Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

46910230 .. 46914261

Gene Structure 4032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G022060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGTAGTAGAGCTTCCTCCGTTGTCTTCCGCAAACCCGGCGCTTATGACTTTCGCTATCGTCTCGTTAAGCAGGGTGCTCGACATTACCTACCTTGTGCTCGTGCTGCAATAAAATATGTCATTCTGGCTATCTCTGGTCATATGGATGATATCCTGGGAAAGTATAAGGAACTTAAACACATGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCCGGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACATCAGTGCAAAAACCAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGAGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.05

Weight (kDa)

9.63

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	3 cut(s)	218, 319, 394
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	226, 233
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	2 cut(s)	82, 103
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	3 cut(s)	218, 319, 394
ApeKI	GCWGC	1 cut(s)	107
AseI	ATTAAT	1 cut(s)	318
AspA2I	CCTAGG	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	39
AvrII	CCTAGG	1 cut(s)	398
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	82, 103
BbvI	GCAGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	3 cut(s)	209, 365, 399
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	45
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	398
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	2 cut(s)	39, 158
BmrFI	CCNGG	2 cut(s)	39, 158
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	157, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 233
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	157, 398
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	2 cut(s)	226, 233
BseRI	GAGGAG	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	82, 103
BsiSI	CCGG	2 cut(s)	39, 227
BslI	CCNNNNNNNGG	2 cut(s)	226, 233
BsmAI	GTCTC	1 cut(s)	68
BsmBI	CGTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	82, 103
Bsp143I	GATC	4 cut(s)	223, 265, 324, 386
BspACI	CCGC	1 cut(s)	31
BspPI	GGATC	3 cut(s)	218, 319, 394
BssECI	CCNNGG	2 cut(s)	157, 398
BssMI	GATC	4 cut(s)	223, 265, 324, 386
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	398
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	226, 268, 327, 389
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	4 cut(s)	223, 265, 324, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 107
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	37, 156
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	342
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	14, 131, 214, 230, 257
CviKI_1	RGCY	5 cut(s)	14, 131, 214, 230, 257
CviQI	GTAC	1 cut(s)	330
DpnI	GATC	4 cut(s)	225, 267, 326, 388
DpnII	GATC	4 cut(s)	223, 265, 324, 386
Eco130I	CCWWGG	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	156
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	48, 120, 144, 146, 168, 185, 280
FatI	CATG	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	209, 365, 399
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	108
HaeII	RGCGCY	1 cut(s)	45
HapII	CCGG	2 cut(s)	39, 227
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	240, 368
HpaII	CCGG	2 cut(s)	39, 227
Hpy188I	TCNGA	1 cut(s)	373
Hpy188III	TCNNGA	1 cut(s)	284
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	110, 278, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 107
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	4 cut(s)	223, 265, 324, 386
LmnI	GCTCC	1 cut(s)	400
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	3 cut(s)	209, 365, 399
MalI	GATC	4 cut(s)	225, 267, 326, 388
MboI	GATC	4 cut(s)	223, 265, 324, 386
MboII	GAAGA	2 cut(s)	19, 347
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	2 cut(s)	82, 103
MluCI	AATT	1 cut(s)	301
MnlI	CCTC	2 cut(s)	28, 372
MseI	TTAA	3 cut(s)	69, 177, 318
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	39, 227
MspR9I	CCNGG	2 cut(s)	39, 158
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	39, 107
NciI	CCSGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	144
NdeII	GATC	4 cut(s)	223, 265, 324, 386
NlaIII	CATG	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	240, 368
PkrI	GCNGC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	69, 177, 318
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	223, 265, 324, 386
ScrFI	CCNGG	2 cut(s)	39, 158
SduI	GDGCHC	2 cut(s)	82, 103
SetI	ASST	4 cut(s)	16, 93, 97, 404
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	3 cut(s)	209, 365, 399
StyD4I	CCNGG	2 cut(s)	37, 156
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	240, 368
Tru1I	TTAA	3 cut(s)	69, 177, 318
Tru9I	TTAA	3 cut(s)	69, 177, 318
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	107
TspGWI	ACGGA	3 cut(s)	10, 313, 317
TspRI	CASTG	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	318
XmaJI	CCTAGG	1 cut(s)	398
XspI	CTAG	3 cut(s)	209, 365, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.