Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001741.1

Orthogroup ID

OG0001248

Physical Location & Seq

Genomic Coordinates Reverse (-)

91667 .. 93838

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001741.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggatcctggagaaaagcgtctgaatgagcttggttataagcaagaactgaggagggagatgacgctgttcaagacactggcaataaccttttcatgcatatcagtattttctggtacacctctctatggccaaagcttgcgctatgcaggtcctgcgaccttaatatggggttgggtagctgtcacattcttcacatggtttgttgcaatcgccatggctgagatttgctcctctttccctgtacttggtggtttgcttgtgattataatgcttcctctggtggcacagacgacacagtcagcttcttatgtcttcacacattttgaaacttctcctgagttgactgggatatctagcataccttatgcagtgattttatcagttcttctgagcatctactctctatacggttttgatgctgcagctcatcttactgaggagacgaaaggcgcagatagaactggtcctatagccattctatctagttttgggattatatcagtgcttggttgggcttattacatagctctcacattcagcatccgggatgtggactatttgtacaatgtagacaatgagactgctggtgcacttgtaccagcacagataatatacgaagcattctatgggaggtttcataattcaaacggagctgtggctttcctctgtatcatctggggttcctacttcttttgtgggttgtcagttatcaccacagctgcccgagtagtttatgctctatcaagggataatggcatccccttttcaccaatttggaggaaagtgcatccaagaagcaaggtcccaacaaatgcagtgtggctctgcgcagccatcggtatcctgctaggattacccatcttgaaacttgacttggtattcacagccatcatttcagttagtacaattggttgggtgggtggttatgcagtacctatttttctaggctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

318

Amino Acids

34.81

Weight (kDa)

6.42

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001248)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24970 FvH4_2g27760 FvH4_2g27770 FvH4_2g27771
malus_domestica	MD00G1162300.v1.1 MD01G1000200.v1.1
prunus_persica	Prupe.1G490100_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490200_v2.0.a1 Prupe.1G490300_v2.0.a1 Prupe.4G276400_v2.0.a1 Prupe.4G276400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0122601 RchiOBHm_Chr6g0296631 RchiOBHm_Chr6g0296641 RchiOBHm_Chr6g0296651
rosa_laevigata	RLG00000011673 RLG00000011674 RLG00000011675 RLG00000018694
rosa_multiflora	Rmu_sc0001741.1_g000017 Rmu_sc0001741.1_g000018 Rmu_sc0003133.1_g000008
rosa_roxburghii	Rroxscaffold_7G00171300 Rroxscaffold_7G00171310 Rroxscaffold_7G00171320 Rroxscaffold_7G00178780 Rroxscaffold_7G00178790
rosa_rugosa	Rorug02G0240000 Rorug06G0263800 Rorug06G0263900 Rorug06G0263900
rosa_samantha	Rh2AG298500 Rh2BG307300 Rh2CG285400 Rh2DG322100 Rh6AG375200 Rh6AG375300 Rh6AG375400 Rh6AG375500 Rh6BG383700 Rh6BG383800 Rh6BG383900 Rh6CG388900 Rh6CG389000 Rh6CG389100 Rh6DG376200 Rh6DG376300 Rh6DG376400
rosa_wichuraiana	Rw2G023730 Rw6G032730 Rw6G032740 Rw6G032750 Rw6G032820 Rw6G032830 Rw6G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	39, 269
AasI	GACNNNNNNGTC	1 cut(s)	298
Acc16I	TGCGCA	1 cut(s)	832
Acc36I	ACCTGC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	573
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	130
AfaI	GTAC	6 cut(s)	118, 246, 566, 600, 907, 936
AfiI	CCNNNNNNNGG	4 cut(s)	128, 168, 248, 553
AgsI	TTSAA	4 cut(s)	73, 329, 648, 868
AjnI	CCWGG	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	2 cut(s)	860, 892
AluBI	AGCT	8 cut(s)	31, 138, 182, 305, 428, 530, 656, 722
AluI	AGCT	8 cut(s)	31, 138, 182, 305, 428, 530, 656, 722
Alw21I	GWGCWC	1 cut(s)	595
Alw26I	GTCTC	2 cut(s)	437, 575
Alw44I	GTGCAC	1 cut(s)	591
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	1 cut(s)	130
ApaLI	GTGCAC	1 cut(s)	591
ApeKI	GCWGC	4 cut(s)	422, 425, 722, 833
AspLEI	GCGC	3 cut(s)	144, 455, 833
AspS9I	GGNCC	3 cut(s)	152, 467, 805
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	2 cut(s)	706, 762
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	3 cut(s)	152, 467, 805
BaeGI	GKGCMC	1 cut(s)	595
BalI	TGGCCA	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	595
BbvI	GCAGC	4 cut(s)	409, 437, 709, 845
BccI	CCATC	3 cut(s)	845, 869, 899
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	1 cut(s)	854
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	2 cut(s)	437, 575
BfaI	CTAG	4 cut(s)	357, 486, 851, 947
BfmI	CTRYAG	2 cut(s)	423, 471
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	854
BisI	GCNGC	4 cut(s)	423, 426, 723, 834
BlsI	GCNGC	4 cut(s)	424, 427, 724, 835
Bme1390I	CCNGG	2 cut(s)	9, 548
Bme18I	GGWCC	3 cut(s)	152, 467, 805
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	3 cut(s)	152, 467, 805
BmiI	GGNNCC	3 cut(s)	6, 685, 807
BmrFI	CCNGG	2 cut(s)	9, 548
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	5 cut(s)	405, 409, 552, 768, 799
BmuI	ACTGGG	1 cut(s)	357
BpiI	GAAGAC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 168, 248, 553
Bse1I	ACTGG	3 cut(s)	84, 352, 469
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	543, 556, 759, 790
BseLI	CCNNNNNNNGG	4 cut(s)	128, 168, 248, 553
BseMII	CTCAG	5 cut(s)	41, 213, 330, 383, 429
BseNI	ACTGG	3 cut(s)	84, 352, 469
BseRI	GAGGAG	3 cut(s)	67, 223, 455
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	4 cut(s)	409, 437, 709, 845
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	595
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	4 cut(s)	128, 168, 248, 553
BsmAI	GTCTC	2 cut(s)	437, 575
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	216
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	42, 214, 331, 384, 430
BspLI	GGNNCC	3 cut(s)	6, 685, 807
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	3 cut(s)	84, 352, 469
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	300, 413
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	5 cut(s)	50, 222, 339, 392, 438
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	4 cut(s)	543, 556, 759, 790
BstHHI	GCGC	3 cut(s)	144, 455, 833
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	437, 575
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	7, 546
BstSFI	CTRYAG	2 cut(s)	423, 471
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	4 cut(s)	409, 437, 709, 845
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	4 cut(s)	543, 556, 759, 790
BtsI	GCAGTG	2 cut(s)	378, 825
BtsIMutI	CAGTG	4 cut(s)	77, 378, 510, 825
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	3 cut(s)	144, 455, 833
Cfr13I	GGNCC	3 cut(s)	152, 467, 805
CseI	GACGC	2 cut(s)	8, 73
Csp6I	GTAC	6 cut(s)	117, 245, 565, 599, 906, 935
CviAII	CATG	3 cut(s)	96, 198, 217
CviQI	GTAC	6 cut(s)	117, 245, 565, 599, 906, 935
DdeI	CTNAG	5 cut(s)	50, 222, 339, 392, 438
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	354
Eco47I	GGWCC	3 cut(s)	152, 467, 805
Eco88I	CYCGRG	1 cut(s)	726
EcoO109I	RGGNCCY	2 cut(s)	152, 805
EcoRII	CCWGG	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	3 cut(s)	99, 201, 220
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	3 cut(s)	95, 197, 216
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	423, 426, 723, 834
FokI	GGATG	4 cut(s)	530, 563, 746, 777
Fsp4HI	GCNGC	4 cut(s)	423, 426, 723, 834
FspBI	CTAG	4 cut(s)	357, 486, 851, 947
FspI	TGCGCA	1 cut(s)	832
GlaI	GCGC	3 cut(s)	143, 454, 832
GluI	GCNGC	4 cut(s)	423, 426, 723, 834
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	547
HgaI	GACGC	2 cut(s)	8, 73
HhaI	GCGC	3 cut(s)	144, 455, 833
Hin1II	CATG	3 cut(s)	99, 201, 220
Hin6I	GCGC	3 cut(s)	142, 453, 831
HinP1I	GCGC	3 cut(s)	142, 453, 831
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	136
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	2 cut(s)	706, 762
Hpy166II	GTNNAC	5 cut(s)	119, 345, 556, 574, 593
Hpy188I	TCNGA	2 cut(s)	24, 393
Hpy188III	TCNNGA	3 cut(s)	73, 338, 865
Hpy8I	GTNNAC	5 cut(s)	119, 345, 556, 574, 593
HpyCH4III	ACNGT	2 cut(s)	300, 413
HpyCH4V	TGCA	9 cut(s)	99, 149, 209, 371, 425, 593, 790, 818, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	5 cut(s)	50, 222, 339, 392, 438
Hsp92II	CATG	3 cut(s)	99, 201, 220
HspAI	GCGC	3 cut(s)	142, 453, 831
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	236, 653
Lsp1109I	GCAGC	4 cut(s)	409, 437, 709, 845
LweI	GCATC	5 cut(s)	405, 409, 552, 768, 799
MaeI	CTAG	4 cut(s)	357, 486, 851, 947
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	184, 307, 380
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	3 cut(s)	643, 774, 909
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	9 cut(s)	45, 48, 132, 244, 288, 433, 627, 677, 774
Mox20I	TGGCCA	1 cut(s)	132
Mph1103I	ATGCAT	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	2 cut(s)	9, 548
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	548
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	99, 201, 220
NlaIV	GGNNCC	3 cut(s)	6, 685, 807
NmuCI	GTSAC	1 cut(s)	184
NsbI	TGCGCA	1 cut(s)	832
NsiI	ATGCAT	1 cut(s)	101
PctI	GAATGC	1 cut(s)	623
PflFI	GACNNNGTC	1 cut(s)	298
PfoI	TCCNGGA	2 cut(s)	7, 546
PkrI	GCNGC	4 cut(s)	424, 427, 724, 835
PpuMI	RGGWCCY	2 cut(s)	152, 805
PsiI	TTATAA	2 cut(s)	39, 269
Psp5II	RGGWCCY	2 cut(s)	152, 805
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	6, 685, 807
PspPI	GGNCC	3 cut(s)	152, 467, 805
PspPPI	RGGWCCY	2 cut(s)	152, 805
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	298
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	6 cut(s)	118, 246, 566, 600, 907, 936
RsaNI	GTAC	6 cut(s)	117, 245, 565, 599, 906, 935
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	4 cut(s)	423, 426, 723, 834
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	3 cut(s)	152, 467, 805
ScrFI	CCNGG	2 cut(s)	9, 548
SduI	GDGCHC	1 cut(s)	595
SfaNI	GCATC	5 cut(s)	405, 409, 552, 768, 799
SfcI	CTRYAG	2 cut(s)	423, 471
SinI	GGWCC	3 cut(s)	152, 467, 805
Sse9I	AATT	3 cut(s)	643, 774, 909
SspMI	CTAG	4 cut(s)	357, 486, 851, 947
StyD4I	CCNGG	2 cut(s)	7, 546
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	300, 413
TasI	AATT	3 cut(s)	643, 774, 909
TatI	WGTACW	3 cut(s)	244, 564, 905
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	4 cut(s)	84, 378, 510, 825
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	4 cut(s)	422, 425, 722, 833
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	84, 629
TspGWI	ACGGA	1 cut(s)	666
TspRI	CASTG	4 cut(s)	84, 378, 510, 825
Tth111I	GACNNNGTC	1 cut(s)	298
VneI	GTGCAC	1 cut(s)	591
VpaK11BI	GGWCC	3 cut(s)	152, 467, 805
XmiI	GTMKAC	1 cut(s)	573
XspI	CTAG	4 cut(s)	357, 486, 851, 947
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.