Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002855

Physical Location & Seq

Genomic Coordinates Reverse (-)

15653206 .. 15657073

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G100700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATATAGAGTTTGAGGCGAGGGTGAAACCTCTGGAATACAAAGTGAAGGCAATGTCACGTGAGTCGCCGTCCCAGAAGGCGGGTCACGTGCTGGACGCCGACCTCCGCTCCCACTGGTCCACCGCTACCAACACCAAGGAGTGGATTCTTCTCGAGCTCAACGAACCTTGCTTGTTATCGCACATACGAATTTACAACAAGTCTGTGCTCGAATGGGAAATTTCAGTTGGCTTACGCTACAAGCCAGAGACATTTGTAAAAGTTCGCCCATGTTGTGAAGCACCGCGACGCGACATGATCTATCCCATGAACTATACTCCCTGTCACTACGTGCGAATATCTTGTTTGAGGGGAAATCCCATAGCTATTTTCTTCATACAGCTTATCGGGGTTTCAGTGACGGGCCTGGAACCAGAGTTTCAACCAGTTGTTAACCACTTGTTGCCATCCATTATATCTCACAAACAAGATGCCCTTGATTTGCATCTTCAGTTGCTTAAAGACATGACAAGTTGGTTGCTTGTGTTCCTTCCCCAACTTGAGTGCAGGCAGACCTTAACAGCTTCTTGGATGCTGCTGAACCTAATTTACGTTTTCTTGCTATGCTTGCCGGTCCTTTTTATCCCATACAATCTTGGGAATGAAAGGACAGCTGCAAAGTCTTTAGGCAATATCTCAGACTCTGAACCACGAAGATCACACGGCACTTCACCTTTCATCCTGTCAACATCCAGTTCTATAGTATTCTGTGCAGATGCAATTTTTGTGCTGTTGAGAAAGGCATATAAAGATTCTGATTTAGGAATTGTTTGCAGAATGGCTGCTAGAGTTCTACATAAGCTTATAGAGCCTGTGGCACATGAAGTATCAACACCTCCTGGTGAAGTGACATATGGAGATGAAGCAGTAAAATCAGAAATAATTAATCCGGCTCCTTTAGTTGATTACTCGAACTCGTTTGGAGAAGAGTTCCAGTTGCCTGATGATCACTGGGCTCAAGCTATCTTAGCATCTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

38.68

Weight (kDa)

6.01

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002855)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21580 FvH4_7g07740 FvH4_7g07740
malus_domestica	MD07G1080500.v1.1
prunus_persica	Prupe.2G100700_v2.0.a1 Prupe.2G105000_v2.0.a1 Prupe.2G105000_v2.0.a1
pyrus_communis	pycom07g06410
rosa_chinensis	RchiOBHm_Chr1g0342311 RchiOBHm_Chr4g0407941 RchiOBHm_Chr4g0408121
rosa_laevigata	RLG00000029151
rosa_multiflora	Rmu_co7996888.1_g000001 Rmu_sc0005445.1_g000004
rosa_roxburghii	Rroxscaffold_4G00312940 Rroxscaffold_4G00326270
rosa_rugosa	Rorug01G0151700.1 Rorug03G0066000 Rorug03G0328400 Rorug03G0328500
rosa_samantha	Rh1AG166500 Rh1AG423200 Rh1BG132700 Rh1BG133500 Rh1CG154900 Rh1DG046900 Rh1DG167600 Rh1DG168100 Rh2BG305600 Rh3DG269000 Rh4AG147400 Rh4DG172400 Rh4DG255300 Rh7DG304100
rosa_wichuraiana	Rw0G011470 Rw1G013890 Rw3G021620 Rw4G011750 Rw4G022060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccBSI	CCGCTC	1 cut(s)	111
AccII	CGCG	2 cut(s)	289, 294
AciI	CCGC	4 cut(s)	83, 109, 126, 287
AcsI	RAATTY	2 cut(s)	192, 222
AcuI	CTGAAG	1 cut(s)	476
AcvI	CACGTG	2 cut(s)	62, 91
AcyI	GRCGYC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	82, 144
AgsI	TTSAA	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	408, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	7 cut(s)	160, 368, 385, 566, 656, 844, 1004
AluI	AGCT	7 cut(s)	160, 368, 385, 566, 656, 844, 1004
Alw21I	GWGCWC	2 cut(s)	162, 213
Alw26I	GTCTC	1 cut(s)	245
AlwNI	CAGNNNCTG	1 cut(s)	686
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	3 cut(s)	577, 656, 824
ApoI	RAATTY	2 cut(s)	192, 222
AseI	ATTAAT	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	120, 406, 616
AsuHPI	GGTGA	3 cut(s)	37, 705, 896
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	120, 616
BanII	GRGCYC	2 cut(s)	162, 1000
BbrPI	CACGTG	2 cut(s)	62, 91
Bbv12I	GWGCWC	2 cut(s)	162, 213
BbvI	GCAGC	3 cut(s)	564, 643, 811
BccI	CCATC	1 cut(s)	457
BceAI	ACGGC	2 cut(s)	55, 721
BciT130I	CCWGG	2 cut(s)	410, 882
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	828
BfmI	CTRYAG	1 cut(s)	741
BisI	GCNGC	3 cut(s)	578, 657, 825
BlsI	GCNGC	3 cut(s)	579, 658, 826
Bme1390I	CCNGG	2 cut(s)	410, 882
Bme18I	GGWCC	2 cut(s)	120, 616
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	120, 406, 616
BmiI	GGNNCC	2 cut(s)	414, 936
BmrFI	CCNGG	2 cut(s)	410, 882
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	5 cut(s)	463, 496, 564, 748, 1022
BmuI	ACTGGG	1 cut(s)	1003
BpuEI	CTTGAG	2 cut(s)	563, 984
BsaAI	YACGTR	3 cut(s)	62, 91, 334
BsaBI	GATNNNNATC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 144
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	5 cut(s)	122, 428, 735, 976, 998
Bse3DI	GCAATG	1 cut(s)	60
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	410, 882
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	4 cut(s)	449, 579, 720, 731
BseJI	GATNNNNATC	1 cut(s)	486
BseLI	CCNNNNNNNGG	2 cut(s)	82, 144
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	5 cut(s)	122, 428, 735, 976, 998
BseXI	GCAGC	3 cut(s)	564, 643, 811
BsgI	GTGCAG	2 cut(s)	568, 774
Bsh1236I	CGCG	2 cut(s)	289, 294
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	162, 213
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	614, 932
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	82, 144
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	162, 213, 1000
Bsp143I	GATC	3 cut(s)	300, 698, 988
BspACI	CCGC	4 cut(s)	83, 109, 126, 287
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	692
BspFNI	CGCG	2 cut(s)	289, 294
BspLI	GGNNCC	2 cut(s)	414, 936
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	613
BsrI	ACTGG	5 cut(s)	122, 428, 735, 976, 998
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	3 cut(s)	300, 698, 988
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	410, 882
Bst6I	CTCTTC	1 cut(s)	963
BstACI	GRCGYC	1 cut(s)	99
BstBAI	YACGTR	3 cut(s)	62, 91, 334
BstC8I	GCNNGC	2 cut(s)	551, 611
BstDEI	CTNAG	2 cut(s)	679, 1009
BstF5I	GGATG	4 cut(s)	449, 579, 720, 731
BstFNI	CGCG	2 cut(s)	289, 294
BstKTI	GATC	3 cut(s)	303, 701, 991
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	300, 698, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	610, 850, 1010
BstNI	CCWGG	2 cut(s)	410, 882
BstSCI	CCNGG	2 cut(s)	408, 880
BstSFI	CTRYAG	1 cut(s)	741
BstUI	CGCG	2 cut(s)	289, 294
BstV1I	GCAGC	3 cut(s)	564, 643, 811
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	4 cut(s)	449, 579, 720, 731
BtsIMutI	CAGTG	3 cut(s)	115, 405, 991
Cac8I	GCNNGC	2 cut(s)	551, 611
CaiI	CAGNNNCTG	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	3 cut(s)	120, 406, 616
CseI	GACGC	2 cut(s)	107, 300
CviAII	CATG	5 cut(s)	273, 298, 310, 508, 863
DdeI	CTNAG	2 cut(s)	679, 1009
DpnI	GATC	3 cut(s)	302, 700, 990
DpnII	GATC	3 cut(s)	300, 698, 988
DraIII	CACNNNGTG	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	963
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	2 cut(s)	162, 1000
Eco47I	GGWCC	2 cut(s)	120, 616
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	476
Eco72I	CACGTG	2 cut(s)	62, 91
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	408, 880
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	2 cut(s)	162, 1000
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	276, 301, 313, 511, 866
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	5 cut(s)	272, 297, 309, 507, 862
FauI	CCCGC	1 cut(s)	76
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	578, 657, 825
FokI	GGATG	4 cut(s)	436, 586, 707, 718
FriOI	GRGCYC	2 cut(s)	162, 1000
Fsp4HI	GCNGC	3 cut(s)	578, 657, 825
FspBI	CTAG	1 cut(s)	828
GluI	GCNGC	3 cut(s)	578, 657, 825
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	614, 932
HgaI	GACGC	2 cut(s)	107, 300
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	276, 301, 313, 511, 866
HincII	GTYRAC	2 cut(s)	436, 729
HindII	GTYRAC	2 cut(s)	436, 729
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	4 cut(s)	65, 148, 683, 794
HpaI	GTTAAC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	614, 932
HphI	GGTGA	3 cut(s)	37, 705, 896
Hpy166II	GTNNAC	3 cut(s)	123, 436, 729
Hpy188I	TCNGA	4 cut(s)	682, 688, 799, 919
Hpy188III	TCNNGA	2 cut(s)	35, 155
Hpy8I	GTNNAC	3 cut(s)	123, 436, 729
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	43, 73, 542
HpyCH4IV	ACGT	4 cut(s)	61, 90, 333, 594
HpyCH4V	TGCA	6 cut(s)	487, 549, 659, 755, 761, 816
HpyF10VI	GCNNNNNNNGC	3 cut(s)	610, 850, 1010
HpyF3I	CTNAG	2 cut(s)	679, 1009
HpySE526I	ACGT	4 cut(s)	61, 90, 333, 594
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	276, 301, 313, 511, 866
Ksp22I	TGATCA	1 cut(s)	988
KspAI	GTTAAC	1 cut(s)	436
Kzo9I	GATC	3 cut(s)	300, 698, 988
LmnI	GCTCC	2 cut(s)	116, 940
Lsp1109I	GCAGC	3 cut(s)	564, 643, 811
LweI	GCATC	5 cut(s)	463, 496, 564, 748, 1022
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	4 cut(s)	61, 90, 333, 594
MaeIII	GTNAC	5 cut(s)	57, 86, 326, 400, 889
MalI	GATC	3 cut(s)	302, 700, 990
MbiI	CCGCTC	1 cut(s)	111
MboI	GATC	3 cut(s)	300, 698, 988
MboII	GAAGA	5 cut(s)	143, 367, 482, 708, 980
MhlI	GDGCHC	3 cut(s)	162, 213, 1000
MluCI	AATT	6 cut(s)	192, 222, 588, 762, 807, 924
MlyI	GAGTC	2 cut(s)	74, 677
MnlI	CCTC	6 cut(s)	10, 15, 42, 116, 345, 888
MseI	TTAA	4 cut(s)	435, 501, 560, 927
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	2 cut(s)	614, 932
MspR9I	CCNGG	2 cut(s)	410, 882
MvaI	CCWGG	2 cut(s)	410, 882
MvnI	CGCG	2 cut(s)	289, 294
MwoI	GCNNNNNNNGC	3 cut(s)	610, 850, 1010
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	3 cut(s)	300, 698, 988
NlaIII	CATG	5 cut(s)	276, 301, 313, 511, 866
NlaIV	GGNNCC	2 cut(s)	414, 936
NmuCI	GTSAC	5 cut(s)	57, 86, 326, 400, 889
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	148, 794
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	3 cut(s)	579, 658, 826
PleI	GAGTC	2 cut(s)	73, 677
PmaCI	CACGTG	2 cut(s)	62, 91
PmlI	CACGTG	2 cut(s)	62, 91
PpsI	GAGTC	2 cut(s)	73, 677
Ppu21I	YACGTR	3 cut(s)	62, 91, 334
PshBI	ATTAAT	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	408, 880
PspCI	CACGTG	2 cut(s)	62, 91
PspGI	CCWGG	2 cut(s)	408, 880
PspN4I	GGNNCC	2 cut(s)	414, 936
PspPI	GGNCC	3 cut(s)	120, 406, 616
PsrI	GAACNNNNNNTAC	2 cut(s)	575, 607
PstNI	CAGNNNCTG	1 cut(s)	686
PvuII	CAGCTG	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	435, 501, 560, 927
SatI	GCNGC	3 cut(s)	578, 657, 825
Sau3AI	GATC	3 cut(s)	300, 698, 988
Sau96I	GGNCC	3 cut(s)	120, 406, 616
SchI	GAGTC	2 cut(s)	74, 677
ScrFI	CCNGG	2 cut(s)	410, 882
SduI	GDGCHC	3 cut(s)	162, 213, 1000
SfaNI	GCATC	5 cut(s)	463, 496, 564, 748, 1022
SfcI	CTRYAG	1 cut(s)	741
Sfr274I	CTCGAG	1 cut(s)	155
SinI	GGWCC	2 cut(s)	120, 616
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	3 cut(s)	155, 542, 999
SmoI	CTYRAG	3 cut(s)	155, 542, 999
Sse9I	AATT	6 cut(s)	192, 222, 588, 762, 807, 924
SsiI	CCGC	4 cut(s)	83, 109, 126, 287
SspMI	CTAG	1 cut(s)	828
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	408, 880
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	4 cut(s)	64, 93, 336, 597
TaqI	TCGA	3 cut(s)	156, 213, 953
TasI	AATT	6 cut(s)	192, 222, 588, 762, 807, 924
TfiI	GAWTC	2 cut(s)	148, 794
Tru1I	TTAA	4 cut(s)	435, 501, 560, 927
Tru9I	TTAA	4 cut(s)	435, 501, 560, 927
TscAI	CASTG	3 cut(s)	122, 405, 998
TseFI	GTSAC	5 cut(s)	57, 86, 326, 400, 889
TseI	GCWGC	3 cut(s)	577, 656, 824
Tsp45I	GTSAC	5 cut(s)	57, 86, 326, 400, 889
TspDTI	ATGAA	6 cut(s)	326, 367, 660, 709, 879, 918
TspRI	CASTG	3 cut(s)	122, 405, 998
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	2 cut(s)	120, 616
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	192, 222
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.