Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

58297399 .. 58309673

Gene Structure 12275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCGCCTACGGGTTGGACGTCAAAGGGACGAAGGCCTAAAACCCTCCTCGAAGCCTCTCGATCACGCAATGTTTCGAGTAAAAGAGAGTCCAAGGGCGCGTTGTTGAAACTGCAGAGTCTTCTCCCCGAGCTCGGAATCGGAAAGCTTAGATACCGAGCTTCCAAGTCGTTGATCGAGACGCGGTATGAGTGTCTCTTGCTGTGGCCACTGCTCCCTCTGACCGACACACCAACTACAGCAATCAAACAAAGAAAACGGATGGAAAGAAAAAAGGAGGAAGAAAAGAAGAAAAAGGTCCGAAATGATGAGAGGTGTTCGGCTTCATCAATGAGGATGGAATCAACCTCATCAATTACACAAGTAATTGAAATTCCTCAAGGCAAGCTCCTCAACACTCGTGGCCAGATTATCTCTCAGAAATCAAGACCAAGCTCACTCGTTTGTGACGAACTTAAACACAGGATACTGTTTCTTTTAGAGATGCTAGAGCCATTCCTTGATCTCGCTGTAGGCAGATTCAAGGGTAAAATAGCCTTTGGAGATCTATCTTGTGCATATCCAGAAACGCAGGAACGGAATTGTGCTATTGCTATTAATGTGATCCGTACAGCAGTTCTTCCTTCACTAGAATCTGAATGGAGGTGTGGATCAGTTGCTCCTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

222

Amino Acids

25.17

Weight (kDa)

9.99

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
AccII	CGCG	2 cut(s)	101, 184
AciI	CCGC	2 cut(s)	5, 184
AclWI	GGATC	2 cut(s)	598, 658
AcoI	YGGCCR	2 cut(s)	206, 403
AcsI	RAATTY	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	2 cut(s)	11, 134
AgsI	TTSAA	3 cut(s)	109, 371, 523
AluBI	AGCT	5 cut(s)	133, 148, 161, 388, 435
AluI	AGCT	5 cut(s)	133, 148, 161, 388, 435
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	173, 200
AlwI	GGATC	2 cut(s)	598, 658
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	35, 206, 403
ApoI	RAATTY	1 cut(s)	372
AseI	ATTAAT	1 cut(s)	597
AspA2I	CCTAGG	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	662
BalI	TGGCCA	2 cut(s)	208, 405
BanII	GRGCYC	1 cut(s)	135
BauI	CACGAG	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	256, 331
BciVI	GTATCC	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	173, 200
BfaI	CTAG	3 cut(s)	488, 629, 663
BfmI	CTRYAG	3 cut(s)	113, 237, 510
BfuI	GTATCC	1 cut(s)	459
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	1 cut(s)	5
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	93, 662
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 134
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	93, 662
BseGI	GGATG	2 cut(s)	267, 342
BseLI	CCNNNNNNNGG	2 cut(s)	11, 134
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	38, 380
Bsh1236I	CGCG	2 cut(s)	101, 184
BshFI	GGCC	3 cut(s)	37, 208, 405
BsiHKAI	GWGCWC	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	11, 134
BsmAI	GTCTC	2 cut(s)	173, 200
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	37, 208, 405
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
BspACI	CCGC	2 cut(s)	5, 184
BspANI	GGCC	3 cut(s)	37, 208, 405
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	2 cut(s)	101, 184
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	2 cut(s)	598, 658
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	93, 662
BssMI	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
BssNI	GRCGYC	1 cut(s)	20
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	93, 662
Bst2BI	CACGAG	1 cut(s)	399
Bst4CI	ACNGT	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	149, 417
BstF5I	GGATG	2 cut(s)	267, 342
BstFNI	CGCG	2 cut(s)	101, 184
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	6 cut(s)	65, 177, 505, 547, 606, 653
BstMAI	GTCTC	2 cut(s)	173, 200
BstMBI	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
BstSFI	CTRYAG	3 cut(s)	113, 237, 510
BstUI	CGCG	2 cut(s)	101, 184
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	37, 208, 405
BtsCI	GGATG	2 cut(s)	267, 342
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	209
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	1 cut(s)	609
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	2 cut(s)	149, 417
DpnI	GATC	6 cut(s)	64, 176, 504, 546, 605, 652
DpnII	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
EaeI	YGGCCR	2 cut(s)	206, 403
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	93, 662
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	93, 662
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	93, 662
Esp3I	CGTCTC	1 cut(s)	173
FaiI	YATR	2 cut(s)	189, 559
FaqI	GGGAC	1 cut(s)	42
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	274, 349
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	488, 629, 663
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	37, 208, 405
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	6 cut(s)	89, 118, 138, 341, 519, 632
Hpy188I	TCNGA	6 cut(s)	137, 143, 222, 302, 420, 637
Hpy188III	TCNNGA	4 cut(s)	60, 178, 426, 563
HpyAV	CCTTC	2 cut(s)	27, 633
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	115, 557
HpyF3I	CTNAG	2 cut(s)	149, 417
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
LmnI	GCTCC	3 cut(s)	219, 393, 664
LpnPI	CCDG	4 cut(s)	419, 448, 557, 576
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	488, 629, 663
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	446
MalI	GATC	6 cut(s)	64, 176, 504, 546, 605, 652
MboI	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
MboII	GAAGA	4 cut(s)	113, 293, 301, 611
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	2 cut(s)	208, 405
MluCI	AATT	4 cut(s)	354, 366, 372, 580
MluNI	TGGCCA	2 cut(s)	208, 405
MlyI	GAGTC	2 cut(s)	98, 127
Mox20I	TGGCCA	2 cut(s)	208, 405
MscI	TGGCCA	2 cut(s)	208, 405
MseI	TTAA	2 cut(s)	456, 597
Msp20I	TGGCCA	2 cut(s)	208, 405
MvnI	CGCG	2 cut(s)	101, 184
NdeII	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
NmuCI	GTSAC	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 447
PfeI	GAWTC	4 cut(s)	138, 341, 519, 632
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	97, 126
PpsI	GAGTC	2 cut(s)	97, 126
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	456, 597
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	6 cut(s)	62, 174, 502, 544, 603, 650
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	98, 127
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	3 cut(s)	113, 237, 510
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
Sse9I	AATT	4 cut(s)	354, 366, 372, 580
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	5, 184
SspMI	CTAG	3 cut(s)	488, 629, 663
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	93, 662
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	4 cut(s)	51, 61, 77, 177
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	4 cut(s)	354, 366, 372, 580
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	138, 341, 519, 632
Tru1I	TTAA	2 cut(s)	456, 597
Tru9I	TTAA	2 cut(s)	456, 597
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	1 cut(s)	315
TspGWI	ACGGA	3 cut(s)	274, 592, 596
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	372
XmaJI	CCTAGG	1 cut(s)	662
XspI	CTAG	3 cut(s)	488, 629, 663
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.