Rh1DG046900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002855
Physical Location & Seq
Forward (+)
7552765 .. 7552959
195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG046900.1

Sequence Viewer

Length: 195 bp
ATGGAGGCTCCGGACTCGGAGGTTGAGATCTGGATTATCAGAGCTTTCTTCGATCCCGAGCCAGTCAATCTGAACGCCTCTCAATTCAACCGGATTCTGAACGGTGATGCTGTAAACGAATCGGAGACGGAGGAGGAGTTAGTCCTCTACACCACAGCTGCACTTGGCTCTCGATTCGCTCTAGCGGCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

7.08

Weight (kDa)

4.05

Isoelectric Point (pI)

57.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 10
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 47
AcyI GRCGYC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 88
AluBI AGCT 2 cut(s) 44, 158
AluI AGCT 2 cut(s) 44, 158
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 191
BglII AGATCT 1 cut(s) 27
BisI GCNGC 2 cut(s) 159, 186
BlsI GCNGC 2 cut(s) 160, 187
BmeT110I CYCGRG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 9, 189
BmsI GCATC 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 188
BsaWI WCCGGW 2 cut(s) 10, 90
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 10
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 2 cut(s) 146, 149
BseXI GCAGC 1 cut(s) 145
BsgI GTGCAG 1 cut(s) 144
BshNI GGYRCC 1 cut(s) 187
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 2 cut(s) 11, 91
BsmAI GTCTC 1 cut(s) 119
BsmBI CGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 56
Bsp13I TCCGGA 1 cut(s) 10
Bsp143I GATC 2 cut(s) 27, 52
BspACI CCGC 1 cut(s) 185
BspEI TCCGGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 9, 189
BspPI GGATC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 187
BsrI ACTGG 1 cut(s) 62
BssMI GATC 2 cut(s) 27, 52
BssNI GRCGYC 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 188
BstH2I RGCGCY 1 cut(s) 191
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 30, 55
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 2 cut(s) 27, 52
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
CfoI GCGC 1 cut(s) 190
CviJI RGCY 5 cut(s) 8, 44, 61, 158, 168
CviKI_1 RGCY 5 cut(s) 8, 44, 61, 158, 168
DinI GGCGCC 1 cut(s) 189
DpnI GATC 2 cut(s) 29, 54
DpnII GATC 2 cut(s) 27, 52
Eco88I CYCGRG 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 189
EheI GGCGCC 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 119
Fnu4HI GCNGC 2 cut(s) 159, 186
Fsp4HI GCNGC 2 cut(s) 159, 186
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 159, 186
HaeII RGCGCY 1 cut(s) 191
HapII CCGG 2 cut(s) 11, 91
HhaI GCGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 4 cut(s) 14, 94, 119, 174
HpaII CCGG 2 cut(s) 11, 91
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 5 cut(s) 19, 41, 72, 99, 124
Hpy188III TCNNGA 4 cut(s) 11, 31, 56, 171
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
Hsp92I GRCGYC 1 cut(s) 188
HspAI GCGC 1 cut(s) 188
KasI GGCGCC 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 10
Kzo9I GATC 2 cut(s) 27, 52
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 16, 24, 75, 104
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 182
MalI GATC 2 cut(s) 29, 54
MboI GATC 2 cut(s) 27, 52
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 27
MluCI AATT 1 cut(s) 83
Mly113I GGCGCC 1 cut(s) 188
MlyI GAGTC 1 cut(s) 8
MnlI CCTC 5 cut(s) 13, 88, 124, 127, 155
MroI TCCGGA 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 11, 91
MwoI GCNNNNNNNGC 1 cut(s) 185
NarI GGCGCC 1 cut(s) 188
NdeII GATC 2 cut(s) 27, 52
NlaIV GGNNCC 2 cut(s) 9, 189
PfeI GAWTC 3 cut(s) 94, 119, 174
PkrI GCNGC 2 cut(s) 160, 187
PleI GAGTC 1 cut(s) 8
PluTI GGCGCC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 9, 189
PsuI RGATCY 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 158
SatI GCNGC 2 cut(s) 159, 186
Sau3AI GATC 2 cut(s) 27, 52
SchI GAGTC 1 cut(s) 8
SetI ASST 3 cut(s) 24, 46, 160
SfaNI GCATC 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 189
SgeI CNNG 9 cut(s) 23, 28, 43, 68, 70, 74, 103, 176, 183
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 187
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 51, 172
TasI AATT 1 cut(s) 83
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 3 cut(s) 94, 119, 174
TseI GCWGC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 143
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.