RchiOBHm_Chr6g0296641

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001248
Physical Location & Seq
Forward (+)
58401507 .. 58404008
2502 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26626

Sequence Viewer

Length: 1578 bp
ATGGATTCTGGAGAAAAGCGTCTGAATGAGCTTGGTTATAAGCAAGAACTGAGGAGGGAGATGACGCTGTTCAAGACACTGGCAATAACCTTTTCATGCATATCAGTATTTTCTGGTACACCTCTCTATGGCCAAAGCTTGCGCTATGCAGGTCCTGCGACCTTAATATGGGGTTGGGTAGCTGTCACATTCTTCACATGGTTTGTTGCAATCGCCATGGCTGAGATTTGCTCCTCTTTCCCTACCACTGGTTCTCTTTACTTCTGGGCTTCCCATTTGGCTGGACCCAGGTGGGGTCCGTTTGCTTCGTGGTGCTGTGCTTGGCTTGAGACTATTGGCGTGATATCTGCAATAGGTGCTCAGGCGTATTCTGCATCACAAGCATTGCAGATGATCATCCTTATAGCCACAGGAACAAACAAGGGTGGAGGCTATTTTGCATCAAAGGAAGTTTTTTTGTGCATGTATGTAGGTCTAATCCTCATATGGGCAGTACTAAACACATTTGCCCTACAAGTGATAGCATTTCTCAACATAATTTCCATATGGTGGCAGTCAATTACTATGCAGGTACTTGGTGGTTTGCTTGTGATTATAATGCTTCCTCTGGTGGCACAGACGACACAGTCAGCTTCTTATGTCTTCACACATTTTGAAACTTCTCCTGAGTTGACTGGGATATCTAGCATACCTTATGCAGTGATTTTATCAGTTCTTCTGAGCATCTACTCTCTATACGGTTTTGATGCTGCAGCTCATCTTACTGAGGAGACGAAAGGCGCAGATAGAACTGGTCCTATAGCCATTCTATCTAGTTTTGGGATTATATCAGTGCTTGGTTGGGCTTATTACATAGCTCTCACATTCAGCATTCGCGATGTAGACTATTTGTACAATGTAGACAATGAGACTGCTGGTGCACTTGTACCAGCACAGATAATATACGAAGCATTCTATGGGAGGTTTCATAATTCAAACGGAGCTGTGGCTTTCCTCTGTATCATCTGGGGTTCCTACTTCTTTTGTGGGTTGTCAGTTATCACCACAGCTGCCCGAGTAGCTCTATCAAGGGATAATGGCATCCCCTTTTCACCAATTTGGAGGAAAGTGCATCCAAGAAGCAAGGTCCCAACAAATGCAGTGTGGCTCTGCGCAGCCATCGGTATCCTGCTAGGATTACCCATCTTGAAACTTGACTTGGTATTCACAGCCATCATTTCAGTTAGTACAATTGGTTGGGTGGGTGGTTATGCAGTACCTATTTTTGCTAGGCTGGTGATGGTTGAAGAGAAATTCAAAGCAGGACCCTTCTATTTGGGCAGAGGAAGCAGGCCAGTTTGCTTTGTGGCTTTTGTGTGGATATGTTATGCATGTTCTACCTTCTTATTGCCAACTTTCTATCCTCTTAGATGGAAAACTTTCAATTATGCACCAATTGCTCTTAGTGTTGTTTTGACACTGATAATGCTTTGGTGGGTTTTGGATGCAAGGAAATGGTTCAAAGGACCTGTGAGAAACATTGATTTACCAGAGAGAAACTATAAGAATCCTCTCATTCAGACAAATGACCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

525

Amino Acids

58.24

Weight (kDa)

8.83

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 23 - 482 2.5e-42 Amino acid permease
AA_permease PF00324 44 - 500 2e-17 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 596
AasI GACNNNNNNGTC 1 cut(s) 625
Acc16I TGCGCA 1 cut(s) 1153
Acc36I ACCTGC 2 cut(s) 140, 559
AccB7I CCANNNNNTGG 1 cut(s) 549
AccI GTMKAC 2 cut(s) 882, 900
AccII CGCG 1 cut(s) 876
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 1292
AfaI GTAC 7 cut(s) 118, 495, 573, 893, 927, 1228, 1257
AfiI CCNNNNNNNGG 6 cut(s) 128, 168, 248, 293, 487, 549
AgsI TTSAA 8 cut(s) 73, 656, 975, 1189, 1286, 1297, 1423, 1501
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 1181, 1213
AluBI AGCT 9 cut(s) 31, 138, 182, 632, 755, 857, 983, 1049, 1061
AluI AGCT 9 cut(s) 31, 138, 182, 632, 755, 857, 983, 1049, 1061
Alw21I GWGCWC 2 cut(s) 361, 922
Alw26I GTCTC 3 cut(s) 323, 764, 902
Alw44I GTGCAC 1 cut(s) 918
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 1053
AoxI GGCC 2 cut(s) 130, 1331
ApaLI GTGCAC 1 cut(s) 918
ApeKI GCWGC 4 cut(s) 749, 752, 1049, 1154
ApoI RAATTY 1 cut(s) 1292
Asp700I GAANNNNTTC 2 cut(s) 1418, 1496
AspLEI GCGC 3 cut(s) 144, 782, 1154
AspS9I GGNCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
AsuHPI GGTGA 3 cut(s) 1033, 1083, 1288
AvaI CYCGRG 1 cut(s) 1053
AvaII GGWCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
BaeGI GKGCMC 1 cut(s) 922
BalI TGGCCA 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 634
Bbv12I GWGCWC 2 cut(s) 361, 922
BbvI GCAGC 4 cut(s) 736, 764, 1036, 1166
BccI CCATC 5 cut(s) 1166, 1190, 1220, 1273, 1404
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 1175
BclI TGATCA 1 cut(s) 393
BcoDI GTCTC 3 cut(s) 323, 764, 902
BfaI CTAG 4 cut(s) 684, 813, 1172, 1269
BfmI CTRYAG 2 cut(s) 750, 798
BfuAI ACCTGC 2 cut(s) 140, 559
BfuI GTATCC 1 cut(s) 1175
BisI GCNGC 4 cut(s) 750, 753, 1050, 1155
BlsI GCNGC 4 cut(s) 751, 754, 1051, 1156
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
BmeT110I CYCGRG 1 cut(s) 1053
BmgT120I GGNCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
BmiI GGNNCC 5 cut(s) 286, 297, 1012, 1128, 1306
BmrFI CCNGG 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 7 cut(s) 383, 449, 732, 736, 1089, 1120, 1474
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 1 cut(s) 634
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 216, 287
Bsc4I CCNNNNNNNGG 6 cut(s) 128, 168, 248, 293, 487, 549
Bse1I ACTGG 5 cut(s) 84, 253, 679, 796, 1334
Bse3DI GCAATG 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 395
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 216, 287
BseGI GGATG 4 cut(s) 396, 1080, 1111, 1489
BseJI GATNNNNATC 1 cut(s) 395
BseLI CCNNNNNNNGG 6 cut(s) 128, 168, 248, 293, 487, 549
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 6 cut(s) 41, 213, 374, 657, 710, 756
BseNI ACTGG 5 cut(s) 84, 253, 679, 796, 1334
BseRI GAGGAG 3 cut(s) 67, 223, 782
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 4 cut(s) 736, 764, 1036, 1166
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 2 cut(s) 132, 1333
BsiHKAI GWGCWC 2 cut(s) 361, 922
BsiHKCI CYCGRG 1 cut(s) 1053
BslFI GGGAC 1 cut(s) 1112
BslI CCNNNNNNNGG 6 cut(s) 128, 168, 248, 293, 487, 549
BsmAI GTCTC 3 cut(s) 323, 764, 902
BsmBI CGTCTC 1 cut(s) 764
BsmFI GGGAC 1 cut(s) 1112
BsmI GAATGC 2 cut(s) 870, 950
BsnI GGCC 2 cut(s) 132, 1333
BsoBI CYCGRG 1 cut(s) 1053
Bsp1286I GDGCHC 2 cut(s) 361, 922
Bsp1407I TGTACA 1 cut(s) 891
Bsp143I GATC 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 216
Bsp68I TCGCGA 1 cut(s) 876
BspANI GGCC 2 cut(s) 132, 1333
BspCNI CTCAG 6 cut(s) 42, 214, 373, 658, 711, 757
BspFNI CGCG 1 cut(s) 876
BspLI GGNNCC 5 cut(s) 286, 297, 1012, 1128, 1306
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 2 cut(s) 140, 559
BsrDI GCAATG 1 cut(s) 383
BsrGI TGTACA 1 cut(s) 891
BsrI ACTGG 5 cut(s) 84, 253, 679, 796, 1334
BssECI CCNNGG 2 cut(s) 216, 287
BssMI GATC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 627, 740
Bst6I CTCTTC 1 cut(s) 1281
BstAPI GCANNNNNTGC 3 cut(s) 155, 356, 1436
BstAUI TGTACA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 140, 1331
BstDEI CTNAG 8 cut(s) 50, 222, 360, 666, 719, 765, 1406, 1442
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 396, 1080, 1111, 1489
BstFNI CGCG 1 cut(s) 876
BstHHI GCGC 3 cut(s) 144, 782, 1154
BstKTI GATC 1 cut(s) 396
BstMAI GTCTC 3 cut(s) 323, 764, 902
BstMBI GATC 1 cut(s) 393
BstMWI GCNNNNNNNGC 7 cut(s) 155, 356, 371, 380, 1058, 1326, 1436
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 2 cut(s) 466, 1374
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 2 cut(s) 750, 798
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 876
BstV1I GCAGC 4 cut(s) 736, 764, 1036, 1166
BstV2I GAAGAC 1 cut(s) 634
BstXI CCANNNNNNTGG 1 cut(s) 281
BsuI GTATCC 1 cut(s) 1175
BsuRI GGCC 2 cut(s) 132, 1333
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 4 cut(s) 396, 1080, 1111, 1489
BtsI GCAGTG 2 cut(s) 705, 1146
BtsIMutI CAGTG 6 cut(s) 77, 246, 705, 837, 1146, 1457
BtuMI TCGCGA 1 cut(s) 876
BveI ACCTGC 2 cut(s) 140, 559
Cac8I GCNNGC 2 cut(s) 140, 1331
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 3 cut(s) 144, 782, 1154
Cfr13I GGNCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
CseI GACGC 2 cut(s) 8, 73
Csp6I GTAC 7 cut(s) 117, 494, 572, 892, 926, 1227, 1256
CviAII CATG 5 cut(s) 96, 198, 217, 463, 1371
CviQI GTAC 7 cut(s) 117, 494, 572, 892, 926, 1227, 1256
DdeI CTNAG 8 cut(s) 50, 222, 360, 666, 719, 765, 1406, 1442
DpnI GATC 1 cut(s) 395
DpnII GATC 1 cut(s) 393
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 1281
EarI CTCTTC 1 cut(s) 1281
Eco130I CCWWGG 1 cut(s) 216
Eco32I GATATC 2 cut(s) 345, 681
Eco47I GGWCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
Eco88I CYCGRG 1 cut(s) 1053
EcoO109I RGGNCCY 4 cut(s) 152, 1126, 1304, 1505
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 2 cut(s) 345, 681
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 2 cut(s) 101, 1372
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 764
FaeI CATG 5 cut(s) 99, 201, 220, 466, 1374
FaqI GGGAC 1 cut(s) 1112
FatI CATG 5 cut(s) 95, 197, 216, 462, 1370
FauNDI CATATG 2 cut(s) 485, 545
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 2 cut(s) 882, 900
Fnu4HI GCNGC 4 cut(s) 750, 753, 1050, 1155
FokI GGATG 4 cut(s) 383, 1067, 1098, 1496
Fsp4HI GCNGC 4 cut(s) 750, 753, 1050, 1155
FspBI CTAG 4 cut(s) 684, 813, 1172, 1269
FspI TGCGCA 1 cut(s) 1153
GlaI GCGC 3 cut(s) 143, 781, 1153
GluI GCNGC 4 cut(s) 750, 753, 1050, 1155
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 132, 1333
HgaI GACGC 2 cut(s) 8, 73
HhaI GCGC 3 cut(s) 144, 782, 1154
Hin1II CATG 5 cut(s) 99, 201, 220, 466, 1374
Hin6I GCGC 3 cut(s) 142, 780, 1152
HinP1I GCGC 3 cut(s) 142, 780, 1152
HincII GTYRAC 1 cut(s) 672
HindII GTYRAC 1 cut(s) 672
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 2 cut(s) 5, 1546
HphI GGTGA 3 cut(s) 1033, 1083, 1288
Hpy166II GTNNAC 5 cut(s) 119, 672, 883, 901, 920
Hpy188I TCNGA 3 cut(s) 24, 720, 1560
Hpy188III TCNNGA 5 cut(s) 9, 73, 665, 875, 1186
Hpy8I GTNNAC 5 cut(s) 119, 672, 883, 901, 920
HpyAV CCTTC 2 cut(s) 1318, 1390
HpyCH4III ACNGT 2 cut(s) 627, 740
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 356, 371, 380, 1058, 1326, 1436
HpyF3I CTNAG 8 cut(s) 50, 222, 360, 666, 719, 765, 1406, 1442
Hsp92II CATG 5 cut(s) 99, 201, 220, 466, 1374
HspAI GCGC 3 cut(s) 142, 780, 1152
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 1 cut(s) 393
LmnI GCTCC 2 cut(s) 236, 980
Lsp1109I GCAGC 4 cut(s) 736, 764, 1036, 1166
LweI GCATC 7 cut(s) 383, 449, 732, 736, 1089, 1120, 1474
MaeI CTAG 4 cut(s) 684, 813, 1172, 1269
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 395
MboI GATC 1 cut(s) 393
MboII GAAGA 4 cut(s) 184, 634, 707, 1298
MfeI CAATTG 2 cut(s) 1230, 1434
MhlI GDGCHC 2 cut(s) 361, 922
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 8 cut(s) 537, 558, 970, 1095, 1230, 1292, 1423, 1434
MluNI TGGCCA 1 cut(s) 132
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 2 cut(s) 101, 1372
MroXI GAANNNNTTC 2 cut(s) 1418, 1496
MscI TGGCCA 1 cut(s) 132
MseI TTAA 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 1049
MspR9I CCNGG 1 cut(s) 289
MunI CAATTG 2 cut(s) 1230, 1434
Mva1269I GAATGC 2 cut(s) 870, 950
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 876
MwoI GCNNNNNNNGC 7 cut(s) 155, 356, 371, 380, 1058, 1326, 1436
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 2 cut(s) 485, 545
NdeII GATC 1 cut(s) 393
NlaIII CATG 5 cut(s) 99, 201, 220, 466, 1374
NlaIV GGNNCC 5 cut(s) 286, 297, 1012, 1128, 1306
NmuCI GTSAC 1 cut(s) 184
NruI TCGCGA 1 cut(s) 876
NsbI TGCGCA 1 cut(s) 1153
NsiI ATGCAT 2 cut(s) 101, 1372
NspI RCATGY 2 cut(s) 466, 1374
PctI GAATGC 2 cut(s) 870, 950
PdmI GAANNNNTTC 2 cut(s) 1418, 1496
PfeI GAWTC 2 cut(s) 5, 1546
PflFI GACNNNGTC 1 cut(s) 625
PflMI CCANNNNNTGG 1 cut(s) 549
PkrI GCNGC 4 cut(s) 751, 754, 1051, 1156
PpuMI RGGWCCY 4 cut(s) 152, 1126, 1304, 1505
PsiI TTATAA 2 cut(s) 39, 596
Psp5II RGGWCCY 4 cut(s) 152, 1126, 1304, 1505
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 5 cut(s) 286, 297, 1012, 1128, 1306
PspPI GGNCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
PspPPI RGGWCCY 4 cut(s) 152, 1126, 1304, 1505
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 1049
RruI TCGCGA 1 cut(s) 876
RsaI GTAC 7 cut(s) 118, 495, 573, 893, 927, 1228, 1257
RsaNI GTAC 7 cut(s) 117, 494, 572, 892, 926, 1227, 1256
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 4 cut(s) 750, 753, 1050, 1155
Sau3AI GATC 1 cut(s) 393
Sau96I GGNCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
ScaI AGTACT 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 2 cut(s) 361, 922
SfaNI GCATC 7 cut(s) 383, 449, 732, 736, 1089, 1120, 1474
SfcI CTRYAG 2 cut(s) 750, 798
SinI GGWCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 8 cut(s) 537, 558, 970, 1095, 1230, 1292, 1423, 1434
SspMI CTAG 4 cut(s) 684, 813, 1172, 1269
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 627, 740
TasI AATT 8 cut(s) 537, 558, 970, 1095, 1230, 1292, 1423, 1434
TatI WGTACW 3 cut(s) 493, 891, 1226
TfiI GAWTC 2 cut(s) 5, 1546
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 6 cut(s) 84, 253, 705, 837, 1146, 1464
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 4 cut(s) 749, 752, 1049, 1154
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 84, 956
TspGWI ACGGA 2 cut(s) 288, 993
TspRI CASTG 6 cut(s) 84, 253, 705, 837, 1146, 1464
Tth111I GACNNNGTC 1 cut(s) 625
Van91I CCANNNNNTGG 1 cut(s) 549
VneI GTGCAC 1 cut(s) 918
VpaK11BI GGWCC 7 cut(s) 152, 284, 296, 794, 1126, 1304, 1505
XapI RAATTY 1 cut(s) 1292
XceI RCATGY 2 cut(s) 466, 1374
XmiI GTMKAC 2 cut(s) 882, 900
XmnI GAANNNNTTC 2 cut(s) 1418, 1496
XspI CTAG 4 cut(s) 684, 813, 1172, 1269
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 2 cut(s) 101, 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.