FvH4_1g24970

Amino-acid permease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
16761693 .. 16766728
5036 bp
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UTR
Exon/CDS
Intron
FvH4_1g24970.t1

Sequence Viewer

Length: 1581 bp
ATGGGACAGAACCAAGTAGATGCATCACAAATGCAAGGGATGGATTCAGGGGAAAAACGACTTAATGAGCTTGGTTACAAGCAAGAACTCAGAAGAGAAATGACGTTGTTCAAAACTCTTGCAATATCATTCTCGACGATGACACTTTTCACCGGAATCACTCCTTTGTATGGTTCAAGCCTTGCATATGGAGGTCCTGCAACCCTTGTGTGGGGTTGGGTGGTAGTATCATTTTTCACCTGGTTTGTAGGACTTGCAATGGCAGAGATCTGTTCATCTTTCCCAACTACAGGATCTCTTTACTTCTGGGCTGCTCACTTAGCTGGTCCCAAATGGGGTCCTCTTGCATCATGGTGTTGTGCTTGGCTTGAGACCATAGGGCTCATTGCCGGCATAGGTACTCAGGCATATGCAGGATCTCAAACACTACAAAGTATCATATTACTATCCACCGGGACAAATAAAGGTGGAGGGTATTTTGCACCAAAGTGGTTATTCTTATGCATGTACATTGGCCTCACTCTTATATGGGCCTTTCTCAACACATTTGCGTTAGAAGTGATTGCCTTCATTGATATAATATCGATATGGTGGCAGGTCGTTGGAGGGACAATTATTGTTATATTGCTTCCCCTTGTAGCACTTACAACACAGTCTGCGTCATACGTGTTCACAAACTTCGATGTGGCCCCTGAGCTGACAGGAATATCAAGCAAGCCTTATGCAGTGATTCTATCCTTTCTTGTTAGTCAGTATTCATTATATGGATATGATGCTGCAGCACATCTAACTGAGGAAACCAGAGGAGCAGACAAGAATGGTCCTATTGCTATTCTAACAAGCATCGGTATCATTTCAGTGTTTGGATGGGCATACATCTTGGCCCTCACTTTCAGCATTCAGGATTTTAGCTACCTGTATGATCCCACCAATGAGACTGCAGGAGCATTTGTGCCTGCTCAAATTCTCTATGATGCATTTCATGGGAGGTATCACAGTTCCACTGGAGCCATCATTTTACTATGCATCATTTGGGGTTCATTCTTCTTTGGTGGACTTTCAATTACCACTAGTGCTGCGAGAGTGGTGTATGCTCTATCAAGAGACCAAGGGGTTCCATTCTCTTCCGTATGGCGAAAAATACACCCAAAACACAAAGTTCCTTCCAATGCTGTGTGGCTCTGTGCAGCCATCTGCATTCTCCTTGGACTTCCAATCTTAAAAGTCAATGTAGTCTTTGTTGCCATAACTTCCATATGTACGATTGGATGGGTAGGAGGTTATGCAGTTCCGATCTTTGCAAGAATGGTAATGCCTGAGAAGAACTTCAAAGCCGGGCCATTTTATTTGGGCAGTTTCAGCAGACCAATATGCTTGGTCGCCTTCCTGTGGATTTGTTACACTTGTTCTGTCTTCCTCCTCCCCACTTTCTACCCAATTTCCTGGAATACATTCAATTATGCACCTGTTGCTTTGAGTGTGGGTTTAGGTCTGATAATGCTTTGGTGGGTGTTAAGTGCAAGGAAGTGGTTCAAAGGACCTGTTAGAAACATCGAAACTGATCATAGTGGAAAGGTTTGA

Protein Analysis

527

Amino Acids

57.75

Weight (kDa)

8.52

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 35 - 491 1.3e-52 Amino acid permease
AA_permease PF00324 57 - 505 2.9e-18 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 586
AclWI GGATC 3 cut(s) 301, 424, 917
AcsI RAATTY 1 cut(s) 963
AfaI GTAC 3 cut(s) 400, 509, 1261
AfiI CCNNNNNNNGG 6 cut(s) 170, 210, 211, 290, 335, 1389
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 6 cut(s) 112, 177, 1062, 1330, 1456, 1534
AhlI ACTAGT 1 cut(s) 1070
AjnI CCWGG 2 cut(s) 239, 1442
AleI CACNNNNGTG 1 cut(s) 487
AluBI AGCT 4 cut(s) 70, 323, 697, 912
AluI AGCT 4 cut(s) 70, 323, 697, 912
Alw26I GTCTC 3 cut(s) 365, 929, 1098
AlwI GGATC 3 cut(s) 301, 424, 917
AoxI GGCC 5 cut(s) 514, 531, 687, 882, 1337
ApeKI GCWGC 5 cut(s) 311, 776, 779, 1076, 1187
ApoI RAATTY 1 cut(s) 963
Asp700I GAANNNNTTC 3 cut(s) 1325, 1451, 1529
AspS9I GGNCC 9 cut(s) 194, 326, 338, 531, 688, 821, 883, 1337, 1538
AsuC2I CCSGG 2 cut(s) 454, 1336
AsuHPI GGTGA 2 cut(s) 142, 229
AvaII GGWCC 5 cut(s) 194, 326, 338, 821, 1538
BanII GRGCYC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 1405
BbvI GCAGC 5 cut(s) 298, 763, 791, 1063, 1199
BccI CCATC 5 cut(s) 34, 861, 1019, 1199, 1263
BciT130I CCWGG 2 cut(s) 241, 1444
BclI TGATCA 1 cut(s) 1561
BcnI CCSGG 2 cut(s) 454, 1336
BcoDI GTCTC 3 cut(s) 365, 929, 1098
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 1 cut(s) 1071
BfmI CTRYAG 3 cut(s) 288, 777, 939
BfuAI ACCTGC 1 cut(s) 586
BglII AGATCT 1 cut(s) 267
BisI GCNGC 5 cut(s) 312, 777, 780, 1077, 1188
BlsI GCNGC 5 cut(s) 313, 778, 781, 1078, 1189
Bme1390I CCNGG 4 cut(s) 241, 454, 1336, 1444
Bme18I GGWCC 5 cut(s) 194, 326, 338, 821, 1538
BmgT120I GGNCC 9 cut(s) 194, 326, 338, 531, 688, 821, 883, 1337, 1538
BmiI GGNNCC 5 cut(s) 328, 339, 690, 1009, 1116
BmrFI CCNGG 4 cut(s) 241, 454, 1336, 1444
BmsI GCATC 7 cut(s) 10, 32, 356, 763, 852, 964, 1035
BpiI GAAGAC 1 cut(s) 1405
BpmI CTGGAG 1 cut(s) 1026
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 2 cut(s) 454, 1336
Bsa29I ATCGAT 1 cut(s) 584
BsaAI YACGTR 1 cut(s) 667
BsaI GGTCTC 2 cut(s) 365, 1098
BsaJI CCNNGG 2 cut(s) 1108, 1204
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 936, 966
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 210, 211, 290, 335, 1389
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 1009
Bse3DI GCAATG 2 cut(s) 264, 384
BseBI CCWGG 2 cut(s) 241, 1444
BseCI ATCGAT 1 cut(s) 584
BseDI CCNNGG 2 cut(s) 1108, 1204
BseGI GGATG 3 cut(s) 45, 872, 1274
BseLI CCNNNNNNNGG 6 cut(s) 170, 210, 211, 290, 335, 1389
BseMI GCAATG 2 cut(s) 264, 384
BseMII CTCAG 5 cut(s) 103, 416, 684, 783, 1308
BseNI ACTGG 1 cut(s) 1009
BseRI GAGGAG 2 cut(s) 819, 1409
BseXI GCAGC 5 cut(s) 298, 763, 791, 1063, 1199
BsgI GTGCAG 1 cut(s) 1206
BshFI GGCC 5 cut(s) 516, 533, 689, 884, 1339
BshVI ATCGAT 1 cut(s) 584
BsiSI CCGG 4 cut(s) 153, 390, 453, 1335
BslFI GGGAC 4 cut(s) 18, 312, 469, 622
BslI CCNNNNNNNGG 6 cut(s) 170, 210, 211, 290, 335, 1389
BsmAI GTCTC 3 cut(s) 365, 929, 1098
BsmFI GGGAC 4 cut(s) 18, 312, 469, 622
BsmI GAATGC 2 cut(s) 897, 1197
BsnI GGCC 5 cut(s) 516, 533, 689, 884, 1339
Bso31I GGTCTC 2 cut(s) 365, 1098
Bsp1286I GDGCHC 1 cut(s) 384
Bsp1407I TGTACA 1 cut(s) 507
Bsp143I GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
BspANI GGCC 5 cut(s) 516, 533, 689, 884, 1339
BspCNI CTCAG 5 cut(s) 102, 415, 685, 784, 1309
BspDI ATCGAT 1 cut(s) 584
BspLI GGNNCC 5 cut(s) 328, 339, 690, 1009, 1116
BspMAI CTGCAG 2 cut(s) 781, 943
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 3 cut(s) 301, 424, 917
BspTNI GGTCTC 2 cut(s) 365, 1098
BsrDI GCAATG 2 cut(s) 264, 384
BsrFI RCCGGY 1 cut(s) 389
BsrGI TGTACA 1 cut(s) 507
BsrI ACTGG 1 cut(s) 1009
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 1108, 1204
BssMI GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
BssT1I CCWWGG 2 cut(s) 1108, 1204
Bst2UI CCWGG 2 cut(s) 241, 1444
Bst4CI ACNGT 2 cut(s) 654, 998
Bst6I CTCTTC 2 cut(s) 88, 1129
BstAPI GCANNNNNTGC 1 cut(s) 1469
BstAUI TGTACA 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 3 cut(s) 391, 716, 957
BstDEI CTNAG 6 cut(s) 89, 319, 402, 693, 792, 1317
BstF5I GGATG 3 cut(s) 45, 872, 1274
BstKTI GATC 6 cut(s) 270, 296, 419, 925, 1296, 1564
BstMAI GTCTC 3 cut(s) 365, 929, 1098
BstMBI GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
BstMWI GCNNNNNNNGC 3 cut(s) 320, 1359, 1469
BstNI CCWGG 2 cut(s) 241, 1444
BstNSI RCATGY 1 cut(s) 508
BstSCI CCNGG 4 cut(s) 239, 452, 1334, 1442
BstSFI CTRYAG 3 cut(s) 288, 777, 939
BstV1I GCAGC 5 cut(s) 298, 763, 791, 1063, 1199
BstV2I GAAGAC 1 cut(s) 1405
BstX2I RGATCY 3 cut(s) 267, 293, 416
BstXI CCANNNNNNTGG 1 cut(s) 1443
BstYI RGATCY 3 cut(s) 267, 293, 416
Bsu15I ATCGAT 1 cut(s) 584
BsuRI GGCC 5 cut(s) 516, 533, 689, 884, 1339
BsuTUI ATCGAT 1 cut(s) 584
BtsCI GGATG 3 cut(s) 45, 872, 1274
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 732, 864, 1002
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 3 cut(s) 391, 716, 957
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 9 cut(s) 194, 326, 338, 531, 688, 821, 883, 1337, 1538
ClaI ATCGAT 1 cut(s) 584
CseI GACGC 1 cut(s) 648
CsiI ACCWGGT 1 cut(s) 239
Csp6I GTAC 3 cut(s) 399, 508, 1260
CviAII CATG 3 cut(s) 351, 505, 983
CviQI GTAC 3 cut(s) 399, 508, 1260
DdeI CTNAG 6 cut(s) 89, 319, 402, 693, 792, 1317
DpnI GATC 6 cut(s) 269, 295, 418, 924, 1295, 1563
DpnII GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
Eam1104I CTCTTC 2 cut(s) 88, 1129
EarI CTCTTC 2 cut(s) 88, 1129
Eco130I CCWWGG 2 cut(s) 1108, 1204
Eco24I GRGCYC 1 cut(s) 384
Eco31I GGTCTC 2 cut(s) 365, 1098
Eco47I GGWCC 5 cut(s) 194, 326, 338, 821, 1538
EcoO109I RGGNCCY 3 cut(s) 194, 338, 1538
EcoRII CCWGG 2 cut(s) 239, 1442
EcoT14I CCWWGG 2 cut(s) 1108, 1204
EcoT22I ATGCAT 4 cut(s) 25, 506, 979, 1028
EcoT38I GRGCYC 1 cut(s) 384
ErhI CCWWGG 2 cut(s) 1108, 1204
FaeI CATG 3 cut(s) 354, 508, 986
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FaqI GGGAC 4 cut(s) 18, 312, 469, 622
FatI CATG 3 cut(s) 350, 504, 982
FauNDI CATATG 3 cut(s) 187, 409, 1256
FbaI TGATCA 1 cut(s) 1561
Fnu4HI GCNGC 5 cut(s) 312, 777, 780, 1077, 1188
FokI GGATG 3 cut(s) 52, 879, 1281
FriOI GRGCYC 1 cut(s) 384
Fsp4HI GCNGC 5 cut(s) 312, 777, 780, 1077, 1188
FspBI CTAG 1 cut(s) 1071
GluI GCNGC 5 cut(s) 312, 777, 780, 1077, 1188
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 5 cut(s) 516, 533, 689, 884, 1339
HapII CCGG 4 cut(s) 153, 390, 453, 1335
HgaI GACGC 1 cut(s) 648
Hin1II CATG 3 cut(s) 354, 508, 986
HinfI GANTC 3 cut(s) 44, 156, 730
HpaII CCGG 4 cut(s) 153, 390, 453, 1335
HphI GGTGA 2 cut(s) 142, 229
Hpy166II GTNNAC 2 cut(s) 672, 1055
Hpy188I TCNGA 3 cut(s) 92, 1293, 1494
Hpy188III TCNNGA 3 cut(s) 133, 902, 1101
Hpy8I GTNNAC 2 cut(s) 672, 1055
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 3 cut(s) 577, 1173, 1393
HpyCH4III ACNGT 2 cut(s) 654, 998
HpyCH4IV ACGT 2 cut(s) 104, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 320, 1359, 1469
HpyF3I CTNAG 6 cut(s) 89, 319, 402, 693, 792, 1317
HpySE526I ACGT 2 cut(s) 104, 666
Hsp92II CATG 3 cut(s) 354, 508, 986
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 1561
Kzo9I GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
LmnI GCTCC 3 cut(s) 806, 944, 1007
Lsp1109I GCAGC 5 cut(s) 298, 763, 791, 1063, 1199
LweI GCATC 7 cut(s) 10, 32, 356, 763, 852, 964, 1035
MabI ACCWGGT 1 cut(s) 239
MaeI CTAG 1 cut(s) 1071
MaeII ACGT 2 cut(s) 104, 666
MaeIII GTNAC 2 cut(s) 74, 1397
MalI GATC 6 cut(s) 269, 295, 418, 924, 1295, 1563
MboI GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
MboII GAAGA 5 cut(s) 105, 1036, 1116, 1333, 1405
MflI RGATCY 3 cut(s) 267, 293, 416
MhlI GDGCHC 1 cut(s) 384
MluCI AATT 5 cut(s) 612, 963, 1062, 1437, 1456
MmeI TCCRAC 1 cut(s) 583
Mph1103I ATGCAT 4 cut(s) 25, 506, 979, 1028
MroNI GCCGGC 1 cut(s) 389
MroXI GAANNNNTTC 3 cut(s) 1325, 1451, 1529
MseI TTAA 3 cut(s) 63, 1220, 1514
MslI CAYNNNNRTG 3 cut(s) 352, 487, 857
MspI CCGG 4 cut(s) 153, 390, 453, 1335
MspR9I CCNGG 4 cut(s) 241, 454, 1336, 1444
Mva1269I GAATGC 2 cut(s) 897, 1197
MvaI CCWGG 2 cut(s) 241, 1444
MwoI GCNNNNNNNGC 3 cut(s) 320, 1359, 1469
NaeI GCCGGC 1 cut(s) 391
NciI CCSGG 2 cut(s) 454, 1336
NdeI CATATG 3 cut(s) 187, 409, 1256
NdeII GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 354, 508, 986
NlaIV GGNNCC 5 cut(s) 328, 339, 690, 1009, 1116
NsiI ATGCAT 4 cut(s) 25, 506, 979, 1028
NspI RCATGY 1 cut(s) 508
OliI CACNNNNGTG 1 cut(s) 487
PctI GAATGC 2 cut(s) 897, 1197
PdiI GCCGGC 1 cut(s) 391
PdmI GAANNNNTTC 3 cut(s) 1325, 1451, 1529
PfeI GAWTC 3 cut(s) 44, 156, 730
PfoI TCCNGGA 1 cut(s) 1442
PkrI GCNGC 5 cut(s) 313, 778, 781, 1078, 1189
Ppu21I YACGTR 1 cut(s) 667
PpuMI RGGWCCY 3 cut(s) 194, 338, 1538
Psp5II RGGWCCY 3 cut(s) 194, 338, 1538
Psp6I CCWGG 2 cut(s) 239, 1442
PspGI CCWGG 2 cut(s) 239, 1442
PspN4I GGNNCC 5 cut(s) 328, 339, 690, 1009, 1116
PspPI GGNCC 9 cut(s) 194, 326, 338, 531, 688, 821, 883, 1337, 1538
PspPPI RGGWCCY 3 cut(s) 194, 338, 1538
PstI CTGCAG 2 cut(s) 781, 943
PsuI RGATCY 3 cut(s) 267, 293, 416
RsaI GTAC 3 cut(s) 400, 509, 1261
RsaNI GTAC 3 cut(s) 399, 508, 1260
RseI CAYNNNNRTG 3 cut(s) 352, 487, 857
SaqAI TTAA 3 cut(s) 63, 1220, 1514
SatI GCNGC 5 cut(s) 312, 777, 780, 1077, 1188
Sau3AI GATC 6 cut(s) 267, 293, 416, 922, 1293, 1561
Sau96I GGNCC 9 cut(s) 194, 326, 338, 531, 688, 821, 883, 1337, 1538
ScrFI CCNGG 4 cut(s) 241, 454, 1336, 1444
SduI GDGCHC 1 cut(s) 384
SexAI ACCWGGT 1 cut(s) 239
SfaNI GCATC 7 cut(s) 10, 32, 356, 763, 852, 964, 1035
SfcI CTRYAG 3 cut(s) 288, 777, 939
SinI GGWCC 5 cut(s) 194, 326, 338, 821, 1538
SmiMI CAYNNNNRTG 3 cut(s) 352, 487, 857
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SpeI ACTAGT 1 cut(s) 1070
Sse9I AATT 5 cut(s) 612, 963, 1062, 1437, 1456
SspMI CTAG 1 cut(s) 1071
StyD4I CCNGG 4 cut(s) 239, 452, 1334, 1442
StyI CCWWGG 2 cut(s) 1108, 1204
TaaI ACNGT 2 cut(s) 654, 998
TaiI ACGT 2 cut(s) 107, 669
TaqI TCGA 4 cut(s) 134, 584, 681, 1554
TasI AATT 5 cut(s) 612, 963, 1062, 1437, 1456
TatI WGTACW 1 cut(s) 507
TfiI GAWTC 3 cut(s) 44, 156, 730
Tru1I TTAA 3 cut(s) 63, 1220, 1514
Tru9I TTAA 3 cut(s) 63, 1220, 1514
TscAI CASTG 3 cut(s) 732, 864, 1009
TseI GCWGC 5 cut(s) 311, 776, 779, 1076, 1187
TspDTI ATGAA 5 cut(s) 264, 559, 747, 971, 1029
TspGWI ACGGA 1 cut(s) 1117
TspRI CASTG 3 cut(s) 732, 864, 1009
VpaK11BI GGWCC 5 cut(s) 194, 326, 338, 821, 1538
XapI RAATTY 1 cut(s) 963
XceI RCATGY 1 cut(s) 508
XmnI GAANNNNTTC 3 cut(s) 1325, 1451, 1529
XspI CTAG 1 cut(s) 1071
Zsp2I ATGCAT 4 cut(s) 25, 506, 979, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.