Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Reverse (-)

24576145 .. 24576645

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAGTACAAACCAATCTTAGCATCACCACAGACCGGTCTGCTCTTCTTGCTCTCAAAGCCCGTATCACCAATGACCCTCGAAACAAAGTCTTCACCAACTGGTCAACCACAACCCCTGTTTGTAACTGGGTTGGAGTCACTTGTGGTGCACGCCATCATCGAATCGCAAAGTTGGACGTATCTAACTTTGGTCTCACAGGCACCATTCCTCCGGAGCTAGGCAACTTATCTTTTCTTGTTGTTCTGGACTTTAAAAATAATAGCTTTCACGGCATCTTGCCTCAAGAATTGGCTTGCCTGCGTCGGTTGAAGTTTATAAGCTTGAGAAACAACAAGTTCATGGGAGTCATTCCATCATGGTTTGGCTCCTTATTCAAACTTCAAGTATTCAGTTTGTTTGGTAATCAATTTTCAGGTTCCATACCAGCTACAATCTTCAACTTATCTGCTCTGCAAATAATTATTCTGGATGATAACCAACTCTCAGGTATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

166

Amino Acids

18.4

Weight (kDa)

9.94

Isoelectric Point (pI)

25.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	11 - 49	7.4e-12	Leucine rich repeat N-terminal domain
LRR_14	PF23598	69 - 152	4e-07	Leucine-rich repeat region
LRR_8	PF13855	102 - 162	5.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccB1I	GGYRCC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	214
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	36, 221
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	4 cut(s)	313, 379, 386, 442
AluBI	AGCT	4 cut(s)	220, 267, 324, 431
AluI	AGCT	4 cut(s)	220, 267, 324, 431
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	200
Alw44I	GTGCAC	1 cut(s)	150
Aor13HI	TCCGGA	1 cut(s)	214
ApaLI	GTGCAC	1 cut(s)	150
AsiGI	ACCGGT	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	19, 61, 88
BaeGI	GKGCMC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	154
BccI	CCATC	2 cut(s)	165, 364
BceAI	ACGGC	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	205, 370, 421
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	33, 285
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	85
BpuEI	CTTGAG	2 cut(s)	270, 346
BsaI	GGTCTC	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	36, 214
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 221
Bse118I	RCCGGY	1 cut(s)	36
Bse1I	ACTGG	2 cut(s)	107, 134
BseAI	TCCGGA	1 cut(s)	214
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	36, 221
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	107, 134
BseSI	GKGCMC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	37, 215
BslI	CCNNNNNNNGG	2 cut(s)	36, 221
BsmAI	GTCTC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	500
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	3 cut(s)	205, 370, 421
BspQI	GCTCTTC	1 cut(s)	51
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	36
BsrI	ACTGG	2 cut(s)	107, 134
BssAI	RCCGGY	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	154, 298, 302
BstDEI	CTNAG	2 cut(s)	20, 487
BstF5I	GGATG	1 cut(s)	478
BstMAI	GTCTC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 273
BstSLI	GKGCMC	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	154, 298, 302
Cfr10I	RCCGGY	1 cut(s)	36
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	2 cut(s)	343, 360
CviJI	RGCY	7 cut(s)	62, 220, 267, 296, 324, 369, 431
CviKI_1	RGCY	7 cut(s)	62, 220, 267, 296, 324, 369, 431
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	2 cut(s)	20, 487
DraI	TTTAAA	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	200
FaeI	CATG	2 cut(s)	346, 363
FaiI	YATR	5 cut(s)	320, 344, 361, 425, 494
FatI	CATG	2 cut(s)	342, 359
FokI	GGATG	1 cut(s)	485
FspBI	CTAG	1 cut(s)	221
HapII	CCGG	2 cut(s)	37, 215
HgaI	GACGC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	346, 363
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	322
HinfI	GANTC	3 cut(s)	138, 165, 348
HpaII	CCGG	2 cut(s)	37, 215
HphI	GGTGA	3 cut(s)	19, 61, 88
Hpy166II	GTNNAC	2 cut(s)	108, 152
Hpy188III	TCNNGA	4 cut(s)	215, 248, 287, 470
Hpy8I	GTNNAC	2 cut(s)	108, 152
Hpy99I	CGWCG	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	152, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 273
HpyF3I	CTNAG	2 cut(s)	20, 487
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	346, 363
Kpn2I	TCCGGA	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	217, 374
LweI	GCATC	2 cut(s)	33, 285
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	125, 139
MboII	GAAGA	3 cut(s)	38, 85, 430
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	290, 410, 462
MlyI	GAGTC	2 cut(s)	147, 357
MmeI	TCCRAC	2 cut(s)	115, 156
MnlI	CCTC	3 cut(s)	90, 222, 294
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	1 cut(s)	255
MspI	CCGG	2 cut(s)	37, 215
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 273
NlaIII	CATG	2 cut(s)	346, 363
NlaIV	GGNNCC	3 cut(s)	205, 370, 421
NmuCI	GTSAC	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	36
PleI	GAGTC	2 cut(s)	146, 356
PpsI	GAGTC	2 cut(s)	146, 356
PsiI	TTATAA	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	205, 370, 421
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	1 cut(s)	255
SchI	GAGTC	2 cut(s)	147, 357
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	7 cut(s)	183, 222, 269, 326, 421, 433, 493
SfaNI	GCATC	2 cut(s)	33, 285
SmlI	CTYRAG	2 cut(s)	285, 325
SmoI	CTYRAG	2 cut(s)	285, 325
Sse9I	AATT	3 cut(s)	290, 410, 462
SspMI	CTAG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	82, 163
TasI	AATT	3 cut(s)	290, 410, 462
TatI	WGTACW	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.