isoform X1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g21580 FvH4_7g07740 FvH4_7g07740 |
| malus_domestica | MD07G1080500.v1.1 |
| prunus_persica | Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1 |
| pyrus_communis | pycom07g06410 |
| rosa_chinensis | RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121 |
| rosa_laevigata | RLG00000029151 |
| rosa_multiflora | Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00312940 Rroxscaffold_4G00326270 |
| rosa_rugosa | Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500 |
| rosa_samantha | Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100 |
| rosa_wichuraiana | Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 24 |
| AclWI | GGATC | 2 cut(s) | 14, 190 |
| AcsI | RAATTY | 1 cut(s) | 35 |
| AfaI | GTAC | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 29 |
| AgsI | TTSAA | 1 cut(s) | 40 |
| AlwI | GGATC | 2 cut(s) | 14, 190 |
| ApoI | RAATTY | 1 cut(s) | 35 |
| AseI | ATTAAT | 1 cut(s) | 114 |
| AspA2I | CCTAGG | 1 cut(s) | 194 |
| AvrII | CCTAGG | 1 cut(s) | 194 |
| BfaI | CTAG | 4 cut(s) | 5, 80, 161, 195 |
| BfmI | CTRYAG | 1 cut(s) | 27 |
| BglII | AGATCT | 1 cut(s) | 61 |
| BlnI | CCTAGG | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 29 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 29 |
| Bsp143I | GATC | 3 cut(s) | 19, 61, 182 |
| BspACI | CCGC | 1 cut(s) | 24 |
| BspPI | GGATC | 2 cut(s) | 14, 190 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssMI | GATC | 3 cut(s) | 19, 61, 182 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| BstKTI | GATC | 3 cut(s) | 22, 64, 185 |
| BstMBI | GATC | 3 cut(s) | 19, 61, 182 |
| BstSFI | CTRYAG | 1 cut(s) | 27 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BtsI | GCAGTG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| Csp6I | GTAC | 1 cut(s) | 126 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviJI | RGCY | 2 cut(s) | 10, 53 |
| CviKI_1 | RGCY | 2 cut(s) | 10, 53 |
| CviQI | GTAC | 1 cut(s) | 126 |
| DpnI | GATC | 3 cut(s) | 21, 63, 184 |
| DpnII | GATC | 3 cut(s) | 19, 61, 182 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 3 cut(s) | 76, 138, 180 |
| FatI | CATG | 1 cut(s) | 178 |
| FauI | CCCGC | 1 cut(s) | 31 |
| FspBI | CTAG | 4 cut(s) | 5, 80, 161, 195 |
| Hin1II | CATG | 1 cut(s) | 182 |
| HinfI | GANTC | 2 cut(s) | 121, 164 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy188III | TCNNGA | 1 cut(s) | 80 |
| HpyAV | CCTTC | 1 cut(s) | 165 |
| HpyCH4V | TGCA | 2 cut(s) | 74, 136 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| Kzo9I | GATC | 3 cut(s) | 19, 61, 182 |
| LmnI | GCTCC | 1 cut(s) | 196 |
| LpnPI | CCDG | 2 cut(s) | 74, 156 |
| MaeI | CTAG | 4 cut(s) | 5, 80, 161, 195 |
| MalI | GATC | 3 cut(s) | 21, 63, 184 |
| MboI | GATC | 3 cut(s) | 19, 61, 182 |
| MboII | GAAGA | 1 cut(s) | 143 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MluCI | AATT | 2 cut(s) | 35, 97 |
| MnlI | CCTC | 1 cut(s) | 168 |
| MseI | TTAA | 1 cut(s) | 114 |
| MspA1I | CMGCKG | 1 cut(s) | 26 |
| NdeII | GATC | 3 cut(s) | 19, 61, 182 |
| NlaIII | CATG | 1 cut(s) | 182 |
| PfeI | GAWTC | 2 cut(s) | 121, 164 |
| PshBI | ATTAAT | 1 cut(s) | 114 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| RsaI | GTAC | 1 cut(s) | 127 |
| RsaNI | GTAC | 1 cut(s) | 126 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| Sau3AI | GATC | 3 cut(s) | 19, 61, 182 |
| SetI | ASST | 1 cut(s) | 200 |
| SfcI | CTRYAG | 1 cut(s) | 27 |
| Sse9I | AATT | 2 cut(s) | 35, 97 |
| SsiI | CCGC | 1 cut(s) | 24 |
| SspMI | CTAG | 4 cut(s) | 5, 80, 161, 195 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TasI | AATT | 2 cut(s) | 35, 97 |
| TfiI | GAWTC | 2 cut(s) | 121, 164 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TspGWI | ACGGA | 1 cut(s) | 109 |
| TspRI | CASTG | 1 cut(s) | 138 |
| VspI | ATTAAT | 1 cut(s) | 114 |
| XapI | RAATTY | 1 cut(s) | 35 |
| XbaI | TCTAGA | 1 cut(s) | 79 |
| XmaJI | CCTAGG | 1 cut(s) | 194 |
| XspI | CTAG | 4 cut(s) | 5, 80, 161, 195 |