Rh6AG375400

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001248
Physical Location & Seq
Forward (+)
57414752 .. 57415629
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG375400.1

Sequence Viewer

Length: 714 bp
ATGCCGGATGTGGACTATTTGTACAATGTAGACAATGAGACTGCTGGTGCACTTGTACCAGCACAGATAATATACGAAGCATTCTATGGGAGGTTTCATAATTCAAACGGAGCTGTGGCTTTCCTCTGTATCATCTGGGGTTCCTACTTCTTTTGTGGGTTGTCAGTTATCACCACAGCTGCCCGAGTAGTTTATGCTCTATCAAGGGATAATGGCATCCCCTTTTCACCAATTTGGAGGAAAGTGCACCCAAGAAGCAAGGTCCCAACAAATGCAGTGTGGCTCTGCGCAGCCATCGTTATCCTGCTAGGATTACCCATCTTGAAACTTGACTTGGTATTCACAGCCATCATTTCAGTTAGTACAATTGGTTGGGTGGGTGGTTATGCAGTACCTATTTTTGCTAGGCTGGTGATGGTTGAAGAGAAATTCAAAGCAGGACCCTTCTATTTGGGCAGAGCAAGCAGGCCAGTTTGCTTTGTGGCCTTTGTGTGGATATGTTATGCATGTTCTACCTTCTTATTGCCAACTTTCTACCCTCTTAGATGGAAAACTTTCAATTATGCACCAATTGCTCTCAGTGTTGTTTTGACACTGATAATGCTTTGGTGGGTTTTGGATGCAAGGAAATGGTTCAAAGGACCTGTGAGAAACATTGATTTACCAGAGAGAAACTATGAGAATCCTCTCATTCAGACAAATGACCAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

237

Amino Acids

26.83

Weight (kDa)

9.14

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 25 - 194 1.1e-19 Amino acid permease
AA_permease PF00324 37 - 212 2.7e-10 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 289
AccI GTMKAC 1 cut(s) 30
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 4 cut(s) 23, 57, 364, 393
AfiI CCNNNNNNNGG 1 cut(s) 492
AgsI TTSAA 6 cut(s) 105, 325, 422, 433, 559, 637
AjuI GAANNNNNNNTTGG 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 113, 179
AluI AGCT 2 cut(s) 113, 179
Alw21I GWGCWC 2 cut(s) 52, 249
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 2 cut(s) 48, 245
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 467, 483
ApaLI GTGCAC 2 cut(s) 48, 245
ApeKI GCWGC 2 cut(s) 179, 290
ApoI RAATTY 1 cut(s) 428
Asp700I GAANNNNTTC 2 cut(s) 554, 632
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 262, 440, 641
AsuHPI GGTGA 3 cut(s) 163, 219, 424
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 3 cut(s) 262, 440, 641
BaeGI GKGCMC 2 cut(s) 52, 249
Bbv12I GWGCWC 2 cut(s) 52, 249
BbvI GCAGC 2 cut(s) 166, 302
BccI CCATC 5 cut(s) 302, 326, 356, 409, 540
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 308, 405
BisI GCNGC 2 cut(s) 180, 291
BlsI GCNGC 2 cut(s) 181, 292
Bme18I GGWCC 3 cut(s) 262, 440, 641
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 3 cut(s) 262, 440, 641
BmiI GGNNCC 3 cut(s) 142, 264, 442
BmsI GCATC 2 cut(s) 225, 610
Bsc4I CCNNNNNNNGG 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 470
BseGI GGATG 3 cut(s) 13, 216, 625
BseLI CCNNNNNNNGG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 592
BseNI ACTGG 1 cut(s) 470
BseSI GKGCMC 2 cut(s) 52, 249
BseXI GCAGC 2 cut(s) 166, 302
BshFI GGCC 2 cut(s) 469, 485
BsiHKAI GWGCWC 2 cut(s) 52, 249
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 492
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 2 cut(s) 469, 485
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 52, 249
Bsp1407I TGTACA 1 cut(s) 21
BspANI GGCC 2 cut(s) 469, 485
BspCNI CTCAG 1 cut(s) 591
BspLI GGNNCC 3 cut(s) 142, 264, 442
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 21
BstC8I GCNNGC 2 cut(s) 463, 467
BstDEI CTNAG 2 cut(s) 542, 578
BstF5I GGATG 3 cut(s) 13, 216, 625
BstHHI GCGC 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 462, 572
BstNSI RCATGY 1 cut(s) 510
BstSLI GKGCMC 2 cut(s) 52, 249
BstV1I GCAGC 2 cut(s) 166, 302
BsuRI GGCC 2 cut(s) 469, 485
BtsCI GGATG 3 cut(s) 13, 216, 625
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 282, 586, 593
Cac8I GCNNGC 2 cut(s) 463, 467
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 3 cut(s) 262, 440, 641
Csp6I GTAC 4 cut(s) 22, 56, 363, 392
CviAII CATG 1 cut(s) 507
CviJI RGCY 9 cut(s) 113, 119, 179, 283, 293, 347, 409, 469, 485
CviKI_1 RGCY 9 cut(s) 113, 119, 179, 283, 293, 347, 409, 469, 485
CviQI GTAC 4 cut(s) 22, 56, 363, 392
DdeI CTNAG 2 cut(s) 542, 578
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco47I GGWCC 3 cut(s) 262, 440, 641
Eco88I CYCGRG 1 cut(s) 183
EcoO109I RGGNCCY 3 cut(s) 262, 440, 641
EcoT22I ATGCAT 1 cut(s) 508
FaeI CATG 1 cut(s) 510
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 506
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 180, 291
FokI GGATG 3 cut(s) 20, 203, 632
Fsp4HI GCNGC 2 cut(s) 180, 291
FspBI CTAG 2 cut(s) 308, 405
FspI TGCGCA 1 cut(s) 289
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 180, 291
HaeIII GGCC 2 cut(s) 469, 485
HapII CCGG 1 cut(s) 5
HhaI GCGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 510
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 1 cut(s) 682
HpaII CCGG 1 cut(s) 5
HphI GGTGA 3 cut(s) 163, 219, 424
Hpy166II GTNNAC 4 cut(s) 13, 31, 50, 247
Hpy188I TCNGA 1 cut(s) 696
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 4 cut(s) 13, 31, 50, 247
HpyAV CCTTC 2 cut(s) 454, 526
HpyCH4V TGCA 7 cut(s) 50, 247, 275, 389, 506, 566, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 462, 572
HpyF3I CTNAG 2 cut(s) 542, 578
Hsp92II CATG 1 cut(s) 510
HspAI GCGC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 2 cut(s) 166, 302
LweI GCATC 2 cut(s) 225, 610
MaeI CTAG 2 cut(s) 308, 405
MboII GAAGA 1 cut(s) 434
MfeI CAATTG 2 cut(s) 366, 570
MhlI GDGCHC 2 cut(s) 52, 249
MluCI AATT 6 cut(s) 100, 231, 366, 428, 559, 570
MnlI CCTC 5 cut(s) 84, 134, 231, 549, 696
Mph1103I ATGCAT 1 cut(s) 508
MroXI GAANNNNTTC 2 cut(s) 554, 632
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 5
MunI CAATTG 2 cut(s) 366, 570
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 462, 572
NlaIII CATG 1 cut(s) 510
NlaIV GGNNCC 3 cut(s) 142, 264, 442
NsbI TGCGCA 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 508
NspI RCATGY 1 cut(s) 510
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 554, 632
PfeI GAWTC 1 cut(s) 682
PkrI GCNGC 2 cut(s) 181, 292
PpuMI RGGWCCY 3 cut(s) 262, 440, 641
Psp5II RGGWCCY 3 cut(s) 262, 440, 641
PspN4I GGNNCC 3 cut(s) 142, 264, 442
PspPI GGNCC 3 cut(s) 262, 440, 641
PspPPI RGGWCCY 3 cut(s) 262, 440, 641
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 4 cut(s) 23, 57, 364, 393
RsaNI GTAC 4 cut(s) 22, 56, 363, 392
SatI GCNGC 2 cut(s) 180, 291
Sau96I GGNCC 3 cut(s) 262, 440, 641
SduI GDGCHC 2 cut(s) 52, 249
SetI ASST 7 cut(s) 95, 115, 181, 264, 397, 518, 646
SfaNI GCATC 2 cut(s) 225, 610
SinI GGWCC 3 cut(s) 262, 440, 641
Sse9I AATT 6 cut(s) 100, 231, 366, 428, 559, 570
SspMI CTAG 2 cut(s) 308, 405
TasI AATT 6 cut(s) 100, 231, 366, 428, 559, 570
TatI WGTACW 2 cut(s) 21, 362
TfiI GAWTC 1 cut(s) 682
TscAI CASTG 3 cut(s) 282, 586, 600
TseI GCWGC 2 cut(s) 179, 290
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 3 cut(s) 282, 586, 600
VneI GTGCAC 2 cut(s) 48, 245
VpaK11BI GGWCC 3 cut(s) 262, 440, 641
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 2 cut(s) 554, 632
XspI CTAG 2 cut(s) 308, 405
Zsp2I ATGCAT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.