Rw6G032830

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001248
Physical Location & Seq
Forward (+)
57081589 .. 57084040
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G032830.1

Sequence Viewer

Length: 1389 bp
ATGGATCCTGGAGAAAAGCGTCTGAATGAGCTTGGTTATAAGCAAGAACTGAGGAGGGAGATGACGCTGCTCAAGACACTGGCAATAACCTTTTCATGCATATCAGTATTTTCTGGTACACCTCTCTATGGCCAAAGCTTGCGCTATGCAGGTCCTGCGACCTTAATATGGGGTTGGGTAGCTGTCACATTCTTCACATGGTTTACCACTGGTTCTCTTTACTTCTGGGCTTCCCATTTGGCTGGACCCAGGTGGGGCCCGTTTGCTTCGTGGTGCTGTGCTTGGCTTGAGACTACTGGCGTGATATCTGCAATAGGTGCTCAGGCGTATTCTGCATCACAAGCATTGCAGATGATCATCCTTATAGCCACAGGAACAAACAAGGGTCTAATCATCATATGGGCAGTACTAAACACATTTGCCCCACAAGTGATAGCATTTCTCAACATAATTTCCATATGGTGGCAGGTACTTGGTGGTTTGCTTGTGATTATAATGCTTCCTCTGGTGGCACAGACGACACAGTCAGCTTCTTATGTCTTCACACATTTTGAAACTTCTCCGGAGTTGACTGGGATATCTAGCATACCTTATGCAGTGATTTTATCAGTTCTTCTGAGCATCTACTCTCTATACGGTTTTGATGCTGCAGCTCATCTTACTGAGGAGACGAAAGGCGCAGATAGAACTGGTCCTATAGCCATTCTATCTAGTTTTGGGATTATATCAGTGCTTGGTTGGGCTTATTACATAGCTCTCACATTCAGCATCCGGACAATGAGACTGCTGGTGCTTGTACCAGCACAGATAATATACGAAGCATTCTATGGGAGGTTTCATAATTCAAACGGAGCTGTGGCTTTCCTCTGTATCATGTGGGGTTCCTACTTCTTTTGTGGGTTGTCAGTTATCACCACAGCTGCCCGAGTAGTTTATGCTCTATCAAGGGATAATGGCATCCCCTTTTCACCAATTTGGAGGAAAGTGCATCCAAGAAGCAAGGTCCCAACAAATGCAGTGTGGCTCTGCGCAGCCATCGGTATCCTGCTAGGATTACCCATCTTAAAACTTGACTTGGTATTCACAGCCATCATTTCAGTTAGTACAATTGGTTGGGTGGGTGGTTATGCAGTACCTATTTTTGCTAGGCTGGTGATGGTTGAAGAGAAATTCAAAGCAGGACCCTTCTATTTGGGCAGAGGAAGCAGGCCAGTTTGCTTTGTGGCCTTTGTGTGGATATGTTATGCATGTTCTACCTTCTTATTGCCAACTTTCTATCCTCTTAGATGGAAAACTTTCAATTATGCACCAATTGCTCTTAGTGTTGTTTTGACACTGATAATGCTTTGGTGGGTTTTGGATGCAAGGAAAGTTCAAAGGACCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

462

Amino Acids

51.24

Weight (kDa)

9.34

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 24 - 441 2.6e-37 Amino acid permease
AA_permease PF00324 63 - 457 1.9e-09 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 494
AasI GACNNNNNNGTC 1 cut(s) 523
Acc16I TGCGCA 1 cut(s) 1030
Acc36I ACCTGC 2 cut(s) 140, 457
AccB7I CCANNNNNTGG 1 cut(s) 462
AccIII TCCGGA 2 cut(s) 562, 771
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 1169
AfaI GTAC 6 cut(s) 118, 408, 471, 798, 1105, 1134
AfiI CCNNNNNNNGG 5 cut(s) 128, 168, 254, 462, 1233
AgsI TTSAA 6 cut(s) 554, 846, 1163, 1174, 1300, 1376
AjnI CCWGG 2 cut(s) 7, 248
AluBI AGCT 8 cut(s) 31, 138, 182, 530, 653, 755, 854, 920
AluI AGCT 8 cut(s) 31, 138, 182, 530, 653, 755, 854, 920
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 3 cut(s) 284, 662, 775
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 924
Aor13HI TCCGGA 2 cut(s) 562, 771
AoxI GGCC 4 cut(s) 130, 256, 1208, 1224
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 5 cut(s) 67, 647, 650, 920, 1031
ApoI RAATTY 1 cut(s) 1169
Asp700I GAANNNNTTC 1 cut(s) 1295
AspLEI GCGC 3 cut(s) 144, 680, 1031
AspS9I GGNCC 8 cut(s) 152, 245, 256, 257, 692, 1003, 1181, 1380
AsuHPI GGTGA 3 cut(s) 904, 960, 1165
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 6 cut(s) 152, 245, 692, 1003, 1181, 1380
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 132
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 5 cut(s) 54, 634, 662, 907, 1043
BccI CCATC 5 cut(s) 1043, 1067, 1097, 1150, 1281
BciT130I CCWGG 2 cut(s) 9, 250
BciVI GTATCC 1 cut(s) 1052
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 3 cut(s) 284, 662, 775
BfaI CTAG 4 cut(s) 582, 711, 1049, 1146
BfmI CTRYAG 2 cut(s) 648, 696
BfuAI ACCTGC 2 cut(s) 140, 457
BfuI GTATCC 1 cut(s) 1052
BisI GCNGC 5 cut(s) 68, 648, 651, 921, 1032
BlsI GCNGC 5 cut(s) 69, 649, 652, 922, 1033
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 2 cut(s) 9, 250
Bme18I GGWCC 6 cut(s) 152, 245, 692, 1003, 1181, 1380
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 8 cut(s) 152, 245, 256, 257, 692, 1003, 1181, 1380
BmiI GGNNCC 8 cut(s) 6, 247, 257, 258, 883, 1005, 1183, 1382
BmrFI CCNGG 2 cut(s) 9, 250
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 7 cut(s) 344, 630, 634, 777, 966, 997, 1351
BmuI ACTGGG 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 56, 308
BsaBI GATNNNNATC 1 cut(s) 356
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 2 cut(s) 562, 771
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 168, 254, 462, 1233
Bse1I ACTGG 6 cut(s) 84, 214, 301, 577, 694, 1211
Bse3DI GCAATG 1 cut(s) 344
Bse8I GATNNNNATC 1 cut(s) 356
BseAI TCCGGA 2 cut(s) 562, 771
BseBI CCWGG 2 cut(s) 9, 250
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 5 cut(s) 357, 768, 957, 988, 1366
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 5 cut(s) 128, 168, 254, 462, 1233
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 4 cut(s) 41, 335, 608, 654
BseNI ACTGG 6 cut(s) 84, 214, 301, 577, 694, 1211
BseRI GAGGAG 2 cut(s) 67, 680
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 5 cut(s) 54, 634, 662, 907, 1043
BshFI GGCC 4 cut(s) 132, 258, 1210, 1226
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 2 cut(s) 563, 772
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 5 cut(s) 128, 168, 254, 462, 1233
BsmAI GTCTC 3 cut(s) 284, 662, 775
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 989
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 4 cut(s) 132, 258, 1210, 1226
BsoBI CYCGRG 1 cut(s) 924
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 260, 322
Bsp13I TCCGGA 2 cut(s) 562, 771
Bsp143I GATC 2 cut(s) 4, 354
BspANI GGCC 4 cut(s) 132, 258, 1210, 1226
BspCNI CTCAG 4 cut(s) 42, 334, 609, 655
BspEI TCCGGA 2 cut(s) 562, 771
BspLI GGNNCC 8 cut(s) 6, 247, 257, 258, 883, 1005, 1183, 1382
BspMAI CTGCAG 1 cut(s) 652
BspMI ACCTGC 2 cut(s) 140, 457
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 6 cut(s) 84, 214, 301, 577, 694, 1211
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 2 cut(s) 4, 354
Bst2UI CCWGG 2 cut(s) 9, 250
Bst4CI ACNGT 2 cut(s) 525, 638
Bst6I CTCTTC 1 cut(s) 1158
BstAPI GCANNNNNTGC 3 cut(s) 155, 317, 1313
BstC8I GCNNGC 2 cut(s) 140, 1208
BstDEI CTNAG 6 cut(s) 50, 321, 617, 663, 1283, 1319
BstF5I GGATG 5 cut(s) 357, 768, 957, 988, 1366
BstHHI GCGC 3 cut(s) 144, 680, 1031
BstKTI GATC 2 cut(s) 7, 357
BstMAI GTCTC 3 cut(s) 284, 662, 775
BstMBI GATC 2 cut(s) 4, 354
BstMWI GCNNNNNNNGC 6 cut(s) 155, 317, 332, 341, 1203, 1313
BstNI CCWGG 2 cut(s) 9, 250
BstNSI RCATGY 1 cut(s) 1251
BstSCI CCNGG 2 cut(s) 7, 248
BstSFI CTRYAG 2 cut(s) 648, 696
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 5 cut(s) 54, 634, 662, 907, 1043
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 1052
BsuRI GGCC 4 cut(s) 132, 258, 1210, 1226
BtsCI GGATG 5 cut(s) 357, 768, 957, 988, 1366
BtsI GCAGTG 2 cut(s) 603, 1023
BtsIMutI CAGTG 6 cut(s) 77, 207, 603, 735, 1023, 1334
BveI ACCTGC 2 cut(s) 140, 457
Cac8I GCNNGC 2 cut(s) 140, 1208
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 3 cut(s) 144, 680, 1031
Cfr13I GGNCC 8 cut(s) 152, 245, 256, 257, 692, 1003, 1181, 1380
CseI GACGC 2 cut(s) 8, 73
Csp6I GTAC 6 cut(s) 117, 407, 470, 797, 1104, 1133
CviAII CATG 4 cut(s) 96, 198, 874, 1248
CviQI GTAC 6 cut(s) 117, 407, 470, 797, 1104, 1133
DdeI CTNAG 6 cut(s) 50, 321, 617, 663, 1283, 1319
DpnI GATC 2 cut(s) 6, 356
DpnII GATC 2 cut(s) 4, 354
DrdI GACNNNNNNGTC 1 cut(s) 523
DseDI GACNNNNNNGTC 1 cut(s) 523
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 1158
EarI CTCTTC 1 cut(s) 1158
Eco24I GRGCYC 1 cut(s) 260
Eco32I GATATC 2 cut(s) 306, 579
Eco47I GGWCC 6 cut(s) 152, 245, 692, 1003, 1181, 1380
Eco88I CYCGRG 1 cut(s) 924
EcoO109I RGGNCCY 5 cut(s) 152, 256, 1003, 1181, 1380
EcoRII CCWGG 2 cut(s) 7, 248
EcoRV GATATC 2 cut(s) 306, 579
EcoT22I ATGCAT 2 cut(s) 101, 1249
EcoT38I GRGCYC 1 cut(s) 260
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 4 cut(s) 99, 201, 877, 1251
FaqI GGGAC 1 cut(s) 989
FatI CATG 4 cut(s) 95, 197, 873, 1247
FauNDI CATATG 2 cut(s) 398, 458
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 5 cut(s) 68, 648, 651, 921, 1032
FokI GGATG 5 cut(s) 344, 755, 944, 975, 1373
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 5 cut(s) 68, 648, 651, 921, 1032
FspBI CTAG 4 cut(s) 582, 711, 1049, 1146
FspI TGCGCA 1 cut(s) 1030
GlaI GCGC 3 cut(s) 143, 679, 1030
GluI GCNGC 5 cut(s) 68, 648, 651, 921, 1032
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 4 cut(s) 132, 258, 1210, 1226
HapII CCGG 2 cut(s) 563, 772
HgaI GACGC 2 cut(s) 8, 73
HhaI GCGC 3 cut(s) 144, 680, 1031
Hin1II CATG 4 cut(s) 99, 201, 877, 1251
Hin6I GCGC 3 cut(s) 142, 678, 1029
HinP1I GCGC 3 cut(s) 142, 678, 1029
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 136
HpaII CCGG 2 cut(s) 563, 772
HphI GGTGA 3 cut(s) 904, 960, 1165
Hpy166II GTNNAC 3 cut(s) 119, 204, 570
Hpy188I TCNGA 2 cut(s) 24, 618
Hpy188III TCNNGA 3 cut(s) 73, 563, 772
Hpy8I GTNNAC 3 cut(s) 119, 204, 570
HpyAV CCTTC 2 cut(s) 1195, 1267
HpyCH4III ACNGT 2 cut(s) 525, 638
HpyF10VI GCNNNNNNNGC 6 cut(s) 155, 317, 332, 341, 1203, 1313
HpyF3I CTNAG 6 cut(s) 50, 321, 617, 663, 1283, 1319
Hsp92II CATG 4 cut(s) 99, 201, 877, 1251
HspAI GCGC 3 cut(s) 142, 678, 1029
Kpn2I TCCGGA 2 cut(s) 562, 771
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 2 cut(s) 4, 354
LmnI GCTCC 1 cut(s) 851
Lsp1109I GCAGC 5 cut(s) 54, 634, 662, 907, 1043
LweI GCATC 7 cut(s) 344, 630, 634, 777, 966, 997, 1351
MaeI CTAG 4 cut(s) 582, 711, 1049, 1146
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 6, 356
MboI GATC 2 cut(s) 4, 354
MboII GAAGA 4 cut(s) 184, 532, 605, 1175
MfeI CAATTG 2 cut(s) 1107, 1311
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 260, 322
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 7 cut(s) 450, 841, 972, 1107, 1169, 1300, 1311
MluNI TGGCCA 1 cut(s) 132
Mox20I TGGCCA 1 cut(s) 132
Mph1103I ATGCAT 2 cut(s) 101, 1249
MroI TCCGGA 2 cut(s) 562, 771
MroXI GAANNNNTTC 1 cut(s) 1295
MscI TGGCCA 1 cut(s) 132
MseI TTAA 2 cut(s) 164, 1064
Msp20I TGGCCA 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 2 cut(s) 563, 772
MspR9I CCNGG 2 cut(s) 9, 250
MunI CAATTG 2 cut(s) 1107, 1311
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 2 cut(s) 9, 250
MwoI GCNNNNNNNGC 6 cut(s) 155, 317, 332, 341, 1203, 1313
NdeI CATATG 2 cut(s) 398, 458
NdeII GATC 2 cut(s) 4, 354
NlaIII CATG 4 cut(s) 99, 201, 877, 1251
NlaIV GGNNCC 8 cut(s) 6, 247, 257, 258, 883, 1005, 1183, 1382
NmuCI GTSAC 1 cut(s) 184
NsbI TGCGCA 1 cut(s) 1030
NsiI ATGCAT 2 cut(s) 101, 1249
NspI RCATGY 1 cut(s) 1251
PctI GAATGC 1 cut(s) 821
PdmI GAANNNNTTC 1 cut(s) 1295
PflFI GACNNNGTC 1 cut(s) 523
PflMI CCANNNNNTGG 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 5 cut(s) 69, 649, 652, 922, 1033
PpuMI RGGWCCY 4 cut(s) 152, 1003, 1181, 1380
PsiI TTATAA 2 cut(s) 39, 494
Psp5II RGGWCCY 4 cut(s) 152, 1003, 1181, 1380
Psp6I CCWGG 2 cut(s) 7, 248
PspGI CCWGG 2 cut(s) 7, 248
PspN4I GGNNCC 8 cut(s) 6, 247, 257, 258, 883, 1005, 1183, 1382
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 8 cut(s) 152, 245, 256, 257, 692, 1003, 1181, 1380
PspPPI RGGWCCY 4 cut(s) 152, 1003, 1181, 1380
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 523
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 6 cut(s) 118, 408, 471, 798, 1105, 1134
RsaNI GTAC 6 cut(s) 117, 407, 470, 797, 1104, 1133
SaqAI TTAA 2 cut(s) 164, 1064
SatI GCNGC 5 cut(s) 68, 648, 651, 921, 1032
Sau3AI GATC 2 cut(s) 4, 354
Sau96I GGNCC 8 cut(s) 152, 245, 256, 257, 692, 1003, 1181, 1380
ScaI AGTACT 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 9, 250
SduI GDGCHC 2 cut(s) 260, 322
SfaNI GCATC 7 cut(s) 344, 630, 634, 777, 966, 997, 1351
SfcI CTRYAG 2 cut(s) 648, 696
SinI GGWCC 6 cut(s) 152, 245, 692, 1003, 1181, 1380
SmlI CTYRAG 2 cut(s) 71, 287
SmoI CTYRAG 2 cut(s) 71, 287
Sse9I AATT 7 cut(s) 450, 841, 972, 1107, 1169, 1300, 1311
SspMI CTAG 4 cut(s) 582, 711, 1049, 1146
StyD4I CCNGG 2 cut(s) 7, 248
TaaI ACNGT 2 cut(s) 525, 638
TasI AATT 7 cut(s) 450, 841, 972, 1107, 1169, 1300, 1311
TatI WGTACW 2 cut(s) 406, 1103
Tru1I TTAA 2 cut(s) 164, 1064
Tru9I TTAA 2 cut(s) 164, 1064
TscAI CASTG 6 cut(s) 84, 214, 603, 735, 1023, 1341
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 5 cut(s) 67, 647, 650, 920, 1031
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 84, 827
TspGWI ACGGA 1 cut(s) 864
TspRI CASTG 6 cut(s) 84, 214, 603, 735, 1023, 1341
Tth111I GACNNNGTC 1 cut(s) 523
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 6 cut(s) 152, 245, 692, 1003, 1181, 1380
XapI RAATTY 1 cut(s) 1169
XceI RCATGY 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 4 cut(s) 582, 711, 1049, 1146
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 2 cut(s) 101, 1249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.