Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005445.1

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Forward (+)

38865 .. 40060

Gene Structure 1196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005445.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgctagagccattccttgatccagctgtaggtagattcaagggtaaaatagcctttggagacctatcttgtgcatatccagaaacgcaggaacggaattgtgctattgctattaatgtgatccgtacagtagtacagaaactagcagttcttccttcactggaatctgaatggaggcgtggatcagttgctcctagattgatctctctcatcactccagcagatctctctctctctctctctctctctgtccccagcacgaagccggcgctcgagttctccaactgccgcgccatggaggctccggactcggaggttgagatctggattatcagagctttcttcgattccgagccagtcgatctgaacgactctcggttcaaccggattctgaacggtgacgctgtaaatgaatcggagacgaagaaggagttagtcccctaccccacagctgcacttcgctctctattcgctccagcggcacctcgatttcgcagtggaggagttattccggatttctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.11

Weight (kDa)

5.12

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	2 cut(s)	304, 511
AciI	CCGC	2 cut(s)	289, 479
AclWI	GGATC	3 cut(s)	14, 115, 190
AfaI	GTAC	2 cut(s)	127, 135
AfiI	CCNNNNNNNGG	2 cut(s)	29, 295
AgsI	TTSAA	2 cut(s)	40, 382
AluBI	AGCT	3 cut(s)	26, 338, 452
AluI	AGCT	3 cut(s)	26, 338, 452
Alw26I	GTCTC	2 cut(s)	54, 413
AlwI	GGATC	3 cut(s)	14, 115, 190
Ama87I	CYCGRG	1 cut(s)	272
Aor13HI	TCCGGA	2 cut(s)	304, 511
ApeKI	GCWGC	1 cut(s)	452
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	2 cut(s)	271, 293
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	54, 413
BfaI	CTAG	3 cut(s)	5, 143, 195
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	2 cut(s)	223, 321
BisI	GCNGC	3 cut(s)	289, 453, 480
BlsI	GCNGC	3 cut(s)	290, 454, 481
BmeT110I	CYCGRG	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	303, 483
BpmI	CTGGAG	2 cut(s)	201, 459
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	3 cut(s)	304, 384, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 295
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	165, 356
BseAI	TCCGGA	2 cut(s)	304, 511
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	29, 295
BseNI	ACTGG	2 cut(s)	165, 356
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	291
BshNI	GGYRCC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	4 cut(s)	266, 305, 385, 512
BslFI	GGGAC	2 cut(s)	236, 422
BslI	CCNNNNNNNGG	2 cut(s)	29, 295
BsmAI	GTCTC	2 cut(s)	54, 413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	2 cut(s)	236, 422
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	272
Bsp13I	TCCGGA	2 cut(s)	304, 511
Bsp143I	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	2 cut(s)	289, 479
BspEI	TCCGGA	2 cut(s)	304, 511
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	303, 483
BspPI	GGATC	3 cut(s)	14, 115, 190
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	165, 356
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	130, 398
BstC8I	GCNNGC	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	2 cut(s)	271, 293
BstKTI	GATC	7 cut(s)	22, 123, 185, 204, 226, 324, 364
BstMAI	GTCTC	2 cut(s)	54, 413
BstMBI	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 479
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	223, 321
BstYI	RGATCY	2 cut(s)	223, 321
BtgI	CCRYGG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	158, 502
Cac8I	GCNNGC	1 cut(s)	267
CfoI	GCGC	2 cut(s)	271, 293
Cfr10I	RCCGGY	1 cut(s)	265
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	126, 134
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	8 cut(s)	10, 26, 53, 265, 302, 338, 355, 452
CviKI_1	RGCY	8 cut(s)	10, 26, 53, 265, 302, 338, 355, 452
CviQI	GTAC	2 cut(s)	126, 134
DpnI	GATC	7 cut(s)	21, 122, 184, 203, 225, 323, 363
DpnII	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
Eco130I	CCWWGG	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	54
Eco88I	CYCGRG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	1 cut(s)	298
FaiI	YATR	3 cut(s)	76, 296, 523
FaqI	GGGAC	2 cut(s)	236, 422
FatI	CATG	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	289, 453, 480
Fsp4HI	GCNGC	3 cut(s)	289, 453, 480
FspBI	CTAG	3 cut(s)	5, 143, 195
GlaI	GCGC	2 cut(s)	270, 292
GluI	GCNGC	3 cut(s)	289, 453, 480
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	201, 459
HaeII	RGCGCY	1 cut(s)	272
HapII	CCGG	4 cut(s)	266, 305, 385, 512
HgaI	GACGC	1 cut(s)	410
HhaI	GCGC	2 cut(s)	271, 293
Hin1II	CATG	1 cut(s)	298
Hin6I	GCGC	2 cut(s)	269, 291
HinP1I	GCGC	2 cut(s)	269, 291
HinfI	GANTC	7 cut(s)	36, 164, 308, 347, 371, 388, 413
HpaII	CCGG	4 cut(s)	266, 305, 385, 512
HphI	GGTGA	1 cut(s)	410
Hpy188I	TCNGA	7 cut(s)	169, 313, 335, 352, 366, 393, 418
Hpy188III	TCNNGA	4 cut(s)	80, 305, 325, 512
HpyAV	CCTTC	2 cut(s)	165, 421
HpyCH4III	ACNGT	2 cut(s)	130, 398
HpyCH4V	TGCA	2 cut(s)	74, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 479
Hsp92II	CATG	1 cut(s)	298
HspAI	GCGC	2 cut(s)	269, 291
Kpn2I	TCCGGA	2 cut(s)	304, 511
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
LmnI	GCTCC	3 cut(s)	196, 307, 478
Lsp1109I	GCAGC	1 cut(s)	439
MaeI	CTAG	3 cut(s)	5, 143, 195
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	7 cut(s)	21, 122, 184, 203, 225, 323, 363
MboI	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
MboII	GAAGA	3 cut(s)	143, 334, 436
MflI	RGATCY	2 cut(s)	223, 321
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	302, 365
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	5 cut(s)	168, 292, 307, 494, 495
MroI	TCCGGA	2 cut(s)	304, 511
MroNI	GCCGGC	1 cut(s)	265
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	3 cut(s)	26, 452, 479
MspI	CCGG	4 cut(s)	266, 305, 385, 512
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	299, 479
NaeI	GCCGGC	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	303, 483
NmuCI	GTSAC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PdiI	GCCGGC	1 cut(s)	267
PfeI	GAWTC	5 cut(s)	36, 164, 347, 388, 413
PkrI	GCNGC	3 cut(s)	290, 454, 481
PleI	GAGTC	2 cut(s)	302, 365
PpsI	GAGTC	2 cut(s)	302, 365
PshBI	ATTAAT	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	303, 483
PspXI	VCTCGAGB	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	223, 321
PvuII	CAGCTG	2 cut(s)	26, 452
RsaI	GTAC	2 cut(s)	127, 135
RsaNI	GTAC	2 cut(s)	126, 134
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	289, 453, 480
Sau3AI	GATC	7 cut(s)	19, 120, 182, 201, 223, 321, 361
SchI	GAGTC	2 cut(s)	302, 365
SetI	ASST	7 cut(s)	28, 34, 66, 318, 340, 454, 487
SfcI	CTRYAG	1 cut(s)	27
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	2 cut(s)	289, 479
SspMI	CTAG	3 cut(s)	5, 143, 195
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	130, 398
TaqI	TCGA	4 cut(s)	273, 345, 360, 487
TasI	AATT	1 cut(s)	97
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	2 cut(s)	291, 482
TfiI	GAWTC	5 cut(s)	36, 164, 347, 388, 413
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	165, 502
TseFI	GTSAC	1 cut(s)	398
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	398
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	2 cut(s)	109, 113
TspRI	CASTG	2 cut(s)	165, 502
VspI	ATTAAT	1 cut(s)	114
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	3 cut(s)	5, 143, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.