Rorug06G0263900

Amino-acid permease BAT1 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
40996519 .. 40998961
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0263900.1

Sequence Viewer

Length: 393 bp
ATGCCAACTGAGGTAAACCACCTGCCTGATCATGACTCCAAACCCATCAGTACTACTCTTTGCTGGCTTGACAAAATGAAGGCTCTGTCTCATCAAGAAGATGAATTAGCCAAGGCAGTACAGAAGAAGATTGTAAGGAAGAATTTAACAGCAAATAAACCTGCTTCAAATCAGAAGAAGACTTGCATATGCGCTCCAACTCAACACGAAGGTTCATTTAGGTGTCACCTCCATCGAGTCAGCGTAGAATCACATAATAAGTCAAACATTAATGCCAAGAATGTTCTTGATCTGGATGGTAAACAGCCTAGGCTATCCAGATTTGGTAGGGATGCATCTACTAGAGCTTGCCATGACAGCCTACCTTTAACGATGGCTGAGCAAGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.59

Weight (kDa)

9.22

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 30
Acc36I ACCTGC 2 cut(s) 30, 169
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 2 cut(s) 52, 120
AgsI TTSAA 1 cut(s) 168
AluBI AGCT 1 cut(s) 347
AluI AGCT 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 142
AseI ATTAAT 1 cut(s) 270
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 218
AvrII CCTAGG 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 185
BccI CCATC 4 cut(s) 53, 240, 290, 367
BclI TGATCA 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 309, 342
BfuAI ACCTGC 2 cut(s) 30, 169
BlnI CCTAGG 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 378
BmcAI AGTACT 1 cut(s) 52
BmsI GCATC 2 cut(s) 322, 344
BpiI GAAGAC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 111, 308
BseDI CCNNGG 2 cut(s) 111, 308
BseGI GGATG 2 cut(s) 301, 337
BseMII CTCAG 1 cut(s) 369
BsmAI GTCTC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 28, 289
Bsp1720I GCTNAGC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 31
BspMI ACCTGC 2 cut(s) 30, 169
BssECI CCNNGG 2 cut(s) 111, 308
BssMI GATC 2 cut(s) 28, 289
BssT1I CCWWGG 2 cut(s) 111, 308
BstC8I GCNNGC 2 cut(s) 65, 349
BstDEI CTNAG 2 cut(s) 9, 378
BstF5I GGATG 2 cut(s) 301, 337
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 31, 292
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 28, 289
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 185
BtsCI GGATG 2 cut(s) 301, 337
BveI ACCTGC 2 cut(s) 30, 169
Cac8I GCNNGC 2 cut(s) 65, 349
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 51, 119
CviAII CATG 2 cut(s) 32, 353
CviJI RGCY 8 cut(s) 67, 83, 110, 307, 313, 347, 360, 377
CviKI_1 RGCY 8 cut(s) 67, 83, 110, 307, 313, 347, 360, 377
CviQI GTAC 2 cut(s) 51, 119
DdeI CTNAG 2 cut(s) 9, 378
DpnI GATC 2 cut(s) 30, 291
DpnII GATC 2 cut(s) 28, 289
Eco130I CCWWGG 2 cut(s) 111, 308
EcoT14I CCWWGG 2 cut(s) 111, 308
EcoT22I ATGCAT 1 cut(s) 337
ErhI CCWWGG 2 cut(s) 111, 308
FaeI CATG 2 cut(s) 35, 356
FaiI YATR 5 cut(s) 33, 188, 190, 255, 354
FatI CATG 2 cut(s) 31, 352
FauNDI CATATG 1 cut(s) 188
FbaI TGATCA 1 cut(s) 28
FokI GGATG 2 cut(s) 308, 344
FspBI CTAG 2 cut(s) 309, 342
GlaI GCGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 194
Hin1II CATG 2 cut(s) 35, 356
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 3 cut(s) 35, 237, 248
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 2 cut(s) 16, 302
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 5 cut(s) 32, 95, 287, 293, 318
Hpy8I GTNNAC 2 cut(s) 16, 302
HpyAV CCTTC 2 cut(s) 73, 203
HpyCH4V TGCA 2 cut(s) 186, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 9, 378
Hsp92II CATG 2 cut(s) 35, 356
HspAI GCGC 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 2 cut(s) 28, 289
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 35, 39, 49, 174, 278, 331
LweI GCATC 2 cut(s) 322, 344
MaeI CTAG 2 cut(s) 309, 342
MaeIII GTNAC 1 cut(s) 224
MalI GATC 2 cut(s) 30, 291
MboI GATC 2 cut(s) 28, 289
MboII GAAGA 6 cut(s) 110, 136, 139, 151, 187, 190
MluCI AATT 3 cut(s) 104, 142, 388
MlyI GAGTC 2 cut(s) 29, 246
MmeI TCCRAC 1 cut(s) 221
MnlI CCTC 2 cut(s) 4, 239
Mph1103I ATGCAT 1 cut(s) 337
MseI TTAA 5 cut(s) 146, 270, 368, 387, 391
MslI CAYNNNNRTG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeI CATATG 1 cut(s) 188
NdeII GATC 2 cut(s) 28, 289
NlaIII CATG 2 cut(s) 35, 356
NmuCI GTSAC 1 cut(s) 224
NsiI ATGCAT 1 cut(s) 337
PacI TTAATTAA 1 cut(s) 391
PagI TCATGA 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 248
PleI GAGTC 2 cut(s) 29, 245
PpsI GAGTC 2 cut(s) 29, 245
PshBI ATTAAT 1 cut(s) 270
RsaI GTAC 2 cut(s) 52, 120
RsaNI GTAC 2 cut(s) 51, 119
RseI CAYNNNNRTG 1 cut(s) 220
SaqAI TTAA 5 cut(s) 146, 270, 368, 387, 391
Sau3AI GATC 2 cut(s) 28, 289
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 2 cut(s) 29, 246
SetI ASST 8 cut(s) 15, 24, 163, 214, 224, 231, 349, 367
SfaNI GCATC 2 cut(s) 322, 344
SmiMI CAYNNNNRTG 1 cut(s) 220
Sse9I AATT 3 cut(s) 104, 142, 388
SspMI CTAG 2 cut(s) 309, 342
StyI CCWWGG 2 cut(s) 111, 308
TaqI TCGA 1 cut(s) 235
TasI AATT 3 cut(s) 104, 142, 388
TatI WGTACW 2 cut(s) 50, 118
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 5 cut(s) 146, 270, 368, 387, 391
Tru9I TTAA 5 cut(s) 146, 270, 368, 387, 391
TseFI GTSAC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 92, 117, 204
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 142
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 2 cut(s) 309, 342
ZrmI AGTACT 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.