Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Forward (+)

35521675 .. 35523749

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG305600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAGGCTTCGGACCTCCCCAGCACGACACTGGCGCGCGAGTTCTCCAACTGCCGCGCCATGGAGGCTCCGGACTCGGAAGTTGAGATCCGGAGTTTCGGAGCTTTCTTCTATTCCGAGCCAGTCGATCTGAACGCCTCTCGGTTCAACGAGATTCTGAACGGTGACACTGTAAACGAATCGGAGACGGAGGAGGAGTTAGTCCTTTACACCACAACTGTACCTGGCTCTCGATTCGATTCAGCTGCGCCTCGATTTCGCCATGGAGGAGTTATTCCGGATTTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.64

Weight (kDa)

4.23

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	37, 39, 57
AccIII	TCCGGA	3 cut(s)	70, 90, 277
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	82
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	2 cut(s)	104, 245
AluI	AGCT	2 cut(s)	104, 245
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	82
Aor13HI	TCCGGA	3 cut(s)	70, 90, 277
ApeKI	GCWGC	1 cut(s)	245
AspLEI	GCGC	4 cut(s)	37, 39, 59, 250
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	13
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BbvI	GCAGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	55, 246
BlsI	GCNGC	2 cut(s)	56, 247
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	60, 262
BsaWI	WCCGGW	3 cut(s)	70, 90, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	36, 122
BseAI	TCCGGA	3 cut(s)	70, 90, 277
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	60, 262
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	36, 122
BsePI	GCGCGC	1 cut(s)	35
BseRI	GAGGAG	3 cut(s)	206, 209, 282
BseXI	GCAGC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	20
Bsh1236I	CGCG	3 cut(s)	37, 39, 57
BsiSI	CCGG	3 cut(s)	71, 91, 278
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
Bsp13I	TCCGGA	3 cut(s)	70, 90, 277
Bsp143I	GATC	2 cut(s)	87, 127
Bsp19I	CCATGG	2 cut(s)	60, 262
BspACI	CCGC	1 cut(s)	55
BspEI	TCCGGA	3 cut(s)	70, 90, 277
BspFNI	CGCG	3 cut(s)	37, 39, 57
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	36, 122
BssECI	CCNNGG	2 cut(s)	60, 262
BssHII	GCGCGC	1 cut(s)	35
BssMI	GATC	2 cut(s)	87, 127
BssT1I	CCWWGG	2 cut(s)	60, 262
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	164, 172, 220
BstC8I	GCNNGC	1 cut(s)	37
BstDSI	CCRYGG	2 cut(s)	60, 262
BstFNI	CGCG	3 cut(s)	37, 39, 57
BstHHI	GCGC	4 cut(s)	37, 39, 59, 250
BstKTI	GATC	2 cut(s)	90, 130
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	87, 127
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	3 cut(s)	37, 39, 57
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtgI	CCRYGG	2 cut(s)	60, 262
BtsIMutI	CAGTG	2 cut(s)	29, 168
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	4 cut(s)	37, 39, 59, 250
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	61, 263
CviJI	RGCY	6 cut(s)	8, 68, 104, 121, 228, 245
CviKI_1	RGCY	6 cut(s)	8, 68, 104, 121, 228, 245
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	2 cut(s)	89, 129
DpnII	GATC	2 cut(s)	87, 127
Eco130I	CCWWGG	2 cut(s)	60, 262
Eco47I	GGWCC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	2 cut(s)	60, 262
ErhI	CCWWGG	2 cut(s)	60, 262
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	64, 266
FaiI	YATR	2 cut(s)	62, 264
FatI	CATG	2 cut(s)	60, 262
Fnu4HI	GCNGC	2 cut(s)	55, 246
Fsp4HI	GCNGC	2 cut(s)	55, 246
FspBI	CTAG	1 cut(s)	289
GlaI	GCGC	4 cut(s)	36, 38, 58, 249
GluI	GCNGC	2 cut(s)	55, 246
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	3 cut(s)	71, 91, 278
HhaI	GCGC	4 cut(s)	37, 39, 59, 250
Hin1II	CATG	2 cut(s)	64, 266
Hin6I	GCGC	4 cut(s)	35, 37, 57, 248
HinP1I	GCGC	4 cut(s)	35, 37, 57, 248
HinfI	GANTC	5 cut(s)	74, 154, 179, 234, 239
HpaII	CCGG	3 cut(s)	71, 91, 278
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	7 cut(s)	13, 79, 101, 118, 132, 159, 184
Hpy188III	TCNNGA	4 cut(s)	71, 91, 231, 278
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	164, 172, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	64, 266
HspAI	GCGC	4 cut(s)	35, 37, 57, 248
Kpn2I	TCCGGA	3 cut(s)	70, 90, 277
Kzo9I	GATC	2 cut(s)	87, 127
LmnI	GCTCC	2 cut(s)	73, 101
LpnPI	CCDG	7 cut(s)	17, 34, 84, 104, 135, 210, 237
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	89, 129
MboI	GATC	2 cut(s)	87, 127
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	26, 58, 148, 184, 187, 260, 261
MroI	TCCGGA	3 cut(s)	70, 90, 277
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	3 cut(s)	71, 91, 278
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	3 cut(s)	37, 39, 57
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	2 cut(s)	60, 262
NdeII	GATC	2 cut(s)	87, 127
NlaIII	CATG	2 cut(s)	64, 266
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	164
PauI	GCGCGC	1 cut(s)	35
PfeI	GAWTC	4 cut(s)	154, 179, 234, 239
PkrI	GCNGC	2 cut(s)	56, 247
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	87
PteI	GCGCGC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SatI	GCNGC	2 cut(s)	55, 246
Sau3AI	GATC	2 cut(s)	87, 127
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	4 cut(s)	18, 106, 226, 247
SinI	GGWCC	1 cut(s)	13
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	223
StyI	CCWWGG	2 cut(s)	60, 262
TaaI	ACNGT	3 cut(s)	164, 172, 220
TaqI	TCGA	4 cut(s)	126, 232, 237, 253
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	4 cut(s)	154, 179, 234, 239
TscAI	CASTG	2 cut(s)	36, 175
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	1 cut(s)	245
Tsp45I	GTSAC	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	36, 175
VpaK11BI	GGWCC	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.