Rh6CG389100

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001248
Physical Location & Seq
Reverse (-)
57578896 .. 57579868
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG389100.1

Sequence Viewer

Length: 633 bp
ATGATGCAGCAGCTCATCTTACAGAGGAGATCAAAGGCGCAGATAGAACTGAATTCAACTGGAGCTGTGGTATTTCTATGCATTATATGGGGTTCCTTTTTCTTTTGTGGGCTGTCTGTTGTCACTAGTGCTGCTCGAGTAGTTTATGCCACATCAAGGGATAAATGTATCCCATTTTCACCAATCTGGAGGAAAGTAAACCCAAGGAACAAGGTTCCAACAAATGCTGTGTGGCTTTGTGCTACCATTGGTATGCTGCTTGGATTACCTATCTTGAAAATTGAAGCAGTATTCACAGCCATTGTTTCCATTAGTACAATCGGCTGGGTGGGGGGCTATGCTGTACCGATATTTGCTAGGCTGGTGATGGTCGAACAGAACTTCAAACCAGGACCCTTCTACTTGCGTAGAGCAAGCAGGCCAGTTTGCTTGGTGGCCTTCTTGTGGATATGCTATACCTGTTCAGTGTTCCTATTGCCAGTTACCTACCCTCTTAGGTGGAAAAATTTCAACTATGCACCAGTTGCTGTCGGTGTTGCTTTGGCACTAGTAATGTTTTGGTGGGCTGTGGATGCAAGGAAATGGTTCAAAGGACCTGTAAGAAACATTGATGAACAAAATGGAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

210

Amino Acids

23.69

Weight (kDa)

10.05

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 19 - 179 6.9e-22 Amino acid permease
AA_permease PF00324 21 - 190 5.6e-08 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 52, 505
AfaI GTAC 2 cut(s) 316, 345
AfiI CCNNNNNNNGG 2 cut(s) 156, 444
AgsI TTSAA 6 cut(s) 57, 277, 284, 385, 511, 589
AhlI ACTAGT 2 cut(s) 125, 547
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 2 cut(s) 13, 65
AluI AGCT 2 cut(s) 13, 65
AlwNI CAGNNNCTG 1 cut(s) 527
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 2 cut(s) 419, 435
ApeKI GCWGC 4 cut(s) 7, 10, 131, 256
ApoI RAATTY 2 cut(s) 52, 505
Asp700I GAANNNNTTC 2 cut(s) 506, 584
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 392, 593
AsuHPI GGTGA 2 cut(s) 171, 376
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 2 cut(s) 392, 593
BbvI GCAGC 4 cut(s) 19, 22, 118, 243
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 390
BciVI GTATCC 1 cut(s) 179
BcuI ACTAGT 2 cut(s) 125, 547
BfaI CTAG 3 cut(s) 126, 357, 548
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 4 cut(s) 8, 11, 132, 257
BlsI GCNGC 4 cut(s) 9, 12, 133, 258
Bme1390I CCNGG 1 cut(s) 390
Bme18I GGWCC 2 cut(s) 392, 593
BmeT110I CYCGRG 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 392, 593
BmiI GGNNCC 3 cut(s) 94, 216, 394
BmrFI CCNGG 1 cut(s) 390
BmsI GCATC 1 cut(s) 562
BpmI CTGGAG 2 cut(s) 81, 208
BsaJI CCNNGG 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 444
Bse1I ACTGG 4 cut(s) 64, 422, 479, 521
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 2 cut(s) 156, 444
BseNI ACTGG 4 cut(s) 64, 422, 479, 521
BseRI GAGGAG 1 cut(s) 40
BseXI GCAGC 4 cut(s) 19, 22, 118, 243
BseYI CCCAGC 1 cut(s) 324
BshFI GGCC 2 cut(s) 421, 437
BsiHKCI CYCGRG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 156, 444
BsnI GGCC 2 cut(s) 421, 437
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 1 cut(s) 29
BspANI GGCC 2 cut(s) 421, 437
BspLI GGNNCC 3 cut(s) 94, 216, 394
BsrI ACTGG 4 cut(s) 64, 422, 479, 521
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 2 cut(s) 415, 419
BstDEI CTNAG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstMWI GCNNNNNNNGC 2 cut(s) 524, 572
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 1 cut(s) 388
BstV1I GCAGC 4 cut(s) 19, 22, 118, 243
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 421, 437
BtsCI GGATG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 415, 419
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 392, 593
Csp6I GTAC 2 cut(s) 315, 344
CviQI GTAC 2 cut(s) 315, 344
DdeI CTNAG 1 cut(s) 494
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 392, 593
Eco88I CYCGRG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 392, 593
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 203
FaiI YATR 9 cut(s) 79, 86, 88, 147, 254, 339, 451, 456, 516
Fnu4HI GCNGC 4 cut(s) 8, 11, 132, 257
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 4 cut(s) 8, 11, 132, 257
FspBI CTAG 3 cut(s) 126, 357, 548
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 8, 11, 132, 257
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 2 cut(s) 81, 208
HaeIII GGCC 2 cut(s) 421, 437
HhaI GCGC 1 cut(s) 40
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HphI GGTGA 2 cut(s) 171, 376
Hpy166II GTNNAC 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 187, 274
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 2 cut(s) 406, 448
HpyCH4V TGCA 4 cut(s) 7, 81, 518, 575
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 572
HpyF3I CTNAG 1 cut(s) 494
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 62
Lsp1109I GCAGC 4 cut(s) 19, 22, 118, 243
LweI GCATC 1 cut(s) 562
MaeI CTAG 3 cut(s) 126, 357, 548
MaeIII GTNAC 2 cut(s) 121, 481
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MluCI AATT 3 cut(s) 52, 279, 505
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 3 cut(s) 18, 183, 501
Mph1103I ATGCAT 1 cut(s) 83
MroXI GAANNNNTTC 2 cut(s) 506, 584
MslI CAYNNNNRTG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 390
MvaI CCWGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 524, 572
NdeII GATC 1 cut(s) 29
NlaIV GGNNCC 3 cut(s) 94, 216, 394
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 135
PdmI GAANNNNTTC 2 cut(s) 506, 584
PkrI GCNGC 4 cut(s) 9, 12, 133, 258
PpuMI RGGWCCY 2 cut(s) 392, 593
Psp5II RGGWCCY 2 cut(s) 392, 593
Psp6I CCWGG 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 94, 216, 394
PspPI GGNCC 2 cut(s) 392, 593
PspPPI RGGWCCY 2 cut(s) 392, 593
PspXI VCTCGAGB 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 527
RsaI GTAC 2 cut(s) 316, 345
RsaNI GTAC 2 cut(s) 315, 344
RseI CAYNNNNRTG 1 cut(s) 251
SatI GCNGC 4 cut(s) 8, 11, 132, 257
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 2 cut(s) 392, 593
ScrFI CCNGG 1 cut(s) 390
SetI ASST 8 cut(s) 15, 67, 216, 271, 461, 488, 500, 598
SfaNI GCATC 1 cut(s) 562
Sfr274I CTCGAG 1 cut(s) 135
SinI GGWCC 2 cut(s) 392, 593
SlaI CTCGAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SpeI ACTAGT 2 cut(s) 125, 547
Sse9I AATT 3 cut(s) 52, 279, 505
SspMI CTAG 3 cut(s) 126, 357, 548
StyD4I CCNGG 1 cut(s) 388
StyI CCWWGG 1 cut(s) 203
TaqI TCGA 2 cut(s) 136, 372
TasI AATT 3 cut(s) 52, 279, 505
TatI WGTACW 1 cut(s) 314
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 4 cut(s) 7, 10, 131, 256
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 627
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 2 cut(s) 392, 593
XapI RAATTY 2 cut(s) 52, 505
XhoI CTCGAG 1 cut(s) 135
XmnI GAANNNNTTC 2 cut(s) 506, 584
XspI CTAG 3 cut(s) 126, 357, 548
Zsp2I ATGCAT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.