Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Reverse (-)

31996379 .. 32015213

Gene Structure 18835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGGACAGAACCAAGTAGATACATCACAAATCCGAGAGATGGATTCAGGGGAAAAGCGACTTAATGAGCTTGGTTACAAGCAAGAACTCAGAAGAGAGATGACTTTGTTCAAAACTCTTGCAATATCATTTTCGACGATGACACTCTTCACCGGAATCACTCCTTTGTATGGTTCTAGCCTTGTATATGCAGGTCCTGCAAGCCTTGTGTGGGGCTGGGTGGTAGTATCATTTTTCACCTGGTTTGTTGGACTTGCCATGGCAGAGATCTGCTCTTCTTTCCCGACCACAGGTTCTCTTTACTTCTGGGCTGCTCACTTAGCTGGCCCCAAATGGGGTCCCCTTGCATCATGGTGTTGTGCTTGGCTTGAGACCATAGGGCTCATTGCTGGCATAGGTACTCAGGCATATGCAGGATCTCAAACACTGCAAAGTATCATTTTACTATGCACTGGGACAAATAAAGGTGGAGGGTATTTTGCACCAAAGTGGTTGTTCTTATGCATGTACATCGGCCTCACTCTTATATGGGCGTTTCTCAACACATTTGCGTTAGAAGTGATTGCCTTTATTGATATAATATCCATATGGTGGCAGGTCGTTGGAGGGACGGTTATTGTTATAATGCTTCCCCTTGTAGCACTTACTACACAGTCTGCATCATACGTGTTCACAAACTTCGATGTGGCCCCTGAGGTGACGGGAATATCAAGCAAGCCTTATGCAGTGATTCTATCCTTTCTTGTTAGTCAGTATTCATTATATGGATATGATGCTGCAGCACATCTAACAGAAGAAACCAGAGGAGCAGACAAGAATGGTCCTATTGCTATTCTAACAAGCATCGGTATCATTTCAGTATTTGGATGGGCATACATCTTGGCCCTGACTTTCAGCATTCAGGATTTTAGCTACCTATATGATCCCACCAATGAGACTAAAGGAGCATTTGTGCCTGCTCAAATTCTCTATGATGCATTTCATGGGAGGTATCATAGTTCCACTGGAGCAATCATTTTACTATTTATCATTTGGGGTTCATTCTTCTTTGGTGGACTTTCAATTACCACCAGTGCTGCCAGAGTAGTGTATGCTCTATCAAGAGACCAAGGGATTCCATTCTCGTCTGTATGGCGAAAAATTCACCCAAAACACAAAGTTCCTTCCAACGCAGTGTGGCTCTGTGCAGCCATCTGCATTCTCCTGGGACTTCCAATCTTGAAAGTTAATGTAGTATTCACGGCCATAACTTCCATATGTACAATTGGATGGGTAGGAGGTTATGCAGTTCCGATCTTTGCAAGAATGGTAATGCCTGAGAAGAAGTTCAACCCCGGGCCATTTTATTTGGGCAATTTAAGCAGACCGATTTGCTTGGTCGCCTTCCTTTGGATTTGTTACACTTGTTCTGTCTTCCTCCTCCCTACTTACTACCCAATTAGCTGGAGTACATTCAATTATGCACCTGTTGCTTTGAGTGTGGGCTTAGGTCTGATAATGCTTTGGTGGGTGTTGGATGCAAGGAAGTGGTTCAAAGGACCTGTTAGAAACATTGAAACTGAACATAATGGAAAGGCACTGATGGCAATGCCTGCTCCCAATTTCAACTTTTGTCTCTCCCTAATTCCAGAAAGAGTGGTTTTCAGAACTGGAAGAATTAAGCGGAAGCAACGAGACTTAATGAAGATTCTCAACAAACATGCTACTAAACCTGTAGATGAAGCTAAACTTGCACATGAAGAATCAAAGAAACCAAAAGCCTTGAAAGCAGTTGAGCTATTTGCCAAGGCAAAAGAAGAACAAGATGGTGGTTCCGTCCTGAACAAAAAAATCTACAGGCTCGGTGATAAGGACCTGCTGGTACTTGTGACAAAGGTTGCTGACAAGATAAAGGTTCATCTGGCAATAGATATCAAAGAGCCAATTAACATTCATTGGGCCCTATCTGTAAACAAAGCTGGAGAGTGGTTTAACATTGCAGCAGACTTGATAAATCAAGCAAAAGATGCTGGCGAGTTAGGTCTTGCTGGTATTCTGGTGTGGATGAGGTTTATGGCTACGAGGCAGCTGATTTGGAATAAAAATTACAATGTCAAACCACGTGAGATTAGTAAAGCACAGGACAGGCTCACAGGCTTGCTCCAGAATATTTACACAAGTCATCCACAGTATCGAGAGCTTCTACAGATGATGATATTGTCTACTGTTGGACGTGGAGGAGAAGGGGATGTGGGACAGCGAATTCGAGATGAGATCCTTGTTATCCAGGTACCGTTTGACTATCCAGCAATTGGTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015291 GO:0015297 GO:0015318 GO:0015711 GO:0015807 GO:0015849 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

766

Amino Acids

85.24

Weight (kDa)

9.07

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	35 - 491	4.5e-53	Amino acid permease
AA_permease	PF00324	57 - 510	2e-18	Amino acid permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
Acc36I	ACCTGC	3 cut(s)	182, 586, 1863
Acc65I	GGTACC	1 cut(s)	2269
AccB1I	GGYRCC	1 cut(s)	2269
AccB7I	CCANNNNNTGG	2 cut(s)	591, 2291
AccI	GTMKAC	1 cut(s)	2201
AciI	CCGC	1 cut(s)	1663
AclWI	GGATC	3 cut(s)	424, 917, 2248
AcoI	YGGCCR	1 cut(s)	1242
AcsI	RAATTY	3 cut(s)	963, 1140, 2241
AcvI	CACGTG	1 cut(s)	2102
AfaI	GTAC	6 cut(s)	400, 509, 1261, 1450, 1863, 2271
AfiI	CCNNNNNNNGG	9 cut(s)	40, 170, 211, 290, 334, 335, 591, 1389, 2291
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	9 cut(s)	112, 1062, 1222, 1330, 1456, 1534, 1556, 1606, 1765
AjiI	CACGTC	1 cut(s)	2213
AjnI	CCWGG	3 cut(s)	239, 1203, 2265
AleI	CACNNNNGTG	1 cut(s)	487
AluBI	AGCT	9 cut(s)	70, 323, 912, 1443, 1724, 1777, 1958, 2068, 2179
AluI	AGCT	9 cut(s)	70, 323, 912, 1443, 1724, 1777, 1958, 2068, 2179
Alw26I	GTCTC	5 cut(s)	365, 929, 1098, 1619, 1668
AlwI	GGATC	3 cut(s)	424, 917, 2248
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	1334
AoxI	GGCC	7 cut(s)	325, 514, 687, 882, 1242, 1337, 1938
ApaI	GGGCCC	1 cut(s)	1942
ApeKI	GCWGC	7 cut(s)	311, 776, 779, 1076, 1187, 1979, 2065
ApoI	RAATTY	3 cut(s)	963, 1140, 2241
ArsI	GACNNNNNNTTYG	2 cut(s)	2226, 2258
Asp700I	GAANNNNTTC	2 cut(s)	1325, 1529
Asp718I	GGTACC	1 cut(s)	2269
AsuC2I	CCSGG	2 cut(s)	1335, 1336
AsuHPI	GGTGA	5 cut(s)	142, 229, 709, 1136, 1856
AvaI	CYCGRG	1 cut(s)	1334
AvaII	GGWCC	5 cut(s)	194, 338, 821, 1538, 1852
AxyI	CCTNAGG	1 cut(s)	693
BaeGI	GKGCMC	1 cut(s)	1942
BanI	GGYRCC	1 cut(s)	2269
BanII	GRGCYC	2 cut(s)	384, 1942
BbrPI	CACGTG	1 cut(s)	2102
BbsI	GAAGAC	1 cut(s)	1405
BbvI	GCAGC	7 cut(s)	298, 763, 791, 1063, 1199, 1991, 2077
BccI	CCATC	6 cut(s)	34, 861, 1199, 1263, 1576, 1799
BceAI	ACGGC	1 cut(s)	1257
BcgI	CGANNNNNNTGC	2 cut(s)	493, 527
BciT130I	CCWGG	3 cut(s)	241, 1205, 2267
BcnI	CCSGG	2 cut(s)	1335, 1336
BcoDI	GTCTC	5 cut(s)	365, 929, 1098, 1619, 1668
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	4 cut(s)	777, 1713, 1834, 2183
BfuAI	ACCTGC	3 cut(s)	182, 586, 1863
BglII	AGATCT	1 cut(s)	267
BisI	GCNGC	7 cut(s)	312, 777, 780, 1077, 1188, 1980, 2066
BlsI	GCNGC	7 cut(s)	313, 778, 781, 1078, 1189, 1981, 2067
Bme1390I	CCNGG	5 cut(s)	241, 1205, 1335, 1336, 2267
Bme18I	GGWCC	5 cut(s)	194, 338, 821, 1538, 1852
BmeT110I	CYCGRG	1 cut(s)	1334
BmgBI	CACGTC	1 cut(s)	2213
BmiI	GGNNCC	7 cut(s)	328, 339, 340, 690, 1813, 1940, 2271
BmrFI	CCNGG	5 cut(s)	241, 1205, 1335, 1336, 2267
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	7 cut(s)	356, 668, 763, 852, 964, 1507, 1996
BmuI	ACTGGG	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	1405
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	4 cut(s)	1026, 1465, 1980, 2126
Bpu10I	CCTNAGC	1 cut(s)	1486
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	1335, 1336
BsaAI	YACGTR	2 cut(s)	667, 2102
BsaI	GGTCTC	2 cut(s)	365, 1098
BsaJI	CCNNGG	6 cut(s)	258, 1108, 1204, 1333, 1334, 1785
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	4 cut(s)	597, 627, 936, 966
Bsc4I	CCNNNNNNNGG	9 cut(s)	40, 170, 211, 290, 334, 335, 591, 1389, 2291
Bse1I	ACTGG	4 cut(s)	457, 1009, 1071, 1654
Bse21I	CCTNAGG	1 cut(s)	693
Bse3DI	GCAATG	3 cut(s)	384, 1593, 1974
BseBI	CCWGG	3 cut(s)	241, 1205, 2267
BseDI	CCNNGG	6 cut(s)	258, 1108, 1204, 1333, 1334, 1785
BseGI	GGATG	6 cut(s)	872, 1274, 1522, 2049, 2161, 2233
BseLI	CCNNNNNNNGG	9 cut(s)	40, 170, 211, 290, 334, 335, 591, 1389, 2291
BseMI	GCAATG	3 cut(s)	384, 1593, 1974
BseMII	CTCAG	4 cut(s)	103, 416, 684, 1308
BseNI	ACTGG	4 cut(s)	457, 1009, 1071, 1654
BseRI	GAGGAG	3 cut(s)	819, 1409, 2232
BseSI	GKGCMC	1 cut(s)	1942
BseXI	GCAGC	7 cut(s)	298, 763, 791, 1063, 1199, 1991, 2077
BseYI	CCCAGC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	1206
BshFI	GGCC	7 cut(s)	327, 516, 689, 884, 1244, 1339, 1940
BshNI	GGYRCC	1 cut(s)	2269
BsiHKCI	CYCGRG	1 cut(s)	1334
BsiSI	CCGG	2 cut(s)	153, 1335
BslFI	GGGAC	6 cut(s)	18, 324, 469, 622, 1221, 2247
BslI	CCNNNNNNNGG	9 cut(s)	40, 170, 211, 290, 334, 335, 591, 1389, 2291
BsmAI	GTCTC	5 cut(s)	365, 929, 1098, 1619, 1668
BsmFI	GGGAC	6 cut(s)	18, 324, 469, 622, 1221, 2247
BsmI	GAATGC	2 cut(s)	897, 1197
BsnI	GGCC	7 cut(s)	327, 516, 689, 884, 1244, 1339, 1940
Bso31I	GGTCTC	2 cut(s)	365, 1098
BsoBI	CYCGRG	1 cut(s)	1334
Bsp120I	GGGCCC	1 cut(s)	1938
Bsp1286I	GDGCHC	2 cut(s)	384, 1942
Bsp1407I	TGTACA	2 cut(s)	507, 1259
Bsp143I	GATC	5 cut(s)	267, 416, 922, 1293, 2253
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	1 cut(s)	1663
BspANI	GGCC	7 cut(s)	327, 516, 689, 884, 1244, 1339, 1940
BspCNI	CTCAG	4 cut(s)	102, 415, 685, 1309
BspLI	GGNNCC	7 cut(s)	328, 339, 340, 690, 1813, 1940, 2271
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	3 cut(s)	182, 586, 1863
BspPI	GGATC	3 cut(s)	424, 917, 2248
BspQI	GCTCTTC	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	2269
BspTNI	GGTCTC	2 cut(s)	365, 1098
BsrDI	GCAATG	3 cut(s)	384, 1593, 1974
BsrGI	TGTACA	2 cut(s)	507, 1259
BsrI	ACTGG	4 cut(s)	457, 1009, 1071, 1654
BssECI	CCNNGG	6 cut(s)	258, 1108, 1204, 1333, 1334, 1785
BssMI	GATC	5 cut(s)	267, 416, 922, 1293, 2253
BssT1I	CCWWGG	3 cut(s)	258, 1108, 1785
Bst2UI	CCWGG	3 cut(s)	241, 1205, 2267
Bst4CI	ACNGT	5 cut(s)	613, 654, 2169, 2206, 2274
Bst6I	CTCTTC	3 cut(s)	88, 152, 280
BstAPI	GCANNNNNTGC	4 cut(s)	197, 1469, 1592, 2006
BstAUI	TGTACA	2 cut(s)	507, 1259
BstBAI	YACGTR	2 cut(s)	667, 2102
BstC8I	GCNNGC	8 cut(s)	202, 325, 391, 716, 957, 1593, 2011, 2138
BstDEI	CTNAG	6 cut(s)	89, 319, 402, 693, 1317, 1486
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	6 cut(s)	872, 1274, 1522, 2049, 2161, 2233
BstKTI	GATC	5 cut(s)	270, 419, 925, 1296, 2256
BstMAI	GTCTC	5 cut(s)	365, 929, 1098, 1619, 1668
BstMBI	GATC	5 cut(s)	267, 416, 922, 1293, 2253
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 320, 1359, 1469, 1583, 1592, 1730, 1766, 2006
BstNI	CCWGG	3 cut(s)	241, 1205, 2267
BstNSI	RCATGY	2 cut(s)	508, 1703
BstSCI	CCNGG	5 cut(s)	239, 1203, 1333, 1334, 2265
BstSFI	CTRYAG	4 cut(s)	777, 1713, 1834, 2183
BstSLI	GKGCMC	1 cut(s)	1942
BstV1I	GCAGC	7 cut(s)	298, 763, 791, 1063, 1199, 1991, 2077
BstV2I	GAAGAC	1 cut(s)	1405
BstX2I	RGATCY	3 cut(s)	267, 416, 2253
BstXI	CCANNNNNNTGG	1 cut(s)	1443
BstYI	RGATCY	3 cut(s)	267, 416, 2253
Bsu36I	CCTNAGG	1 cut(s)	693
BsuRI	GGCC	7 cut(s)	327, 516, 689, 884, 1244, 1339, 1940
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	2213
BtsCI	GGATG	6 cut(s)	872, 1274, 1522, 2049, 2161, 2233
BtsI	GCAGTG	3 cut(s)	425, 732, 1179
BtsIMutI	CAGTG	7 cut(s)	425, 450, 732, 1002, 1078, 1179, 1577
BveI	ACCTGC	3 cut(s)	182, 586, 1863
Cac8I	GCNNGC	8 cut(s)	202, 325, 391, 716, 957, 1593, 2011, 2138
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr9I	CCCGGG	1 cut(s)	1334
CsiI	ACCWGGT	1 cut(s)	239
Csp6I	GTAC	6 cut(s)	399, 508, 1260, 1449, 1862, 2270
CviAII	CATG	6 cut(s)	259, 351, 505, 983, 1700, 1736
CviQI	GTAC	6 cut(s)	399, 508, 1260, 1449, 1862, 2270
DdeI	CTNAG	6 cut(s)	89, 319, 402, 693, 1317, 1486
DpnI	GATC	5 cut(s)	269, 418, 924, 1295, 2255
DpnII	GATC	5 cut(s)	267, 416, 922, 1293, 2253
EaeI	YGGCCR	1 cut(s)	1242
Eam1104I	CTCTTC	3 cut(s)	88, 152, 280
EarI	CTCTTC	3 cut(s)	88, 152, 280
Eco130I	CCWWGG	3 cut(s)	258, 1108, 1785
Eco24I	GRGCYC	2 cut(s)	384, 1942
Eco31I	GGTCTC	2 cut(s)	365, 1098
Eco32I	GATATC	1 cut(s)	1912
Eco47I	GGWCC	5 cut(s)	194, 338, 821, 1538, 1852
Eco72I	CACGTG	1 cut(s)	2102
Eco81I	CCTNAGG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	1334
EcoO109I	RGGNCCY	5 cut(s)	194, 338, 1538, 1852, 1939
EcoRI	GAATTC	1 cut(s)	2241
EcoRII	CCWGG	3 cut(s)	239, 1203, 2265
EcoRV	GATATC	1 cut(s)	1912
EcoT14I	CCWWGG	3 cut(s)	258, 1108, 1785
EcoT22I	ATGCAT	2 cut(s)	506, 979
EcoT38I	GRGCYC	2 cut(s)	384, 1942
ErhI	CCWWGG	3 cut(s)	258, 1108, 1785
FaeI	CATG	6 cut(s)	262, 354, 508, 986, 1703, 1739
FalI	AAGNNNNNCTT	4 cut(s)	703, 735, 1713, 1745
FaqI	GGGAC	6 cut(s)	18, 324, 469, 622, 1221, 2247
FatI	CATG	6 cut(s)	258, 350, 504, 982, 1699, 1735
FauNDI	CATATG	3 cut(s)	409, 587, 1256
FblI	GTMKAC	1 cut(s)	2201
Fnu4HI	GCNGC	7 cut(s)	312, 777, 780, 1077, 1188, 1980, 2066
FokI	GGATG	6 cut(s)	879, 1281, 1529, 2056, 2148, 2240
FriOI	GRGCYC	2 cut(s)	384, 1942
Fsp4HI	GCNGC	7 cut(s)	312, 777, 780, 1077, 1188, 1980, 2066
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	7 cut(s)	312, 777, 780, 1077, 1188, 1980, 2066
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	4 cut(s)	1026, 1465, 1980, 2126
HaeIII	GGCC	7 cut(s)	327, 516, 689, 884, 1244, 1339, 1940
HapII	CCGG	2 cut(s)	153, 1335
Hin1II	CATG	6 cut(s)	262, 354, 508, 986, 1703, 1739
HinfI	GANTC	6 cut(s)	44, 156, 730, 1114, 1687, 1742
HpaII	CCGG	2 cut(s)	153, 1335
HphI	GGTGA	5 cut(s)	142, 229, 709, 1136, 1856
Hpy166II	GTNNAC	4 cut(s)	672, 1055, 1951, 2202
Hpy188I	TCNGA	5 cut(s)	35, 92, 1293, 1494, 1646
Hpy188III	TCNNGA	9 cut(s)	283, 902, 1101, 1219, 1628, 1819, 2143, 2174, 2246
Hpy8I	GTNNAC	4 cut(s)	672, 1055, 1951, 2202
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	1173, 1393, 2216
HpyCH4III	ACNGT	5 cut(s)	613, 654, 2169, 2206, 2274
HpyCH4IV	ACGT	3 cut(s)	666, 2101, 2212
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 320, 1359, 1469, 1583, 1592, 1730, 1766, 2006
HpyF3I	CTNAG	6 cut(s)	89, 319, 402, 693, 1317, 1486
HpySE526I	ACGT	3 cut(s)	666, 2101, 2212
Hsp92II	CATG	6 cut(s)	262, 354, 508, 986, 1703, 1739
KflI	GGGWCCC	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	2273
Kzo9I	GATC	5 cut(s)	267, 416, 922, 1293, 2253
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	5 cut(s)	806, 944, 1007, 1600, 2145
Lsp1109I	GCAGC	7 cut(s)	298, 763, 791, 1063, 1199, 1991, 2077
LweI	GCATC	7 cut(s)	356, 668, 763, 852, 964, 1507, 1996
MabI	ACCWGGT	1 cut(s)	239
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	3 cut(s)	666, 2101, 2212
MaeIII	GTNAC	4 cut(s)	74, 697, 1397, 1867
MalI	GATC	5 cut(s)	269, 418, 924, 1295, 2255
MboI	GATC	5 cut(s)	267, 416, 922, 1293, 2253
MfeI	CAATTG	2 cut(s)	1263, 2289
MflI	RGATCY	3 cut(s)	267, 416, 2253
MhlI	GDGCHC	2 cut(s)	384, 1942
MmeI	TCCRAC	5 cut(s)	229, 583, 1191, 1494, 2188
Mph1103I	ATGCAT	2 cut(s)	506, 979
MroXI	GAANNNNTTC	2 cut(s)	1325, 1529
MseI	TTAA	7 cut(s)	63, 1227, 1358, 1659, 1679, 1926, 1971
MslI	CAYNNNNRTG	2 cut(s)	352, 487
MspA1I	CMGCKG	1 cut(s)	2068
MspI	CCGG	2 cut(s)	153, 1335
MspR9I	CCNGG	5 cut(s)	241, 1205, 1335, 1336, 2267
MunI	CAATTG	2 cut(s)	1263, 2289
Mva1269I	GAATGC	2 cut(s)	897, 1197
MvaI	CCWGG	3 cut(s)	241, 1205, 2267
MwoI	GCNNNNNNNGC	9 cut(s)	197, 320, 1359, 1469, 1583, 1592, 1730, 1766, 2006
NciI	CCSGG	2 cut(s)	1335, 1336
NcoI	CCATGG	1 cut(s)	258
NdeI	CATATG	3 cut(s)	409, 587, 1256
NdeII	GATC	5 cut(s)	267, 416, 922, 1293, 2253
NlaIII	CATG	6 cut(s)	262, 354, 508, 986, 1703, 1739
NlaIV	GGNNCC	7 cut(s)	328, 339, 340, 690, 1813, 1940, 2271
NmuCI	GTSAC	2 cut(s)	697, 1867
NsiI	ATGCAT	2 cut(s)	506, 979
NspI	RCATGY	2 cut(s)	508, 1703
OliI	CACNNNNGTG	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	280
PctI	GAATGC	2 cut(s)	897, 1197
PdmI	GAANNNNTTC	2 cut(s)	1325, 1529
PfeI	GAWTC	6 cut(s)	44, 156, 730, 1114, 1687, 1742
PflMI	CCANNNNNTGG	2 cut(s)	591, 2291
PkrI	GCNGC	7 cut(s)	313, 778, 781, 1078, 1189, 1981, 2067
PmaCI	CACGTG	1 cut(s)	2102
PmlI	CACGTG	1 cut(s)	2102
Ppu21I	YACGTR	2 cut(s)	667, 2102
PpuMI	RGGWCCY	4 cut(s)	194, 338, 1538, 1852
PsiI	TTATAA	1 cut(s)	623
Psp5II	RGGWCCY	4 cut(s)	194, 338, 1538, 1852
Psp6I	CCWGG	3 cut(s)	239, 1203, 2265
PspCI	CACGTG	1 cut(s)	2102
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	239, 1203, 2265
PspN4I	GGNNCC	7 cut(s)	328, 339, 340, 690, 1813, 1940, 2271
PspOMI	GGGCCC	1 cut(s)	1938
PspPPI	RGGWCCY	4 cut(s)	194, 338, 1538, 1852
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	267, 416, 2253
PvuII	CAGCTG	1 cut(s)	2068
RsaI	GTAC	6 cut(s)	400, 509, 1261, 1450, 1863, 2271
RsaNI	GTAC	6 cut(s)	399, 508, 1260, 1449, 1862, 2270
RseI	CAYNNNNRTG	2 cut(s)	352, 487
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	7 cut(s)	63, 1227, 1358, 1659, 1679, 1926, 1971
SatI	GCNGC	7 cut(s)	312, 777, 780, 1077, 1188, 1980, 2066
Sau3AI	GATC	5 cut(s)	267, 416, 922, 1293, 2253
ScrFI	CCNGG	5 cut(s)	241, 1205, 1335, 1336, 2267
SduI	GDGCHC	2 cut(s)	384, 1942
SexAI	ACCWGGT	1 cut(s)	239
SfaNI	GCATC	7 cut(s)	356, 668, 763, 852, 964, 1507, 1996
SfcI	CTRYAG	4 cut(s)	777, 1713, 1834, 2183
SinI	GGWCC	5 cut(s)	194, 338, 821, 1538, 1852
SmaI	CCCGGG	1 cut(s)	1336
SmiMI	CAYNNNNRTG	2 cut(s)	352, 487
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SsiI	CCGC	1 cut(s)	1663
SspI	AATATT	1 cut(s)	2149
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	5 cut(s)	239, 1203, 1333, 1334, 2265
StyI	CCWWGG	3 cut(s)	258, 1108, 1785
TaaI	ACNGT	5 cut(s)	613, 654, 2169, 2206, 2274
TaiI	ACGT	3 cut(s)	669, 2104, 2215
TaqI	TCGA	4 cut(s)	134, 681, 2173, 2245
TaqII	GACCGA	1 cut(s)	1381
TatI	WGTACW	3 cut(s)	507, 1259, 1448
TfiI	GAWTC	6 cut(s)	44, 156, 730, 1114, 1687, 1742
Tru1I	TTAA	7 cut(s)	63, 1227, 1358, 1659, 1679, 1926, 1971
Tru9I	TTAA	7 cut(s)	63, 1227, 1358, 1659, 1679, 1926, 1971
TscAI	CASTG	7 cut(s)	432, 457, 732, 1009, 1078, 1179, 1584
TseFI	GTSAC	2 cut(s)	697, 1867
TseI	GCWGC	7 cut(s)	311, 776, 779, 1076, 1187, 1979, 2065
Tsp45I	GTSAC	2 cut(s)	697, 1867
TspDTI	ATGAA	8 cut(s)	747, 971, 1029, 1697, 1734, 1752, 1886, 1922
TspGWI	ACGGA	1 cut(s)	1804
TspMI	CCCGGG	1 cut(s)	1334
TspRI	CASTG	7 cut(s)	432, 457, 732, 1009, 1078, 1179, 1584
Van91I	CCANNNNNTGG	2 cut(s)	591, 2291
VpaK11BI	GGWCC	5 cut(s)	194, 338, 821, 1538, 1852
XapI	RAATTY	3 cut(s)	963, 1140, 2241
XceI	RCATGY	2 cut(s)	508, 1703
XmaI	CCCGGG	1 cut(s)	1334
XmiI	GTMKAC	1 cut(s)	2201
XmnI	GAANNNNTTC	2 cut(s)	1325, 1529
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	2 cut(s)	506, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.