Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Forward (+)

57575493 .. 57578290

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGATCATCCTTATAGCCACAGGAACAAACAAGGGTGGAGGCTATTTTGCATCAAAGGAAGTTTTTTTGTGCATGTATGTAGGTCTAATCATCATATGGGCGGTACTAAACACATTTGCCCTACAAGTGATAGCATTTCTCAACATAATTTCCATATGGTGGCAGGTACTTGGTGGTTTGCTTGTGATTATAATGCTTCCTCTGGTGGCACAGACGACACAGTCAGCTTCTTATGTCTTCACACATTTTGAAACTTCTCCTGAGTTGACTGGGATATCTAGCATACCTTATGCAGTGATTTTATCAGTTCTTCTGAGCATCTACTCTCTATACGGTTTTGATGCTGCAGCTCATCTTACTGAGGAGACGAAAGGCGCAGATAGAACTGGTCCTATAGCCATTCTATCTAGTTTTGGGATTATATCAGTGCTTGGTTGGGCTTATTACATAGCTCTCACATTCAGCATCCGGGATGTGGACTATTTGTACAATGTAGACAATGAGACTGCTGGTGCACTTGTACCAGCACAGATAATATACGAAGCATTCTATGGGAGGTTTCATAATTCAAACGGAGCTGTGGCTTTCCTCTGTATCATCTGGGGCTCCTACTTCTTTTGTGGGTTGTCAGTTATCACCACAGCTGCCCGAGTAGTTTATGCTCTATCAAGGGATAATGGCATCCCCTTTTCACCAATTTGGAGGAAAGTGCACCCAAGAAGCAAGGTCCCAACAAATGCAGTGTGGCTCTGCGCAGCCATCGGTATCCTGCTAGGATTACCCATCTTGAAACTTGACTTGGTATTCACAGCCATCATTTCAGTTAGTACAATTGGTTGGGTGGGTGGTTATGCAGTACCTATTTTTGCTAGGCTGGTGATGGTTGAAGAGAAATTCAAAGCAGGACCCTTCTATTTGGGCAGAGCAAGCAGGCCAGTTTGCTTTGTGGCCTTTGTGTGGATATGTTATGCATGTTCTACCTTCTTATTGCCAACTTTCTACCCTCTTAGATGGAAAACTTTCAATTATGCACCAATTGCTCTCAGTGTTGTTTTGACACTGATAATGCTTTGGTGGGTTTTGGATGCAAGGAAATGGTTCAAAGGACCTGTGAGAAACATTGATTTACCAGAGAGAAACTATGAGAATCCTCTCATTCAGACAAATGACCAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

392

Amino Acids

43.6

Weight (kDa)

8.72

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	21 - 349	5.5e-35	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
AasI	GACNNNNNNGTC	1 cut(s)	220
Acc16I	TGCGCA	1 cut(s)	754
Acc36I	ACCTGC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	159
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	893
AfaI	GTAC	6 cut(s)	105, 168, 488, 522, 829, 858
AfiI	CCNNNNNNNGG	3 cut(s)	159, 475, 957
AgsI	TTSAA	7 cut(s)	251, 570, 790, 887, 898, 1024, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	5 cut(s)	227, 350, 452, 578, 644
AluI	AGCT	5 cut(s)	227, 350, 452, 578, 644
Alw21I	GWGCWC	2 cut(s)	517, 714
Alw26I	GTCTC	2 cut(s)	359, 497
Alw44I	GTGCAC	2 cut(s)	513, 710
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	2 cut(s)	932, 948
ApaLI	GTGCAC	2 cut(s)	513, 710
ApeKI	GCWGC	4 cut(s)	344, 347, 644, 755
ApoI	RAATTY	1 cut(s)	893
Asp700I	GAANNNNTTC	2 cut(s)	1019, 1097
AspLEI	GCGC	2 cut(s)	377, 755
AspS9I	GGNCC	4 cut(s)	389, 727, 905, 1106
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	3 cut(s)	628, 684, 889
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	4 cut(s)	389, 727, 905, 1106
BaeGI	GKGCMC	2 cut(s)	517, 714
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	517, 714
BbvI	GCAGC	4 cut(s)	331, 359, 631, 767
BccI	CCATC	5 cut(s)	767, 791, 821, 874, 1005
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	359, 497
BfaI	CTAG	4 cut(s)	279, 408, 773, 870
BfmI	CTRYAG	2 cut(s)	345, 393
BfuAI	ACCTGC	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	4 cut(s)	345, 348, 645, 756
BlsI	GCNGC	4 cut(s)	346, 349, 646, 757
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	4 cut(s)	389, 727, 905, 1106
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	4 cut(s)	389, 727, 905, 1106
BmiI	GGNNCC	3 cut(s)	607, 729, 907
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	6 cut(s)	59, 327, 331, 474, 690, 1075
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 475, 957
Bse1I	ACTGG	3 cut(s)	274, 391, 935
BseGI	GGATG	5 cut(s)	6, 465, 478, 681, 1090
BseLI	CCNNNNNNNGG	3 cut(s)	159, 475, 957
BseMII	CTCAG	4 cut(s)	252, 305, 351, 1057
BseNI	ACTGG	3 cut(s)	274, 391, 935
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	2 cut(s)	517, 714
BseXI	GCAGC	4 cut(s)	331, 359, 631, 767
BshFI	GGCC	2 cut(s)	934, 950
BsiHKAI	GWGCWC	2 cut(s)	517, 714
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	159, 475, 957
BsmAI	GTCTC	2 cut(s)	359, 497
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	713
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	934, 950
BsoBI	CYCGRG	1 cut(s)	648
Bsp1286I	GDGCHC	3 cut(s)	517, 608, 714
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	934, 950
BspCNI	CTCAG	4 cut(s)	253, 306, 352, 1056
BspLI	GGNNCC	3 cut(s)	607, 729, 907
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	274, 391, 935
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	2 cut(s)	222, 335
Bst6I	CTCTTC	1 cut(s)	882
BstAPI	GCANNNNNTGC	1 cut(s)	1037
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	928, 932
BstDEI	CTNAG	5 cut(s)	261, 314, 360, 1007, 1043
BstF5I	GGATG	5 cut(s)	6, 465, 478, 681, 1090
BstHHI	GCGC	2 cut(s)	377, 755
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	359, 497
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	927, 1037
BstNSI	RCATGY	2 cut(s)	76, 975
BstSCI	CCNGG	1 cut(s)	468
BstSFI	CTRYAG	2 cut(s)	345, 393
BstSLI	GKGCMC	2 cut(s)	517, 714
BstV1I	GCAGC	4 cut(s)	331, 359, 631, 767
BstV2I	GAAGAC	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	2 cut(s)	934, 950
BtsCI	GGATG	5 cut(s)	6, 465, 478, 681, 1090
BtsI	GCAGTG	2 cut(s)	300, 747
BtsIMutI	CAGTG	5 cut(s)	300, 432, 747, 1051, 1058
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	928, 932
CfoI	GCGC	2 cut(s)	377, 755
Cfr13I	GGNCC	4 cut(s)	389, 727, 905, 1106
Csp6I	GTAC	6 cut(s)	104, 167, 487, 521, 828, 857
CviAII	CATG	2 cut(s)	73, 972
CviQI	GTAC	6 cut(s)	104, 167, 487, 521, 828, 857
DdeI	CTNAG	5 cut(s)	261, 314, 360, 1007, 1043
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco24I	GRGCYC	1 cut(s)	608
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	4 cut(s)	389, 727, 905, 1106
Eco88I	CYCGRG	1 cut(s)	648
EcoO109I	RGGNCCY	3 cut(s)	727, 905, 1106
EcoRV	GATATC	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	973
EcoT38I	GRGCYC	1 cut(s)	608
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	76, 975
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	2 cut(s)	72, 971
FauNDI	CATATG	2 cut(s)	95, 155
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	345, 348, 645, 756
FokI	GGATG	4 cut(s)	452, 485, 668, 1097
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	4 cut(s)	345, 348, 645, 756
FspBI	CTAG	4 cut(s)	279, 408, 773, 870
FspI	TGCGCA	1 cut(s)	754
GlaI	GCGC	2 cut(s)	376, 754
GluI	GCNGC	4 cut(s)	345, 348, 645, 756
HaeIII	GGCC	2 cut(s)	934, 950
HapII	CCGG	1 cut(s)	469
HhaI	GCGC	2 cut(s)	377, 755
Hin1II	CATG	2 cut(s)	76, 975
Hin6I	GCGC	2 cut(s)	375, 753
HinP1I	GCGC	2 cut(s)	375, 753
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HinfI	GANTC	1 cut(s)	1147
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	3 cut(s)	628, 684, 889
Hpy166II	GTNNAC	5 cut(s)	267, 478, 496, 515, 712
Hpy188I	TCNGA	2 cut(s)	315, 1161
Hpy188III	TCNNGA	2 cut(s)	260, 787
Hpy8I	GTNNAC	5 cut(s)	267, 478, 496, 515, 712
HpyAV	CCTTC	2 cut(s)	919, 991
HpyCH4III	ACNGT	2 cut(s)	222, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	927, 1037
HpyF3I	CTNAG	5 cut(s)	261, 314, 360, 1007, 1043
Hsp92II	CATG	2 cut(s)	76, 975
HspAI	GCGC	2 cut(s)	375, 753
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	575, 611
Lsp1109I	GCAGC	4 cut(s)	331, 359, 631, 767
LweI	GCATC	6 cut(s)	59, 327, 331, 474, 690, 1075
MaeI	CTAG	4 cut(s)	279, 408, 773, 870
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	229, 302, 899
MfeI	CAATTG	2 cut(s)	831, 1035
MhlI	GDGCHC	3 cut(s)	517, 608, 714
MluCI	AATT	7 cut(s)	147, 565, 696, 831, 893, 1024, 1035
MnlI	CCTC	8 cut(s)	32, 210, 355, 549, 599, 696, 1014, 1161
Mph1103I	ATGCAT	1 cut(s)	973
MroXI	GAANNNNTTC	2 cut(s)	1019, 1097
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	2 cut(s)	831, 1035
Mva1269I	GAATGC	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	927, 1037
NciI	CCSGG	1 cut(s)	470
NdeI	CATATG	2 cut(s)	95, 155
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	76, 975
NlaIV	GGNNCC	3 cut(s)	607, 729, 907
NsbI	TGCGCA	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	2 cut(s)	76, 975
PctI	GAATGC	1 cut(s)	545
PdmI	GAANNNNTTC	2 cut(s)	1019, 1097
PfeI	GAWTC	1 cut(s)	1147
PflFI	GACNNNGTC	1 cut(s)	220
PflMI	CCANNNNNTGG	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	346, 349, 646, 757
PpuMI	RGGWCCY	3 cut(s)	727, 905, 1106
PsiI	TTATAA	1 cut(s)	191
Psp5II	RGGWCCY	3 cut(s)	727, 905, 1106
PspN4I	GGNNCC	3 cut(s)	607, 729, 907
PspPI	GGNCC	4 cut(s)	389, 727, 905, 1106
PspPPI	RGGWCCY	3 cut(s)	727, 905, 1106
PstI	CTGCAG	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	6 cut(s)	105, 168, 488, 522, 829, 858
RsaNI	GTAC	6 cut(s)	104, 167, 487, 521, 828, 857
SatI	GCNGC	4 cut(s)	345, 348, 645, 756
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	4 cut(s)	389, 727, 905, 1106
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	3 cut(s)	517, 608, 714
SfaNI	GCATC	6 cut(s)	59, 327, 331, 474, 690, 1075
SfcI	CTRYAG	2 cut(s)	345, 393
SinI	GGWCC	4 cut(s)	389, 727, 905, 1106
Sse9I	AATT	7 cut(s)	147, 565, 696, 831, 893, 1024, 1035
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	4 cut(s)	279, 408, 773, 870
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	222, 335
TasI	AATT	7 cut(s)	147, 565, 696, 831, 893, 1024, 1035
TatI	WGTACW	2 cut(s)	486, 827
TfiI	GAWTC	1 cut(s)	1147
TscAI	CASTG	5 cut(s)	300, 432, 747, 1051, 1065
TseI	GCWGC	4 cut(s)	344, 347, 644, 755
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	5 cut(s)	300, 432, 747, 1051, 1065
Tth111I	GACNNNGTC	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	159
VneI	GTGCAC	2 cut(s)	513, 710
VpaK11BI	GGWCC	4 cut(s)	389, 727, 905, 1106
XapI	RAATTY	1 cut(s)	893
XceI	RCATGY	2 cut(s)	76, 975
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	1019, 1097
XspI	CTAG	4 cut(s)	279, 408, 773, 870
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.