RchiOBHm_Chr6g0296651

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001248
Physical Location & Seq
Reverse (-)
58404749 .. 58407133
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26627

Sequence Viewer

Length: 1233 bp
ATGGATCAACAGGTTTTAGAAATGGATTCAGGAGAAAAGCGACTCAATGAGCTTGGATACAAGCAAGAATTGAGAAGGGAAATGACACTTGCAATAACATTTTCATGCATGTCAGTGTTCACTGGTACACCTCTCTATGGCCAAAGCTTGGGTTATGCAGGTCCTGCAACATTGATATGGGGTTGGTTAGTTGTTACATTTTTCACATGGTTTGTCGGAATCGCCATGGCTGAGATTTTCTCTTCTTTCCCGACTACAGGTTCCCTTTATTTCTGGGCTGCTCATTTGGCTGGACCCAGGTGGGGTCCATTTGCTTCATGGTGCTGTGCTTGGCTCGAAGCCATCGGTTTGATATCTGCAATAGGTGCTCAGGCATTTTCCGGATCACAAACATTACAGATGATCATTCTTATAGCCACAGGGAACAACAAGGGTGGAGGCTATTTTGCATCAAAGGGTGTGTTTTTGTGCATGTATTTGGGTCTAATCATCATTTGGGCAATACTAAACTCCTTTGCATTACAAGTGATAGCAATTCTCAACATAATCTCCATATGGTGGCAGTCAACTGGAATATCTAGTATACCGTATGCAGTTATTTTATCAGTGCTTCTGAGCAACTACTGTCTATACGGCTGTGATGCTGCAGCTCATCTCAGAGAGGAGACCAAAGGCGCAGATAGAACAGGTCCGATAGCTATTTTATCTAGTATTGGGATTGTATCAGTGGTTAGTTGGGCTTATTACTTAGCTCTCACTTTCAGCATAAGGATTATATACGATGCATTCCATGGAAGGTATCAGAATTCAACTGGAGCTGTGGTATTTCTATGCATTATATGGGGTTCCTTTTTCTTTTGTGGGCTGTCTGTTGTTTATGCCATATCAAGAGATAAATGTATCCCATTTTCACCAATCTGGAGGAAAGTAAACCCGAGGAACAAGGTTCCAACAAATGCTGTGTGGCTTTGTGCTACCATTGGTATGCTGCTTGGATTACCTATCTTGAAAATTGAAGCAGTAATCACAGCCATTGTTTCCATTAGTACAATCGGCTGGGTGGGCGGCTATGCTGTACCGATATTTGCTAGGCTGGTGATGGCTGAAGAGAACTTCAAACCAGGACCCTTCTACTTGGGTAGAGCAAGCAGGCCGGTTTGCTTGGTGGCCTTCTTGTGGATATGCTATACCTGTTCAGTGTTCCTATTGCCGGTTAATTACCTACCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

410

Amino Acids

45.07

Weight (kDa)

8.63

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 31 - 186 1.1e-09 Amino acid permease
AA_permease PF00324 47 - 122 2.7e-09 Amino acid permease
AA_permease_2 PF13520 195 - 406 5e-17 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 149
AccB7I CCANNNNNTGG 2 cut(s) 148, 558
AccI GTMKAC 1 cut(s) 583
AccIII TCCGGA 1 cut(s) 380
AciI CCGC 1 cut(s) 1065
AclWI GGATC 2 cut(s) 12, 391
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 805
AcuI CTGAAG 1 cut(s) 1125
AfaI GTAC 3 cut(s) 127, 1048, 1077
AfiI CCNNNNNNNGG 7 cut(s) 137, 148, 257, 302, 558, 1176, 1210
AgsI TTSAA 4 cut(s) 810, 1009, 1016, 1117
AjnI CCWGG 2 cut(s) 296, 1120
AluBI AGCT 6 cut(s) 52, 147, 650, 698, 752, 818
AluI AGCT 6 cut(s) 52, 147, 650, 698, 752, 818
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 2 cut(s) 12, 391
AlwNI CAGNNNCTG 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 934
Aor13HI TCCGGA 1 cut(s) 380
AoxI GGCC 3 cut(s) 139, 1151, 1167
ApeKI GCWGC 4 cut(s) 278, 644, 647, 988
ApoI RAATTY 1 cut(s) 805
AspLEI GCGC 1 cut(s) 677
AspS9I GGNCC 5 cut(s) 161, 293, 305, 689, 1124
AsuHPI GGTGA 2 cut(s) 903, 1108
AvaI CYCGRG 1 cut(s) 934
AvaII GGWCC 5 cut(s) 161, 293, 305, 689, 1124
BalI TGGCCA 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 265, 631, 659, 975
BccI CCATC 2 cut(s) 350, 1093
BceAI ACGGC 1 cut(s) 649
BciT130I CCWGG 2 cut(s) 298, 1122
BciVI GTATCC 2 cut(s) 50, 911
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 3 cut(s) 579, 708, 1089
BfmI CTRYAG 2 cut(s) 255, 645
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 2 cut(s) 50, 911
BisI GCNGC 5 cut(s) 279, 645, 648, 989, 1066
BlsI GCNGC 5 cut(s) 280, 646, 649, 990, 1067
Bme1390I CCNGG 2 cut(s) 298, 1122
Bme18I GGWCC 5 cut(s) 161, 293, 305, 689, 1124
BmeT110I CYCGRG 1 cut(s) 934
BmgT120I GGNCC 5 cut(s) 161, 293, 305, 689, 1124
BmiI GGNNCC 6 cut(s) 262, 295, 306, 847, 948, 1126
BmrFI CCNGG 2 cut(s) 298, 1122
BmsI GCATC 3 cut(s) 458, 631, 772
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 2 cut(s) 834, 940
Bpu10I CCTNAGC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 225, 296, 790, 935
BsaWI WCCGGW 1 cut(s) 380
BsaXI ACNNNNNCTCC 4 cut(s) 533, 563, 807, 837
Bsc4I CCNNNNNNNGG 7 cut(s) 137, 148, 257, 302, 558, 1176, 1210
Bse118I RCCGGY 2 cut(s) 1153, 1210
Bse1I ACTGG 3 cut(s) 127, 574, 817
BseAI TCCGGA 1 cut(s) 380
BseBI CCWGG 2 cut(s) 298, 1122
BseDI CCNNGG 4 cut(s) 225, 296, 790, 935
BseLI CCNNNNNNNGG 7 cut(s) 137, 148, 257, 302, 558, 1176, 1210
BseMII CTCAG 4 cut(s) 222, 383, 605, 670
BseNI ACTGG 3 cut(s) 127, 574, 817
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 4 cut(s) 265, 631, 659, 975
BseYI CCCAGC 1 cut(s) 1056
BshFI GGCC 3 cut(s) 141, 1153, 1169
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 934
BsiSI CCGG 3 cut(s) 381, 1154, 1211
BslI CCNNNNNNNGG 7 cut(s) 137, 148, 257, 302, 558, 1176, 1210
BsmAI GTCTC 1 cut(s) 659
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 3 cut(s) 141, 1153, 1169
Bso31I GGTCTC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 934
Bsp1286I GDGCHC 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 380
Bsp143I GATC 3 cut(s) 4, 383, 402
Bsp19I CCATGG 2 cut(s) 225, 790
BspACI CCGC 1 cut(s) 1065
BspANI GGCC 3 cut(s) 141, 1153, 1169
BspCNI CTCAG 4 cut(s) 223, 382, 606, 669
BspEI TCCGGA 1 cut(s) 380
BspLI GGNNCC 6 cut(s) 262, 295, 306, 847, 948, 1126
BspMAI CTGCAG 1 cut(s) 649
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 12, 391
BspTNI GGTCTC 1 cut(s) 659
BsrFI RCCGGY 2 cut(s) 1153, 1210
BsrI ACTGG 3 cut(s) 127, 574, 817
BssAI RCCGGY 2 cut(s) 1153, 1210
BssECI CCNNGG 4 cut(s) 225, 296, 790, 935
BssMI GATC 3 cut(s) 4, 383, 402
BssNAI GTATAC 1 cut(s) 584
BssT1I CCWWGG 2 cut(s) 225, 790
Bst1107I GTATAC 1 cut(s) 584
Bst2UI CCWGG 2 cut(s) 298, 1122
Bst4CI ACNGT 2 cut(s) 588, 626
Bst6I CTCTTC 2 cut(s) 247, 1101
BstAPI GCANNNNNTGC 2 cut(s) 164, 365
BstC8I GCNNGC 2 cut(s) 1147, 1151
BstDEI CTNAG 6 cut(s) 231, 369, 614, 656, 748, 1230
BstDSI CCRYGG 2 cut(s) 225, 790
BstHHI GCGC 1 cut(s) 677
BstKTI GATC 3 cut(s) 7, 386, 405
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 3 cut(s) 4, 383, 402
BstMWI GCNNNNNNNGC 4 cut(s) 164, 287, 365, 1062
BstNI CCWGG 2 cut(s) 298, 1122
BstNSI RCATGY 2 cut(s) 112, 475
BstSCI CCNGG 2 cut(s) 296, 1120
BstSFI CTRYAG 2 cut(s) 255, 645
BstV1I GCAGC 4 cut(s) 265, 631, 659, 975
BstZ17I GTATAC 1 cut(s) 584
BsuI GTATCC 2 cut(s) 50, 911
BsuRI GGCC 3 cut(s) 141, 1153, 1169
BtgI CCRYGG 2 cut(s) 225, 790
BtsIMutI CAGTG 5 cut(s) 120, 120, 612, 732, 1203
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 1147, 1151
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 677
Cfr10I RCCGGY 2 cut(s) 1153, 1210
Cfr13I GGNCC 5 cut(s) 161, 293, 305, 689, 1124
Csp6I GTAC 3 cut(s) 126, 1047, 1076
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 7 cut(s) 105, 109, 207, 226, 318, 472, 791
CviQI GTAC 3 cut(s) 126, 1047, 1076
DdeI CTNAG 6 cut(s) 231, 369, 614, 656, 748, 1230
DpnI GATC 3 cut(s) 6, 385, 404
DpnII GATC 3 cut(s) 4, 383, 402
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 2 cut(s) 247, 1101
EarI CTCTTC 2 cut(s) 247, 1101
Eco130I CCWWGG 2 cut(s) 225, 790
Eco31I GGTCTC 1 cut(s) 659
Eco32I GATATC 1 cut(s) 354
Eco47I GGWCC 5 cut(s) 161, 293, 305, 689, 1124
Eco57I CTGAAG 1 cut(s) 1125
Eco88I CYCGRG 1 cut(s) 934
EcoO109I RGGNCCY 2 cut(s) 161, 1124
EcoRI GAATTC 1 cut(s) 805
EcoRII CCWGG 2 cut(s) 296, 1120
EcoRV GATATC 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 225, 790
EcoT22I ATGCAT 3 cut(s) 110, 787, 836
ErhI CCWWGG 2 cut(s) 225, 790
FaeI CATG 7 cut(s) 108, 112, 210, 229, 321, 475, 794
FatI CATG 7 cut(s) 104, 108, 206, 225, 317, 471, 790
FauNDI CATATG 1 cut(s) 554
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 279, 645, 648, 989, 1066
Fsp4HI GCNGC 5 cut(s) 279, 645, 648, 989, 1066
FspBI CTAG 3 cut(s) 579, 708, 1089
GlaI GCGC 1 cut(s) 676
GluI GCNGC 5 cut(s) 279, 645, 648, 989, 1066
GsaI CCCAGC 1 cut(s) 1060
GsuI CTGGAG 2 cut(s) 834, 940
HaeIII GGCC 3 cut(s) 141, 1153, 1169
HapII CCGG 3 cut(s) 381, 1154, 1211
HhaI GCGC 1 cut(s) 677
Hin1II CATG 7 cut(s) 108, 112, 210, 229, 321, 475, 794
Hin6I GCGC 1 cut(s) 675
HinP1I GCGC 1 cut(s) 675
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 3 cut(s) 26, 42, 219
HpaII CCGG 3 cut(s) 381, 1154, 1211
HphI GGTGA 2 cut(s) 903, 1108
Hpy166II GTNNAC 5 cut(s) 120, 128, 567, 584, 931
Hpy188I TCNGA 5 cut(s) 218, 615, 659, 693, 804
Hpy188III TCNNGA 6 cut(s) 30, 250, 381, 888, 919, 1006
Hpy8I GTNNAC 5 cut(s) 120, 128, 567, 584, 931
HpyAV CCTTC 4 cut(s) 69, 789, 1138, 1180
HpyCH4III ACNGT 2 cut(s) 588, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 287, 365, 1062
HpyF3I CTNAG 6 cut(s) 231, 369, 614, 656, 748, 1230
Hsp92II CATG 7 cut(s) 108, 112, 210, 229, 321, 475, 794
HspAI GCGC 1 cut(s) 675
Kpn2I TCCGGA 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 3 cut(s) 4, 383, 402
LmnI GCTCC 1 cut(s) 815
Lsp1109I GCAGC 4 cut(s) 265, 631, 659, 975
LweI GCATC 3 cut(s) 458, 631, 772
MaeI CTAG 3 cut(s) 579, 708, 1089
MaeIII GTNAC 1 cut(s) 193
MalI GATC 3 cut(s) 6, 385, 404
MboI GATC 3 cut(s) 4, 383, 402
MboII GAAGA 2 cut(s) 234, 1118
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 5 cut(s) 68, 534, 805, 1011, 1216
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 2 cut(s) 196, 974
MnlI CCTC 5 cut(s) 141, 431, 655, 915, 930
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 3 cut(s) 110, 787, 836
MroI TCCGGA 1 cut(s) 380
MscI TGGCCA 1 cut(s) 141
MseI TTAA 1 cut(s) 1215
MslI CAYNNNNRTG 4 cut(s) 103, 113, 175, 983
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 3 cut(s) 381, 1154, 1211
MspR9I CCNGG 2 cut(s) 298, 1122
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 2 cut(s) 298, 1122
MwoI GCNNNNNNNGC 4 cut(s) 164, 287, 365, 1062
NcoI CCATGG 2 cut(s) 225, 790
NdeI CATATG 1 cut(s) 554
NdeII GATC 3 cut(s) 4, 383, 402
NlaIII CATG 7 cut(s) 108, 112, 210, 229, 321, 475, 794
NlaIV GGNNCC 6 cut(s) 262, 295, 306, 847, 948, 1126
NsiI ATGCAT 3 cut(s) 110, 787, 836
NspI RCATGY 2 cut(s) 112, 475
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 2 cut(s) 26, 219
PflMI CCANNNNNTGG 2 cut(s) 148, 558
PkrI GCNGC 5 cut(s) 280, 646, 649, 990, 1067
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PpuMI RGGWCCY 2 cut(s) 161, 1124
Psp5II RGGWCCY 2 cut(s) 161, 1124
Psp6I CCWGG 2 cut(s) 296, 1120
PspFI CCCAGC 1 cut(s) 1056
PspGI CCWGG 2 cut(s) 296, 1120
PspN4I GGNNCC 6 cut(s) 262, 295, 306, 847, 948, 1126
PspPI GGNCC 5 cut(s) 161, 293, 305, 689, 1124
PspPPI RGGWCCY 2 cut(s) 161, 1124
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 1 cut(s) 164
RsaI GTAC 3 cut(s) 127, 1048, 1077
RsaNI GTAC 3 cut(s) 126, 1047, 1076
RseI CAYNNNNRTG 4 cut(s) 103, 113, 175, 983
SaqAI TTAA 1 cut(s) 1215
SatI GCNGC 5 cut(s) 279, 645, 648, 989, 1066
Sau3AI GATC 3 cut(s) 4, 383, 402
Sau96I GGNCC 5 cut(s) 161, 293, 305, 689, 1124
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 298, 1122
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 3 cut(s) 458, 631, 772
SfcI CTRYAG 2 cut(s) 255, 645
SinI GGWCC 5 cut(s) 161, 293, 305, 689, 1124
SmiMI CAYNNNNRTG 4 cut(s) 103, 113, 175, 983
Sse9I AATT 5 cut(s) 68, 534, 805, 1011, 1216
SsiI CCGC 1 cut(s) 1065
SspMI CTAG 3 cut(s) 579, 708, 1089
StyD4I CCNGG 2 cut(s) 296, 1120
StyI CCWWGG 2 cut(s) 225, 790
TaaI ACNGT 2 cut(s) 588, 626
TaqI TCGA 1 cut(s) 336
TasI AATT 5 cut(s) 68, 534, 805, 1011, 1216
TatI WGTACW 1 cut(s) 1046
TauI GCSGC 1 cut(s) 1068
TfiI GAWTC 2 cut(s) 26, 219
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TscAI CASTG 5 cut(s) 120, 127, 612, 732, 1203
TseI GCWGC 4 cut(s) 278, 644, 647, 988
TspDTI ATGAA 2 cut(s) 93, 306
TspRI CASTG 5 cut(s) 120, 127, 612, 732, 1203
Van91I CCANNNNNTGG 2 cut(s) 148, 558
VpaK11BI GGWCC 5 cut(s) 161, 293, 305, 689, 1124
XapI RAATTY 1 cut(s) 805
XceI RCATGY 2 cut(s) 112, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 583
XspI CTAG 3 cut(s) 579, 708, 1089
Zsp2I ATGCAT 3 cut(s) 110, 787, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.