Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Forward (+)

36230912 .. 36232255

Gene Structure 1344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1162300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTACCTCTGGTGGCACAGCCAACACAGACAGCTTCCTACGTCTTCACACATTTCGAAACATCTCCAAAGACAACTGGAGTATCCAGCATACCTTATGCGGTGATTTTATCTGTGCTTCTTAGCAACTACTGTTTATATGGTTATGATGCAGCCGCTCATCTCACTGAGGAGACAAAAGGTGCAGATAGGACTGGTCCTATTGCCATTCTCTCTAGTATTGCCCTTGTATCAGTATTTGGTTGGGCTTATTACTTGGCTCTCACTTTCAGCATCAAGGACTTGGAGTATTTATACAGGGAGGACAATGAGACTGGTGGTGCACTTGTACCAGCACAGATAATATATGATGCATTCTATGGGAGGTTTCATAGTTCAACTGGAGCTGTTCTTTTCATGATTATCATATGGGGTTCCTTCTTCTTCTGTGGACTATCTGTAACCACAATGGCCGCCAGAGCAGTTTACGCTGTATCAAGAGATAAATGCATCCCATTTTCGCCAATCTGGAGGAAAGTGCATCCAAAGAGCAAGGTTCCAATAAACGCGGTGTGGCTTTGCACAACAATCACTTTGCTGCTGGGATTACCGATCCTGAAACTTGACGTGGTGTTCACCGCCATTCTTTCTGTCAGTACAGTTGGTTGGGTGGGCAGCTACGCTGTGCCAATTTTCGCAAGGCTGGTGATGGCTGAAGAGAGCTTCAAACCGGGACCATTTTATTTGGGGAGAGCAAGAAGGCCAGTTTGCTTTGTGGCCGTCCTTTGGATATGCTATACATGCTCAATATTTCTTTTGCCAACTTCTTACCCTCTTAGATTGAGAACATTAAACTATGCACCAATAGCTCTTGGTGCTGCTTTGGCTCTGGTAATGCTTTGGTGGGTTTTGGATGCAAGGAAATGGTACAAAGGACCGGTAAGAAACATTGATGTACAAAATGGACACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

318

Amino Acids

35.18

Weight (kDa)

9.09

Isoelectric Point (pI)

36.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	15 - 284	1.4e-34	Amino acid permease
AA_permease	PF00324	42 - 303	1.4e-09	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	548
AciI	CCGC	5 cut(s)	101, 156, 453, 548, 618
AclWI	GGATC	1 cut(s)	586
AcoI	YGGCCR	2 cut(s)	450, 756
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	4 cut(s)	330, 637, 908, 936
AfiI	CCNNNNNNNGG	1 cut(s)	765
AgeI	ACCGGT	1 cut(s)	916
AgsI	TTSAA	2 cut(s)	378, 706
AjiI	CACGTC	1 cut(s)	607
AluBI	AGCT	5 cut(s)	35, 386, 657, 702, 848
AluI	AGCT	5 cut(s)	35, 386, 657, 702, 848
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	167, 305
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	586
AoxI	GGCC	3 cut(s)	450, 740, 756
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	4 cut(s)	152, 577, 654, 857
AsiGI	ACCGGT	1 cut(s)	916
AspS9I	GGNCC	3 cut(s)	197, 713, 914
AsuC2I	CCSGG	1 cut(s)	711
AsuHPI	GGTGA	3 cut(s)	115, 607, 697
AsuII	TTCGAA	1 cut(s)	57
AvaII	GGWCC	3 cut(s)	197, 713, 914
BaeGI	GKGCMC	1 cut(s)	325
BaeI	ACNNNNGTAYC	2 cut(s)	66, 99
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	4 cut(s)	164, 564, 666, 844
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	1 cut(s)	743
BciVI	GTATCC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	711
BcoDI	GTCTC	2 cut(s)	167, 305
BfaI	CTAG	1 cut(s)	216
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	6 cut(s)	153, 156, 453, 578, 655, 858
BlsI	GCNGC	6 cut(s)	154, 157, 454, 579, 656, 859
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	3 cut(s)	197, 713, 914
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	3 cut(s)	197, 713, 914
BmiI	GGNNCC	3 cut(s)	415, 537, 714
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	6 cut(s)	139, 282, 340, 498, 529, 883
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	3 cut(s)	99, 402, 529
Bpu14I	TTCGAA	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	711
BsaWI	WCCGGW	1 cut(s)	916
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse118I	RCCGGY	1 cut(s)	916
Bse1I	ACTGG	5 cut(s)	82, 199, 319, 385, 743
BseGI	GGATG	3 cut(s)	489, 520, 898
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	5 cut(s)	82, 199, 319, 385, 743
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	4 cut(s)	164, 564, 666, 844
BseYI	CCCAGC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	3 cut(s)	452, 742, 758
BshTI	ACCGGT	1 cut(s)	916
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	710, 917
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	2 cut(s)	167, 305
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	3 cut(s)	452, 742, 758
Bsp119I	TTCGAA	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	934
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	5 cut(s)	101, 156, 453, 548, 618
BspANI	GGCC	3 cut(s)	452, 742, 758
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	3 cut(s)	415, 537, 714
BspPI	GGATC	1 cut(s)	586
BspT104I	TTCGAA	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	916
BsrGI	TGTACA	1 cut(s)	934
BsrI	ACTGG	5 cut(s)	82, 199, 319, 385, 743
BssAI	RCCGGY	1 cut(s)	916
BssMI	GATC	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	134, 640
Bst6I	CTCTTC	1 cut(s)	690
BstAUI	TGTACA	1 cut(s)	934
BstBI	TTCGAA	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	122, 168, 815
BstF5I	GGATG	3 cut(s)	489, 520, 898
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	167, 305
BstMBI	GATC	1 cut(s)	591
BstMWI	GCNNNNNNNGC	6 cut(s)	458, 467, 780, 845, 854, 863
BstNSI	RCATGY	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	4 cut(s)	164, 564, 666, 844
BstV2I	GAAGAC	1 cut(s)	37
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	452, 742, 758
BtrI	CACGTC	1 cut(s)	607
BtsCI	GGATG	3 cut(s)	489, 520, 898
BtsIMutI	CAGTG	1 cut(s)	165
CciI	TCATGA	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	916
Cfr13I	GGNCC	3 cut(s)	197, 713, 914
Csp6I	GTAC	4 cut(s)	329, 636, 907, 935
CspAI	ACCGGT	1 cut(s)	916
CviAII	CATG	2 cut(s)	397, 780
CviQI	GTAC	4 cut(s)	329, 636, 907, 935
DdeI	CTNAG	3 cut(s)	122, 168, 815
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	450, 756
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco47I	GGWCC	3 cut(s)	197, 713, 914
Eco57I	CTGAAG	1 cut(s)	714
EcoT22I	ATGCAT	2 cut(s)	355, 491
FaeI	CATG	2 cut(s)	400, 783
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	2 cut(s)	396, 779
FauNDI	CATATG	1 cut(s)	407
Fnu4HI	GCNGC	6 cut(s)	153, 156, 453, 578, 655, 858
FokI	GGATG	3 cut(s)	476, 507, 905
Fsp4HI	GCNGC	6 cut(s)	153, 156, 453, 578, 655, 858
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	6 cut(s)	153, 156, 453, 578, 655, 858
GsaI	CCCAGC	1 cut(s)	584
GsuI	CTGGAG	3 cut(s)	99, 402, 529
HaeIII	GGCC	3 cut(s)	452, 742, 758
HapII	CCGG	2 cut(s)	710, 917
Hin1II	CATG	2 cut(s)	400, 783
HpaII	CCGG	2 cut(s)	710, 917
HphI	GGTGA	3 cut(s)	115, 607, 697
Hpy166II	GTNNAC	4 cut(s)	323, 431, 466, 615
Hpy188III	TCNNGA	4 cut(s)	397, 477, 508, 595
Hpy8I	GTNNAC	4 cut(s)	323, 431, 466, 615
HpyAV	CCTTC	2 cut(s)	427, 732
HpyCH4III	ACNGT	2 cut(s)	134, 640
HpyCH4IV	ACGT	2 cut(s)	42, 606
HpyCH4V	TGCA	9 cut(s)	152, 185, 323, 353, 489, 520, 561, 839, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	458, 467, 780, 845, 854, 863
HpyF3I	CTNAG	3 cut(s)	122, 168, 815
HpySE526I	ACGT	2 cut(s)	42, 606
Hsp92II	CATG	2 cut(s)	400, 783
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	383
Lsp1109I	GCAGC	4 cut(s)	164, 564, 666, 844
LweI	GCATC	6 cut(s)	139, 282, 340, 498, 529, 883
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	2 cut(s)	42, 606
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	593
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	1 cut(s)	591
MboII	GAAGA	4 cut(s)	37, 412, 415, 707
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	1 cut(s)	669
MnlI	CCTC	6 cut(s)	18, 163, 295, 357, 504, 822
Mph1103I	ATGCAT	2 cut(s)	355, 491
MseI	TTAA	2 cut(s)	830, 952
MspI	CCGG	2 cut(s)	710, 917
MspR9I	CCNGG	1 cut(s)	711
Mva1269I	GAATGC	1 cut(s)	353
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	6 cut(s)	458, 467, 780, 845, 854, 863
NciI	CCSGG	1 cut(s)	711
NdeI	CATATG	1 cut(s)	407
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	2 cut(s)	400, 783
NlaIV	GGNNCC	3 cut(s)	415, 537, 714
NsiI	ATGCAT	2 cut(s)	355, 491
NspI	RCATGY	1 cut(s)	783
NspV	TTCGAA	1 cut(s)	57
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	916
PkrI	GCNGC	6 cut(s)	154, 157, 454, 579, 656, 859
PspFI	CCCAGC	1 cut(s)	580
PspN4I	GGNNCC	3 cut(s)	415, 537, 714
PspPI	GGNCC	3 cut(s)	197, 713, 914
RsaI	GTAC	4 cut(s)	330, 637, 908, 936
RsaNI	GTAC	4 cut(s)	329, 636, 907, 935
SaqAI	TTAA	2 cut(s)	830, 952
SatI	GCNGC	6 cut(s)	153, 156, 453, 578, 655, 858
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	3 cut(s)	197, 713, 914
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	6 cut(s)	139, 282, 340, 498, 529, 883
SfuI	TTCGAA	1 cut(s)	57
SinI	GGWCC	3 cut(s)	197, 713, 914
Sse9I	AATT	1 cut(s)	669
SsiI	CCGC	5 cut(s)	101, 156, 453, 548, 618
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	709
TaaI	ACNGT	2 cut(s)	134, 640
TaiI	ACGT	2 cut(s)	45, 609
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	669
TatI	WGTACW	2 cut(s)	635, 934
TauI	GCSGC	2 cut(s)	158, 455
Tru1I	TTAA	2 cut(s)	830, 952
Tru9I	TTAA	2 cut(s)	830, 952
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	4 cut(s)	152, 577, 654, 857
TspDTI	ATGAA	2 cut(s)	359, 385
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	197, 713, 914
XceI	RCATGY	1 cut(s)	783
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	2 cut(s)	355, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.