Rh6AG375500

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001248
Physical Location & Seq
Reverse (-)
57423458 .. 57438623
15166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG375500.1

Sequence Viewer

Length: 1380 bp
ATGGATCACCAGGTTTTAGAAATGGATTCAGGAGAAAAGCGACTCAATGAGCTCGGATACAAGCAAGAATTGAGAAGGGAAATGACACTGTTCAAGACACTTGCAATAACATTTTCATGCATGTCAGTGTTCACTGGTACACCTCTCTATGGCCAAAGCTTGGGTTATGCAGGTCCTGCAACATTGATATGGGGTTGGGTAGTTGTTACATTTTTCACATGGTTTGTCGGAATCGCCATGGCTGAGATTTGCACTTCTTTCCCGACTACAGGTTCTCTTTATTTCTGGGCTGCTCATTTGGCTGGACCCAGGTGGGGCCCATTTTCTTCATGGTGCTGTGCTTGGCTCGAAGCCATCGGTTTGATATCTGCAATAGGTGCGCAGGCATTTTCCAGATCACAAACAGTACAGATGATCATTCTTATAGCCACCGGGAACAACAAGGGTGGAGGCTATTTTGCATCAAAGGGCTTAAAACTGACCTCTCTCCCTCAAATACAGGTACTCGGTGGTGTGGTTATTAGTTTCCTAACAATTATAATGCTTCCTTTGGTGGCTACTTCAACACAAACAGCTTCTTATGTCTTCACTCACTTCGAAACATCTCCTGAGTCAACTGGAATATATAGTATACCGTATGCAGTTATTTTATCAGTGCTTCTGAGCAACTACTGTCTATACGGCTATGATGCCGTAGCTCATCTTACAGAGGAGACCAAAGGCGCAGATAGAACTGGTCCGATAGCTATTTTATCTAGTATTGGGATTCAGTGGTTAGATTTGGACTATTTATATAGTACAAACAATGAGACTGCTGGTGTATCTGTGCCAGCACAGATTATATACGATGCATTCCATGGAAGGTATCAGAATTCAACTGGAGCTGTGGTTTATGCCACATCAAGGGATAAATGTATCCCATTTTCACCAATCTGGAGGAAAGTAAACCCAAGGAACAAGGTTCCAACAAATGCTGTGTGGCTTTGTGCTACCATTGGTATGCTGCTTGGATTACCTATCTTGAAAATTGAAGCAGTATTCACAGCCATTGTTTCCATTAGTACAATCGGCTGGGTGGGGGGCTATGCTGTACCGATATTTGCTAGGCTGGTGATGGCCGAAGAGAACTTCAAACCAGGACCCTTCTACTTGGGTAAAGCAAGCAGGCCAGTTTGCTTGGTGGCCTTCTTGTGGATATGCCATACCTGTTCAGTGTTCCTATTGCCGGTTACCTATCCTCTTAGGTGGAAAACTTTCAACTATGCACCAGTTGCTCTCGATGTTGCTTTGGCACTAGTAATGTTTTGGTGGGCTGTGGATGCAAGGAAATGGTTCAAAGGACCTGTAAGAAACATTGATGAAAAAAATGGAAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

459

Amino Acids

50.6

Weight (kDa)

8.69

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 30 - 257 1.9e-14 Amino acid permease
AA_permease PF00324 51 - 186 6.3e-08 Amino acid permease
AA_permease_2 PF13520 293 - 424 8.4e-16 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 539
Acc16I TGCGCA 1 cut(s) 381
Acc36I ACCTGC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 160
AccI GTMKAC 1 cut(s) 631
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 151, 1116
AcsI RAATTY 1 cut(s) 871
AfaI GTAC 6 cut(s) 139, 408, 504, 799, 1063, 1092
AfiI CCNNNNNNNGG 7 cut(s) 149, 160, 269, 314, 903, 1191, 1225
AgsI TTSAA 8 cut(s) 94, 564, 876, 1024, 1031, 1132, 1258, 1336
AhlI ACTAGT 1 cut(s) 1294
AjnI CCWGG 3 cut(s) 9, 308, 1135
AluBI AGCT 6 cut(s) 52, 159, 575, 698, 746, 884
AluI AGCT 6 cut(s) 52, 159, 575, 698, 746, 884
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 707, 803
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 176
AoxI GGCC 5 cut(s) 151, 316, 1116, 1166, 1182
ApaI GGGCCC 1 cut(s) 320
ApeKI GCWGC 2 cut(s) 290, 1003
ApoI RAATTY 1 cut(s) 871
Asp700I GAANNNNTTC 2 cut(s) 1253, 1331
AspLEI GCGC 2 cut(s) 382, 725
AspS9I GGNCC 7 cut(s) 173, 305, 316, 317, 737, 1139, 1340
AsuC2I CCSGG 1 cut(s) 433
AsuHPI GGTGA 2 cut(s) 918, 1123
AsuII TTCGAA 1 cut(s) 597
AvaII GGWCC 5 cut(s) 173, 305, 737, 1139, 1340
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 153
BanII GRGCYC 2 cut(s) 54, 320
BbsI GAAGAC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 277, 990
BccI CCATC 2 cut(s) 362, 1108
BceAI ACGGC 2 cut(s) 677, 697
BciT130I CCWGG 3 cut(s) 11, 310, 1137
BciVI GTATCC 2 cut(s) 50, 926
BclI TGATCA 1 cut(s) 414
BcnI CCSGG 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 707, 803
BcuI ACTAGT 1 cut(s) 1294
BfaI CTAG 3 cut(s) 756, 1104, 1295
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 2 cut(s) 50, 926
BisI GCNGC 2 cut(s) 291, 1004
BlsI GCNGC 2 cut(s) 292, 1005
Bme1390I CCNGG 4 cut(s) 11, 310, 433, 1137
Bme18I GGWCC 5 cut(s) 173, 305, 737, 1139, 1340
BmgT120I GGNCC 7 cut(s) 173, 305, 316, 317, 737, 1139, 1340
BmiI GGNNCC 5 cut(s) 307, 317, 318, 963, 1141
BmrFI CCNGG 4 cut(s) 11, 310, 433, 1137
BmsI GCATC 4 cut(s) 470, 679, 838, 1309
BpiI GAAGAC 1 cut(s) 577
BpmI CTGGAG 2 cut(s) 900, 955
Bpu14I TTCGAA 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 707
BsaJI CCNNGG 4 cut(s) 237, 308, 856, 950
BsaXI ACNNNNNCTCC 2 cut(s) 873, 903
Bsc4I CCNNNNNNNGG 7 cut(s) 149, 160, 269, 314, 903, 1191, 1225
Bse118I RCCGGY 1 cut(s) 1225
Bse1I ACTGG 6 cut(s) 139, 622, 739, 883, 1169, 1268
BseBI CCWGG 3 cut(s) 11, 310, 1137
BseDI CCNNGG 4 cut(s) 237, 308, 856, 950
BseGI GGATG 1 cut(s) 1324
BseLI CCNNNNNNNGG 7 cut(s) 149, 160, 269, 314, 903, 1191, 1225
BseMII CTCAG 3 cut(s) 234, 600, 653
BseNI ACTGG 6 cut(s) 139, 622, 739, 883, 1169, 1268
BseRI GAGGAG 1 cut(s) 725
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 277, 990
BseYI CCCAGC 1 cut(s) 1071
BshFI GGCC 5 cut(s) 153, 318, 1118, 1168, 1184
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 432, 1226
BslI CCNNNNNNNGG 7 cut(s) 149, 160, 269, 314, 903, 1191, 1225
BsmAI GTCTC 2 cut(s) 707, 803
BsmI GAATGC 1 cut(s) 851
BsnI GGCC 5 cut(s) 153, 318, 1118, 1168, 1184
Bso31I GGTCTC 1 cut(s) 707
Bsp119I TTCGAA 1 cut(s) 597
Bsp120I GGGCCC 1 cut(s) 316
Bsp1286I GDGCHC 2 cut(s) 54, 320
Bsp143I GATC 3 cut(s) 4, 395, 414
Bsp19I CCATGG 2 cut(s) 237, 856
BspANI GGCC 5 cut(s) 153, 318, 1118, 1168, 1184
BspCNI CTCAG 3 cut(s) 235, 601, 654
BspLI GGNNCC 5 cut(s) 307, 317, 318, 963, 1141
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 707
BsrFI RCCGGY 1 cut(s) 1225
BsrI ACTGG 6 cut(s) 139, 622, 739, 883, 1169, 1268
BssAI RCCGGY 1 cut(s) 1225
BssECI CCNNGG 4 cut(s) 237, 308, 856, 950
BssMI GATC 3 cut(s) 4, 395, 414
BssNAI GTATAC 1 cut(s) 632
BssT1I CCWWGG 3 cut(s) 237, 856, 950
Bst1107I GTATAC 1 cut(s) 632
Bst2UI CCWGG 3 cut(s) 11, 310, 1137
Bst4CI ACNGT 4 cut(s) 90, 406, 636, 674
Bst6I CTCTTC 1 cut(s) 1116
BstAPI GCANNNNNTGC 3 cut(s) 176, 377, 1271
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 4 cut(s) 384, 831, 1162, 1166
BstDEI CTNAG 4 cut(s) 243, 609, 662, 1241
BstDSI CCRYGG 2 cut(s) 237, 856
BstEII GGTNACC 1 cut(s) 1228
BstF5I GGATG 1 cut(s) 1324
BstHHI GCGC 2 cut(s) 382, 725
BstKTI GATC 3 cut(s) 7, 398, 417
BstMAI GTCTC 2 cut(s) 707, 803
BstMBI GATC 3 cut(s) 4, 395, 414
BstMWI GCNNNNNNNGC 5 cut(s) 176, 299, 377, 1271, 1319
BstNI CCWGG 3 cut(s) 11, 310, 1137
BstNSI RCATGY 1 cut(s) 124
BstPI GGTNACC 1 cut(s) 1228
BstSCI CCNGG 4 cut(s) 9, 308, 431, 1135
BstSFI CTRYAG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 2 cut(s) 277, 990
BstV2I GAAGAC 1 cut(s) 577
BstZ17I GTATAC 1 cut(s) 632
BsuI GTATCC 2 cut(s) 50, 926
BsuRI GGCC 5 cut(s) 153, 318, 1118, 1168, 1184
BtgI CCRYGG 2 cut(s) 237, 856
BtsCI GGATG 1 cut(s) 1324
BtsIMutI CAGTG 6 cut(s) 86, 132, 132, 660, 776, 1218
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 4 cut(s) 384, 831, 1162, 1166
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 2 cut(s) 382, 725
Cfr10I RCCGGY 1 cut(s) 1225
Cfr13I GGNCC 7 cut(s) 173, 305, 316, 317, 737, 1139, 1340
CsiI ACCWGGT 1 cut(s) 9
Csp6I GTAC 6 cut(s) 138, 407, 503, 798, 1062, 1091
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 6 cut(s) 117, 121, 219, 238, 330, 857
CviQI GTAC 6 cut(s) 138, 407, 503, 798, 1062, 1091
DdeI CTNAG 4 cut(s) 243, 609, 662, 1241
DpnI GATC 3 cut(s) 6, 397, 416
DpnII GATC 3 cut(s) 4, 395, 414
EaeI YGGCCR 2 cut(s) 151, 1116
Eam1104I CTCTTC 1 cut(s) 1116
EarI CTCTTC 1 cut(s) 1116
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 3 cut(s) 237, 856, 950
Eco24I GRGCYC 2 cut(s) 54, 320
Eco31I GGTCTC 1 cut(s) 707
Eco32I GATATC 1 cut(s) 366
Eco47I GGWCC 5 cut(s) 173, 305, 737, 1139, 1340
Eco53kI GAGCTC 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 1228
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 4 cut(s) 173, 316, 1139, 1340
EcoO65I GGTNACC 1 cut(s) 1228
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 3 cut(s) 9, 308, 1135
EcoRV GATATC 1 cut(s) 366
EcoT14I CCWWGG 3 cut(s) 237, 856, 950
EcoT22I ATGCAT 2 cut(s) 122, 853
EcoT38I GRGCYC 2 cut(s) 54, 320
ErhI CCWWGG 3 cut(s) 237, 856, 950
FaeI CATG 6 cut(s) 120, 124, 222, 241, 333, 860
FatI CATG 6 cut(s) 116, 120, 218, 237, 329, 856
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 1 cut(s) 631
Fnu4HI GCNGC 2 cut(s) 291, 1004
FokI GGATG 1 cut(s) 1331
FriOI GRGCYC 2 cut(s) 54, 320
Fsp4HI GCNGC 2 cut(s) 291, 1004
FspBI CTAG 3 cut(s) 756, 1104, 1295
FspI TGCGCA 1 cut(s) 381
GlaI GCGC 2 cut(s) 381, 724
GluI GCNGC 2 cut(s) 291, 1004
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 2 cut(s) 900, 955
HaeIII GGCC 5 cut(s) 153, 318, 1118, 1168, 1184
HapII CCGG 2 cut(s) 432, 1226
HhaI GCGC 2 cut(s) 382, 725
Hin1II CATG 6 cut(s) 120, 124, 222, 241, 333, 860
Hin6I GCGC 2 cut(s) 380, 723
HinP1I GCGC 2 cut(s) 380, 723
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 5 cut(s) 26, 42, 231, 611, 766
HpaII CCGG 2 cut(s) 432, 1226
HphI GGTGA 2 cut(s) 918, 1123
Hpy166II GTNNAC 5 cut(s) 132, 140, 615, 632, 946
Hpy188I TCNGA 5 cut(s) 56, 230, 663, 741, 870
Hpy188III TCNNGA 8 cut(s) 30, 94, 262, 393, 608, 934, 1021, 1277
Hpy8I GTNNAC 5 cut(s) 132, 140, 615, 632, 946
HpyAV CCTTC 4 cut(s) 69, 855, 1153, 1195
HpyCH4III ACNGT 4 cut(s) 90, 406, 636, 674
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 299, 377, 1271, 1319
HpyF3I CTNAG 4 cut(s) 243, 609, 662, 1241
Hsp92II CATG 6 cut(s) 120, 124, 222, 241, 333, 860
HspAI GCGC 2 cut(s) 380, 723
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 3 cut(s) 4, 395, 414
LmnI GCTCC 1 cut(s) 881
Lsp1109I GCAGC 2 cut(s) 277, 990
LweI GCATC 4 cut(s) 470, 679, 838, 1309
MabI ACCWGGT 1 cut(s) 9
MaeI CTAG 3 cut(s) 756, 1104, 1295
MaeIII GTNAC 2 cut(s) 205, 1228
MalI GATC 3 cut(s) 6, 397, 416
MboI GATC 3 cut(s) 4, 395, 414
MboII GAAGA 3 cut(s) 318, 577, 1133
MhlI GDGCHC 2 cut(s) 54, 320
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 4 cut(s) 68, 534, 871, 1026
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 2 cut(s) 36, 620
MmeI TCCRAC 2 cut(s) 208, 989
MnlI CCTC 7 cut(s) 153, 443, 493, 501, 703, 930, 1248
Mox20I TGGCCA 1 cut(s) 153
Mph1103I ATGCAT 2 cut(s) 122, 853
MroXI GAANNNNTTC 2 cut(s) 1253, 1331
MscI TGGCCA 1 cut(s) 153
MseI TTAA 1 cut(s) 473
MslI CAYNNNNRTG 4 cut(s) 115, 125, 187, 998
Msp20I TGGCCA 1 cut(s) 153
MspI CCGG 2 cut(s) 432, 1226
MspR9I CCNGG 4 cut(s) 11, 310, 433, 1137
Mva1269I GAATGC 1 cut(s) 851
MvaI CCWGG 3 cut(s) 11, 310, 1137
MwoI GCNNNNNNNGC 5 cut(s) 176, 299, 377, 1271, 1319
NciI CCSGG 1 cut(s) 433
NcoI CCATGG 2 cut(s) 237, 856
NdeII GATC 3 cut(s) 4, 395, 414
NlaIII CATG 6 cut(s) 120, 124, 222, 241, 333, 860
NlaIV GGNNCC 5 cut(s) 307, 317, 318, 963, 1141
NsbI TGCGCA 1 cut(s) 381
NsiI ATGCAT 2 cut(s) 122, 853
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 1 cut(s) 597
PctI GAATGC 1 cut(s) 851
PdmI GAANNNNTTC 2 cut(s) 1253, 1331
PfeI GAWTC 3 cut(s) 26, 231, 766
PflMI CCANNNNNTGG 1 cut(s) 160
PkrI GCNGC 2 cut(s) 292, 1005
PleI GAGTC 2 cut(s) 36, 619
PpsI GAGTC 2 cut(s) 36, 619
PpuMI RGGWCCY 3 cut(s) 173, 1139, 1340
PsiI TTATAA 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 3 cut(s) 173, 1139, 1340
Psp6I CCWGG 3 cut(s) 9, 308, 1135
PspEI GGTNACC 1 cut(s) 1228
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 3 cut(s) 9, 308, 1135
PspN4I GGNNCC 5 cut(s) 307, 317, 318, 963, 1141
PspOMI GGGCCC 1 cut(s) 316
PspPI GGNCC 7 cut(s) 173, 305, 316, 317, 737, 1139, 1340
PspPPI RGGWCCY 3 cut(s) 173, 1139, 1340
PstNI CAGNNNCTG 1 cut(s) 176
RsaI GTAC 6 cut(s) 139, 408, 504, 799, 1063, 1092
RsaNI GTAC 6 cut(s) 138, 407, 503, 798, 1062, 1091
RseI CAYNNNNRTG 4 cut(s) 115, 125, 187, 998
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 473
SatI GCNGC 2 cut(s) 291, 1004
Sau3AI GATC 3 cut(s) 4, 395, 414
Sau96I GGNCC 7 cut(s) 173, 305, 316, 317, 737, 1139, 1340
SchI GAGTC 2 cut(s) 36, 620
ScrFI CCNGG 4 cut(s) 11, 310, 433, 1137
SduI GDGCHC 2 cut(s) 54, 320
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 4 cut(s) 470, 679, 838, 1309
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 597
SinI GGWCC 5 cut(s) 173, 305, 737, 1139, 1340
SmiMI CAYNNNNRTG 4 cut(s) 115, 125, 187, 998
SpeI ACTAGT 1 cut(s) 1294
Sse9I AATT 4 cut(s) 68, 534, 871, 1026
SspMI CTAG 3 cut(s) 756, 1104, 1295
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 4 cut(s) 9, 308, 431, 1135
StyI CCWWGG 3 cut(s) 237, 856, 950
TaaI ACNGT 4 cut(s) 90, 406, 636, 674
TaqI TCGA 3 cut(s) 348, 597, 1278
TasI AATT 4 cut(s) 68, 534, 871, 1026
TatI WGTACW 3 cut(s) 406, 797, 1061
TfiI GAWTC 3 cut(s) 26, 231, 766
Tru1I TTAA 1 cut(s) 473
Tru9I TTAA 1 cut(s) 473
TscAI CASTG 6 cut(s) 93, 132, 139, 660, 776, 1218
TseI GCWGC 2 cut(s) 290, 1003
TspDTI ATGAA 3 cut(s) 105, 318, 1374
TspRI CASTG 6 cut(s) 93, 132, 139, 660, 776, 1218
Van91I CCANNNNNTGG 1 cut(s) 160
VpaK11BI GGWCC 5 cut(s) 173, 305, 737, 1139, 1340
XapI RAATTY 1 cut(s) 871
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 631
XmnI GAANNNNTTC 2 cut(s) 1253, 1331
XspI CTAG 3 cut(s) 756, 1104, 1295
Zsp2I ATGCAT 2 cut(s) 122, 853
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.