Rh6CG388900

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001248
Physical Location & Seq
Reverse (-)
57571959 .. 57574447
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG388900.1

Sequence Viewer

Length: 1167 bp
ATGTTCATTCTTATAGCCACTGGGACAAACAAGGGTGGAGGCTATTTTGCTTCAAGGAGTGTCTTTGTGTGCATGTATATGGGCATAACCCTCATTTGGGCAGTACTAAACACTTTTGCTCTGCAATTCATAGCATTGCTTAACATAATCTCCATATGGTGGCAGGTGATTGGTGGTTTGCTTGTGATTATAATGCTACCTCTGGTGGCACCGTCAACACAAACAGCTTCTTCTGTCTTCACTCATTTTGAAACATCTCCCGAGTCGACTGGGATATCTAGCGTACCTTATGCAGTGGTTTTGTCAGTGCTTCTGAGCAATTACTGTCTGTATGGATATGATGCTGCAGCTCATCTTACGGAAGAGACAAAAGGTGCAGATAAAACTGGACCTATAGCTATTCTCTCCAGTATTGGGATAATATCAGTGTTTGGTTGGGCTTATTACTTAGCTCTCACTTTCAGCATCCAGGATCTGGACTATTTATACAGTGCAGACAATGAGACTGCTGGTGTACTTGTGCCAGCACAGATAATATATGATGCATTTCATGGAAGGTATCATAATTCCACTGGAGCTGTGATTTTCCTGTTTATTATCTGGGGTTCCTTCTTCTTTTGTGGGCTGTCTGTCACCACTACTGCTGCCCGAGTAGTTTATGCTGTATCAAGGGATGGATGTATGCCTTTTTCACCAGTGTGGAGAAAAGTAAACCCGAGGAACAAGGTTCCAACAAATGCTGTGTGGCTCTGCGCTGCCATCACTATGCTTCTCGGATTACCCATCTTGAAAATGGACATAGTATTCATAGCCATCCTTTCAATTAGCACCATTGGCTGGGTGGGAGGTTATGCTGTACCAATCTTTGCTAGGCTGGTCATGGCTGAAGAGAACTTCAAACCAGGACCCTATTATTTGGGTAGAGCAAGGCGGCCAGTTTGCTTGGTGGCTTTCCTCTGGATATGTTATACCTGTTCAGTCTTCCTATTGCCGACTTCTTACCCTATTCGATGGAAAACTTTCAATTATGCACCAGTGGCCCTGGGTGTTGTTTTGACACTAGTGATGGTCTGGTGGGCGTTGGATGCTAGGAAATGGTACAAAGGACCTGTAAGAAACATTGATGTACAAAATGGAAACAATCAGCATCCGCAGTCACACCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

388

Amino Acids

42.91

Weight (kDa)

8.82

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 15 - 350 2.5e-39 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
AarI CACCTGC 1 cut(s) 154
Acc36I ACCTGC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 208
AccB7I CCANNNNNTGG 3 cut(s) 159, 475, 837
AccI GTMKAC 1 cut(s) 266
AciI CCGC 2 cut(s) 931, 1151
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 1 cut(s) 932
AcuI CTGAAG 1 cut(s) 906
AfaI GTAC 6 cut(s) 105, 285, 516, 858, 1100, 1128
AfiI CCNNNNNNNGG 6 cut(s) 96, 97, 159, 414, 475, 837
AgsI TTSAA 6 cut(s) 54, 251, 790, 822, 898, 1024
AhlI ACTAGT 1 cut(s) 1060
AjnI CCWGG 3 cut(s) 468, 901, 1041
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 5 cut(s) 227, 350, 398, 452, 578
AluI AGCT 5 cut(s) 227, 350, 398, 452, 578
Alw26I GTCTC 2 cut(s) 359, 497
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 1 cut(s) 475
Ama87I CYCGRG 3 cut(s) 260, 648, 715
AoxI GGCC 2 cut(s) 932, 1038
ApeKI GCWGC 4 cut(s) 344, 347, 644, 755
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 4 cut(s) 389, 905, 1039, 1106
AsuHPI GGTGA 3 cut(s) 178, 625, 684
AvaI CYCGRG 3 cut(s) 260, 648, 715
AvaII GGWCC 3 cut(s) 389, 905, 1106
BanI GGYRCC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 229, 973
BbvI GCAGC 4 cut(s) 331, 359, 631, 742
BccI CCATC 6 cut(s) 668, 767, 791, 821, 1005, 1060
BciT130I CCWGG 3 cut(s) 470, 903, 1043
BcoDI GTCTC 2 cut(s) 359, 497
BcuI ACTAGT 1 cut(s) 1060
BfaI CTAG 4 cut(s) 279, 870, 1061, 1089
BfmI CTRYAG 2 cut(s) 345, 393
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 5 cut(s) 345, 348, 645, 756, 932
BlsI GCNGC 5 cut(s) 346, 349, 646, 757, 933
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 470, 903, 1043
Bme18I GGWCC 3 cut(s) 389, 905, 1106
BmeT110I CYCGRG 3 cut(s) 260, 648, 715
BmgT120I GGNCC 4 cut(s) 389, 905, 1039, 1106
BmiI GGNNCC 4 cut(s) 210, 607, 729, 907
BmrFI CCNGG 3 cut(s) 470, 903, 1043
BmrI ACTGGG 2 cut(s) 30, 279
BmsI GCATC 5 cut(s) 331, 474, 532, 1075, 1156
BmuI ACTGGG 2 cut(s) 30, 279
BpiI GAAGAC 2 cut(s) 229, 973
BpmI CTGGAG 2 cut(s) 391, 594
BsaJI CCNNGG 3 cut(s) 716, 1041, 1042
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 6 cut(s) 96, 97, 159, 414, 475, 837
Bse1I ACTGG 8 cut(s) 25, 274, 391, 408, 577, 695, 935, 1034
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 3 cut(s) 470, 903, 1043
BseDI CCNNGG 3 cut(s) 716, 1041, 1042
BseGI GGATG 6 cut(s) 465, 679, 683, 813, 1090, 1147
BseLI CCNNNNNNNGG 6 cut(s) 96, 97, 159, 414, 475, 837
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 8 cut(s) 25, 274, 391, 408, 577, 695, 935, 1034
BseXI GCAGC 4 cut(s) 331, 359, 631, 742
BseYI CCCAGC 1 cut(s) 837
BsgI GTGCAG 2 cut(s) 396, 513
BshFI GGCC 2 cut(s) 934, 1040
BshNI GGYRCC 1 cut(s) 208
BsiHKCI CYCGRG 3 cut(s) 260, 648, 715
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 6 cut(s) 96, 97, 159, 414, 475, 837
BsmAI GTCTC 2 cut(s) 359, 497
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 2 cut(s) 934, 1040
BsoBI CYCGRG 3 cut(s) 260, 648, 715
Bsp1407I TGTACA 1 cut(s) 1126
Bsp143I GATC 1 cut(s) 472
BspACI CCGC 2 cut(s) 931, 1151
BspANI GGCC 2 cut(s) 934, 1040
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 4 cut(s) 210, 607, 729, 907
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 1126
BsrI ACTGG 8 cut(s) 25, 274, 391, 408, 577, 695, 935, 1034
BssECI CCNNGG 3 cut(s) 716, 1041, 1042
BssMI GATC 1 cut(s) 472
Bst2UI CCWGG 3 cut(s) 470, 903, 1043
Bst4CI ACNGT 3 cut(s) 213, 326, 491
Bst6I CTCTTC 2 cut(s) 357, 882
BstAUI TGTACA 1 cut(s) 1126
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 314, 448
BstF5I GGATG 6 cut(s) 465, 679, 683, 813, 1090, 1147
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 1 cut(s) 475
BstMAI GTCTC 2 cut(s) 359, 497
BstMBI GATC 1 cut(s) 472
BstMWI GCNNNNNNNGC 3 cut(s) 834, 1037, 1085
BstNI CCWGG 3 cut(s) 470, 903, 1043
BstNSI RCATGY 1 cut(s) 76
BstSCI CCNGG 3 cut(s) 468, 901, 1041
BstSFI CTRYAG 2 cut(s) 345, 393
BstV1I GCAGC 4 cut(s) 331, 359, 631, 742
BstV2I GAAGAC 2 cut(s) 229, 973
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 2 cut(s) 934, 1040
BtsCI GGATG 6 cut(s) 465, 679, 683, 813, 1090, 1147
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 8 cut(s) 18, 300, 312, 432, 496, 570, 702, 1041
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 1 cut(s) 475
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 4 cut(s) 389, 905, 1039, 1106
Csp6I GTAC 6 cut(s) 104, 284, 515, 857, 1099, 1127
CviAII CATG 3 cut(s) 73, 551, 880
CviQI GTAC 6 cut(s) 104, 284, 515, 857, 1099, 1127
DdeI CTNAG 2 cut(s) 314, 448
DpnI GATC 1 cut(s) 474
DpnII GATC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 932
Eam1104I CTCTTC 2 cut(s) 357, 882
EarI CTCTTC 2 cut(s) 357, 882
Eco32I GATATC 1 cut(s) 276
Eco47I GGWCC 3 cut(s) 389, 905, 1106
Eco57I CTGAAG 1 cut(s) 906
Eco88I CYCGRG 3 cut(s) 260, 648, 715
EcoO109I RGGNCCY 2 cut(s) 905, 1106
EcoRII CCWGG 3 cut(s) 468, 901, 1041
EcoRV GATATC 1 cut(s) 276
EcoT22I ATGCAT 1 cut(s) 547
FaeI CATG 3 cut(s) 76, 554, 883
FaqI GGGAC 1 cut(s) 37
FatI CATG 3 cut(s) 72, 550, 879
FauNDI CATATG 1 cut(s) 155
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 5 cut(s) 345, 348, 645, 756, 932
FokI GGATG 6 cut(s) 452, 686, 690, 800, 1097, 1134
Fsp4HI GCNGC 5 cut(s) 345, 348, 645, 756, 932
FspBI CTAG 4 cut(s) 279, 870, 1061, 1089
GlaI GCGC 1 cut(s) 754
GluI GCNGC 5 cut(s) 345, 348, 645, 756, 932
GsaI CCCAGC 1 cut(s) 841
GsuI CTGGAG 2 cut(s) 391, 594
HaeIII GGCC 2 cut(s) 934, 1040
HhaI GCGC 1 cut(s) 755
Hin1II CATG 3 cut(s) 76, 554, 883
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 2 cut(s) 216, 267
HindII GTYRAC 2 cut(s) 216, 267
HinfI GANTC 1 cut(s) 263
HphI GGTGA 3 cut(s) 178, 625, 684
Hpy166II GTNNAC 4 cut(s) 216, 267, 515, 712
Hpy188I TCNGA 2 cut(s) 315, 776
Hpy188III TCNNGA 4 cut(s) 260, 476, 787, 958
Hpy8I GTNNAC 4 cut(s) 216, 267, 515, 712
HpyAV CCTTC 2 cut(s) 549, 619
HpyCH4III ACNGT 3 cut(s) 213, 326, 491
HpyCH4V TGCA 8 cut(s) 72, 124, 293, 347, 377, 494, 545, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 834, 1037, 1085
HpyF3I CTNAG 2 cut(s) 314, 448
Hsp92II CATG 3 cut(s) 76, 554, 883
HspAI GCGC 1 cut(s) 753
Kzo9I GATC 1 cut(s) 472
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 4 cut(s) 331, 359, 631, 742
LweI GCATC 5 cut(s) 331, 474, 532, 1075, 1156
MaeI CTAG 4 cut(s) 279, 870, 1061, 1089
MaeIII GTNAC 2 cut(s) 631, 1155
MalI GATC 1 cut(s) 474
MboI GATC 1 cut(s) 472
MboII GAAGA 6 cut(s) 222, 229, 374, 604, 899, 973
MflI RGATCY 1 cut(s) 472
MluCI AATT 5 cut(s) 125, 319, 565, 822, 1024
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 2 cut(s) 755, 1062
MnlI CCTC 6 cut(s) 32, 101, 210, 711, 839, 965
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 3 cut(s) 77, 697, 764
MspR9I CCNGG 3 cut(s) 470, 903, 1043
MvaI CCWGG 3 cut(s) 470, 903, 1043
MwoI GCNNNNNNNGC 3 cut(s) 834, 1037, 1085
NdeI CATATG 1 cut(s) 155
NdeII GATC 1 cut(s) 472
NlaIII CATG 3 cut(s) 76, 554, 883
NlaIV GGNNCC 4 cut(s) 210, 607, 729, 907
NmuCI GTSAC 2 cut(s) 631, 1155
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 154
PasI CCCWGGG 1 cut(s) 1042
PdmI GAANNNNTTC 1 cut(s) 1019
PflMI CCANNNNNTGG 3 cut(s) 159, 475, 837
PfoI TCCNGGA 1 cut(s) 468
PkrI GCNGC 5 cut(s) 346, 349, 646, 757, 933
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 2 cut(s) 905, 1106
PsiI TTATAA 1 cut(s) 191
Psp5II RGGWCCY 2 cut(s) 905, 1106
Psp6I CCWGG 3 cut(s) 468, 901, 1041
PspFI CCCAGC 1 cut(s) 837
PspGI CCWGG 3 cut(s) 468, 901, 1041
PspN4I GGNNCC 4 cut(s) 210, 607, 729, 907
PspPI GGNCC 4 cut(s) 389, 905, 1039, 1106
PspPPI RGGWCCY 2 cut(s) 905, 1106
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 475
PsuI RGATCY 1 cut(s) 472
RsaI GTAC 6 cut(s) 105, 285, 516, 858, 1100, 1128
RsaNI GTAC 6 cut(s) 104, 284, 515, 857, 1099, 1127
RseI CAYNNNNRTG 3 cut(s) 77, 697, 764
SalI GTCGAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 5 cut(s) 345, 348, 645, 756, 932
Sau3AI GATC 1 cut(s) 472
Sau96I GGNCC 4 cut(s) 389, 905, 1039, 1106
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 470, 903, 1043
SfaNI GCATC 5 cut(s) 331, 474, 532, 1075, 1156
SfcI CTRYAG 2 cut(s) 345, 393
SinI GGWCC 3 cut(s) 389, 905, 1106
SmiMI CAYNNNNRTG 3 cut(s) 77, 697, 764
SpeI ACTAGT 1 cut(s) 1060
Sse9I AATT 5 cut(s) 125, 319, 565, 822, 1024
SsiI CCGC 2 cut(s) 931, 1151
SspMI CTAG 4 cut(s) 279, 870, 1061, 1089
StyD4I CCNGG 3 cut(s) 468, 901, 1041
TaaI ACNGT 3 cut(s) 213, 326, 491
TaqI TCGA 2 cut(s) 266, 1009
TasI AATT 5 cut(s) 125, 319, 565, 822, 1024
TatI WGTACW 3 cut(s) 103, 514, 1126
TauI GCSGC 1 cut(s) 934
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 8 cut(s) 25, 300, 312, 432, 496, 577, 702, 1041
TseFI GTSAC 2 cut(s) 631, 1155
TseI GCWGC 4 cut(s) 344, 347, 644, 755
Tsp45I GTSAC 2 cut(s) 631, 1155
TspDTI ATGAA 3 cut(s) 118, 539, 796
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 8 cut(s) 25, 300, 312, 432, 496, 577, 702, 1041
Van91I CCANNNNNTGG 3 cut(s) 159, 475, 837
VpaK11BI GGWCC 3 cut(s) 389, 905, 1106
XceI RCATGY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 2 cut(s) 790, 838
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 4 cut(s) 279, 870, 1061, 1089
ZrmI AGTACT 1 cut(s) 105
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.