(s) 149, 414, 569
BmsI GCATC 3 cut(s) 463, 496, 549
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 553
BsaAI YACGTR 2 cut(s) 62, 91
BsaBI GATNNNNATC 1 cut(s) 486
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 138, 287
BsaWI WCCGGW 3 cut(s) 415, 427, 564
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 217, 534
Bse118I RCCGGY 3 cut(s) 83, 427, 598
Bse1I ACTGG 3 cut(s) 122, 409, 414
Bse3DI GCAATG 2 cut(s) 60, 363
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 138, 287
BseGI GGATG 1 cut(s) 564
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 144, 217, 534
BseMI GCAATG 2 cut(s) 60, 363
BseNI ACTGG 3 cut(s) 122, 409, 414
BseRI GAGGAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 274, 289
BshFI GGCC 2 cut(s) 83, 602
BshTI ACCGGT 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 5 cut(s) 84, 416, 428, 565, 599
BslFI GGGAC 1 cut(s) 52
BslI CCNNNNNNNGG 3 cut(s) 144, 217, 534
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 52
BsnI GGCC 2 cut(s) 83, 602
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 564
Bsp143I GATC 4 cut(s) 147, 540, 621, 691
BspACI CCGC 7 cut(s) 109, 126, 272, 287, 289, 292, 328
BspANI GGCC 2 cut(s) 83, 602
BspEI TCCGGA 1 cut(s) 564
BspFNI CGCG 2 cut(s) 274, 289
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 3 cut(s) 149, 414, 569
BspPI GGATC 2 cut(s) 142, 155
BspT104I TTCGAA 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 111
BsrDI GCAATG 2 cut(s) 60, 363
BsrFI RCCGGY 3 cut(s) 83, 427, 598
BsrI ACTGG 3 cut(s) 122, 409, 414
BssAI RCCGGY 3 cut(s) 83, 427, 598
BssECI CCNNGG 2 cut(s) 138, 287
BssMI GATC 4 cut(s) 147, 540, 621, 691
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 667
BstACI GRCGYC 1 cut(s) 99
BstBAI YACGTR 2 cut(s) 62, 91
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 4 cut(s) 236, 272, 596, 600
BstDSI CCRYGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 564
BstFNI CGCG 2 cut(s) 274, 289
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 4 cut(s) 150, 543, 624, 694
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 4 cut(s) 147, 540, 621, 691
BstMWI GCNNNNNNNGC 2 cut(s) 244, 595
BstNSI RCATGY 1 cut(s) 643
BstUI CGCG 2 cut(s) 274, 289
BstX2I RGATCY 2 cut(s) 147, 540
BstYI RGATCY 2 cut(s) 147, 540
BsuI GTATCC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 83, 602
BtgI CCRYGG 1 cut(s) 287
BtsCI GGATG 1 cut(s) 564
BtsIMutI CAGTG 2 cut(s) 115, 663
Cac8I GCNNGC 4 cut(s) 236, 272, 596, 600
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 286
Cfr10I RCCGGY 3 cut(s) 83, 427, 598
Cfr13I GGNCC 2 cut(s) 120, 601
Cfr42I CCGCGG 1 cut(s) 290
CseI GACGC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 40, 643
CspAI ACCGGT 1 cut(s) 427
CviAII CATG 4 cut(s) 479, 498, 640, 699
CviJI RGCY 8 cut(s) 31, 83, 234, 247, 385, 551, 602, 683
CviKI_1 RGCY 8 cut(s) 31, 83, 234, 247, 385, 551, 602, 683
CviQI GTAC 2 cut(s) 40, 643
DpnI GATC 4 cut(s) 149, 542, 623, 693
DpnII GATC 4 cut(s) 147, 540, 621, 691
DraIII CACNNNGTG 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 476
Eco72I CACGTG 2 cut(s) 62, 91
Eco88I CYCGRG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 4 cut(s) 482, 501, 643, 702
FaqI GGGAC 1 cut(s) 52
FatI CATG 4 cut(s) 478, 497, 639, 698
FauI CCCGC 2 cut(s) 279, 285
Fnu4HI GCNGC 3 cut(s) 287, 290, 328
FokI GGATG 1 cut(s) 571
Fsp4HI GCNGC 3 cut(s) 287, 290, 328
GlaI GCGC 1 cut(s) 285
GluI GCNGC 3 cut(s) 287, 290, 328
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 83, 602
HapII CCGG 5 cut(s) 84, 416, 428, 565, 599
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 4 cut(s) 482, 501, 643, 702
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 4 cut(s) 65, 192, 358, 724
HpaI GTTAAC 1 cut(s) 436
HpaII CCGG 5 cut(s) 84, 416, 428, 565, 599
Hpy166II GTNNAC 2 cut(s) 123, 436
Hpy188I TCNGA 2 cut(s) 191, 495
Hpy188III TCNNGA 3 cut(s) 35, 479, 565
Hpy8I GTNNAC 2 cut(s) 123, 436
Hpy99I CGWCG 2 cut(s) 76, 101
HpyAV CCTTC 2 cut(s) 43, 73
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 4 cut(s) 61, 90, 254, 579
HpyCH4V TGCA 3 cut(s) 487, 698, 732
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 595
HpySE526I ACGT 4 cut(s) 61, 90, 254, 579
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 4 cut(s) 482, 501, 643, 702
HspAI GCGC 1 cut(s) 284
Kpn2I TCCGGA 1 cut(s) 564
KroI GCCGGC 1 cut(s) 598
KroNI GCCGGC 1 cut(s) 600
KspAI GTTAAC 1 cut(s) 436
KspI CCGCGG 1 cut(s) 290
Kzo9I GATC 4 cut(s) 147, 540, 621, 691
LmnI GCTCC 1 cut(s) 567
LpnPI CCDG 9 cut(s) 97, 103, 261, 390, 395, 429, 441, 578, 612
LweI GCATC 3 cut(s) 463, 496, 549
MaeII ACGT 4 cut(s) 61, 90, 254, 579
MaeIII GTNAC 5 cut(s) 57, 86, 239, 400, 444
MalI GATC 4 cut(s) 149, 542, 623, 693
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 147, 540, 621, 691
MboII GAAGA 3 cut(s) 367, 482, 649
MflI RGATCY 2 cut(s) 147, 540
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 419, 676, 736
MlyI GAGTC 2 cut(s) 74, 718
MnlI CCTC 8 cut(s) 42, 116, 161, 164, 221, 345, 528, 671
Mph1103I ATGCAT 1 cut(s) 489
MroI TCCGGA 1 cut(s) 564
MroNI GCCGGC 1 cut(s) 598
MseI TTAA 3 cut(s) 435, 545, 710
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 5 cut(s) 84, 416, 428, 565, 599
MvnI CGCG 2 cut(s) 274, 289
MwoI GCNNNNNNNGC 2 cut(s) 244, 595
NaeI GCCGGC 1 cut(s) 600
NdeII GATC 4 cut(s) 147, 540, 621, 691
NgoMIV GCCGGC 1 cut(s) 598
NlaIII CATG 4 cut(s) 482, 501, 643, 702
NlaIV GGNNCC 3 cut(s) 149, 414, 569
NmuCI GTSAC 3 cut(s) 57, 86, 400
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 1 cut(s) 643
NspV TTCGAA 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 35
PagI TCATGA 1 cut(s) 478
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdiI GCCGGC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 192, 358
PflMI CCANNNNNTGG 1 cut(s) 144
PinAI ACCGGT 1 cut(s) 427
PkrI GCNGC 3 cut(s) 288, 291, 329
PleI GAGTC 2 cut(s) 73, 718
PmaCI CACGTG 2 cut(s) 62, 91
PmlI CACGTG 2 cut(s) 62, 91
PpsI GAGTC 2 cut(s) 73, 718
Ppu21I YACGTR 2 cut(s) 62, 91
PshBI ATTAAT 1 cut(s) 710
PspCI CACGTG 2 cut(s) 62, 91
PspN4I GGNNCC 3 cut(s) 149, 414, 569
PspPI GGNCC 2 cut(s) 120, 601
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PsuI RGATCY 2 cut(s) 147, 540
RsaI GTAC 2 cut(s) 41, 644
RsaNI GTAC 2 cut(s) 40, 643
SacII CCGCGG 1 cut(s) 290
SaqAI TTAA 3 cut(s) 435, 545, 710
SatI GCNGC 3 cut(s) 287, 290, 328
Sau3AI GATC 4 cut(s) 147, 540, 621, 691
Sau96I GGNCC 2 cut(s) 120, 601
SchI GAGTC 2 cut(s) 74, 718
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 3 cut(s) 463, 496, 549
Sfr274I CTCGAG 1 cut(s) 35
Sfr303I CCGCGG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 15
SgrBI CCGCGG 1 cut(s) 290
SinI GGWCC 1 cut(s) 120
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 35, 532
SmoI CTYRAG 2 cut(s) 35, 532
Sse9I AATT 3 cut(s) 419, 676, 736
SsiI CCGC 7 cut(s) 109, 126, 272, 287, 289, 292, 328
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 4 cut(s) 64, 93, 257, 582
TaqI TCGA 6 cut(s) 15, 36, 96, 156, 213, 620
TasI AATT 3 cut(s) 419, 676, 736
TatI WGTACW 2 cut(s) 39, 642
TauI GCSGC 3 cut(s) 289, 292, 330
TfiI GAWTC 2 cut(s) 192, 358
Tru1I TTAA 3 cut(s) 435, 545, 710
Tru9I TTAA 3 cut(s) 435, 545, 710
TscAI CASTG 2 cut(s) 122, 670
TseFI GTSAC 3 cut(s) 57, 86, 400
Tsp45I GTSAC 3 cut(s) 57, 86, 400
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 2 cut(s) 122, 670
Van91I CCANNNNNTGG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 120
VspI ATTAAT 1 cut(s) 710
XapI RAATTY 2 cut(s) 419, 676
XceI RCATGY 1 cut(s) 643
XhoI CTCGAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.