Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Forward (+)

40978435 .. 40979855

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0263800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATCAAGACTACTATAGGAGGAGTCATCAAGTTCCTGCTTTTGGGAGCTGGGATTGGAACCAAGACCTTCCCTTCACTCAGTGCTTTGAGTCTGCAAGGCAAGCTGGGTTTCTGCGCTACACTACTTACACTGATGAACATGATCAGGATCGCGATTTGTATGTCACCGGGGATTTGTACCAGAACGATGTCGTCACTCCCGCGATGATCGTTGTTCCTCGCCGAAGGAACAAGATGCGTCACCCGCAAGTGAAAGAAGCAAAAGAGGAGGGTTGGGTCATGGGTGAGGTGAAGGAGCCACCAAGCCCACCTCCAAGGTCCAGGCCCAATCCCAAGCCTGTGGATGAAGATTTGTACAAAATCTCACCTGAACTCCTCTATGCTAAAGCCAAAAAGAAGAGAGGATTGGGTTTCTTTTCAAGCTGCTTGCTGCCAACATGTGTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

7.7

Isoelectric Point (pI)

67.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	156, 206
AciI	CCGC	2 cut(s)	204, 248
AclWI	GGATC	2 cut(s)	12, 159
AdeI	CACNNNGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	182, 359
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflIII	ACRYGT	1 cut(s)	440
AgsI	TTSAA	1 cut(s)	423
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	3 cut(s)	51, 107, 426
AluI	AGCT	3 cut(s)	51, 107, 426
AlwI	GGATC	2 cut(s)	12, 159
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	426, 433
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	321, 327
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	5 cut(s)	160, 236, 299, 304, 360
AvaII	GGWCC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	413, 420
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	145
BcnI	CCSGG	1 cut(s)	172
BfmI	CTRYAG	1 cut(s)	16
BisI	GCNGC	2 cut(s)	427, 434
BlsI	GCNGC	2 cut(s)	428, 435
Bme1390I	CCNGG	2 cut(s)	172, 325
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	321, 327
BmiI	GGNNCC	2 cut(s)	62, 300
BmrFI	CCNGG	2 cut(s)	172, 325
BmsI	GCATC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	171, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	171, 317
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	3 cut(s)	37, 284, 368
BseXI	GCAGC	2 cut(s)	413, 420
BseYI	CCCAGC	2 cut(s)	51, 107
Bsh1236I	CGCG	2 cut(s)	156, 206
BshFI	GGCC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	328
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	4 cut(s)	4, 145, 151, 210
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	2 cut(s)	204, 248
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	156, 206
BspLI	GGNNCC	2 cut(s)	62, 300
BspPI	GGATC	2 cut(s)	12, 159
BsrGI	TGTACA	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	171, 317
BssMI	GATC	4 cut(s)	4, 145, 151, 210
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	105, 431
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	156, 206
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	4 cut(s)	7, 148, 154, 213
BstMBI	GATC	4 cut(s)	4, 145, 151, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 247
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	444
BstSCI	CCNGG	2 cut(s)	170, 323
BstSFI	CTRYAG	1 cut(s)	16
BstUI	CGCG	2 cut(s)	156, 206
BstV1I	GCAGC	2 cut(s)	413, 420
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	2 cut(s)	89, 132
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	105, 431
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	321, 327
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	181, 358
CviAII	CATG	3 cut(s)	143, 283, 441
CviJI	RGCY	9 cut(s)	51, 107, 301, 309, 328, 340, 392, 426, 450
CviKI_1	RGCY	9 cut(s)	51, 107, 301, 309, 328, 340, 392, 426, 450
CviQI	GTAC	2 cut(s)	181, 358
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	6, 147, 153, 212
DpnII	GATC	4 cut(s)	4, 145, 151, 210
DraIII	CACNNNGTG	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	146, 286, 444
FaiI	YATR	6 cut(s)	18, 144, 165, 284, 384, 442
FatI	CATG	3 cut(s)	142, 282, 440
FauI	CCCGC	2 cut(s)	211, 255
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	427, 434
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	2 cut(s)	427, 434
GlaI	GCGC	1 cut(s)	119
GluI	GCNGC	2 cut(s)	427, 434
GsaI	CCCAGC	2 cut(s)	55, 111
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	3 cut(s)	146, 286, 444
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	25, 92
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	5 cut(s)	160, 236, 299, 304, 360
Hpy188III	TCNNGA	3 cut(s)	8, 149, 155
HpyAV	CCTTC	4 cut(s)	80, 85, 222, 289
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 247
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	146, 286, 444
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	4, 145, 151, 210
LmnI	GCTCC	2 cut(s)	48, 298
Lsp1109I	GCAGC	2 cut(s)	413, 420
LweI	GCATC	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	166, 196, 242
MalI	GATC	4 cut(s)	6, 147, 153, 212
MboI	GATC	4 cut(s)	4, 145, 151, 210
MboII	GAAGA	2 cut(s)	362, 412
MlyI	GAGTC	2 cut(s)	34, 101
MnlI	CCTC	8 cut(s)	15, 231, 262, 265, 283, 324, 389, 398
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	172, 325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	156, 206
MwoI	GCNNNNNNNGC	2 cut(s)	104, 247
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	4 cut(s)	4, 145, 151, 210
NlaIII	CATG	3 cut(s)	146, 286, 444
NlaIV	GGNNCC	2 cut(s)	62, 300
NmuCI	GTSAC	3 cut(s)	166, 196, 242
NruI	TCGCGA	1 cut(s)	156
NspI	RCATGY	1 cut(s)	444
PciI	ACATGT	1 cut(s)	440
PkrI	GCNGC	2 cut(s)	428, 435
PleI	GAGTC	2 cut(s)	33, 100
PpsI	GAGTC	2 cut(s)	33, 100
PscI	ACATGT	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	2 cut(s)	51, 107
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	62, 300
PspPI	GGNCC	2 cut(s)	321, 327
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	2 cut(s)	182, 359
RsaNI	GTAC	2 cut(s)	181, 358
SatI	GCNGC	2 cut(s)	427, 434
Sau3AI	GATC	4 cut(s)	4, 145, 151, 210
Sau96I	GGNCC	2 cut(s)	321, 327
SchI	GAGTC	2 cut(s)	34, 101
ScrFI	CCNGG	2 cut(s)	172, 325
SetI	ASST	8 cut(s)	53, 72, 109, 294, 316, 323, 373, 428
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	321
SsiI	CCGC	2 cut(s)	204, 248
StyD4I	CCNGG	2 cut(s)	170, 323
StyI	CCWWGG	1 cut(s)	317
TatI	WGTACW	1 cut(s)	357
TscAI	CASTG	2 cut(s)	89, 139
TseFI	GTSAC	3 cut(s)	166, 196, 242
TseI	GCWGC	2 cut(s)	426, 433
Tsp45I	GTSAC	3 cut(s)	166, 196, 242
TspDTI	ATGAA	2 cut(s)	153, 363
TspRI	CASTG	2 cut(s)	89, 139
VpaK11BI	GGWCC	1 cut(s)	321
XceI	RCATGY	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.