Rh6AG375300

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001248
Physical Location & Seq
Forward (+)
57406897 .. 57414687
7791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG375300.1

Sequence Viewer

Length: 876 bp
ATGGATCCAGGGGAAAAGCGTCTGAATGAGCTTGGTTATAAGCAAGAACTGAGGAGGGAGATGCTAGAGTCTGATCCTTTTTCACTTTGGTTTATTTCATGCATATCAGTATTTTCTGGTACACCTCTCTATGGCCAAAGCTTGCGCTATGCAGGTCCTGCGACCTTAATATGGGGTTGGATAGCTGTCACATTCTTCACATGGTTTGTTGCAATCGCCATGGCTGAGATTTGCTCCTCTTTCCCAACCACTGGTTCTCTTTACTTCTGGGCTTCCCATTTGGCTGGACCCAGGTGGGGCCCGTTTGCTTCGTGGTGCTGTGCTTGGCTTGAGACCATTGGCTTGATATCTGCAATAGGTGCTCAGGCGTATTCTGCATCACAAGCATTGCAGATGATCATCCTTATAGCCACAGGAACAAACAAGGGTAGAGGCTATTTTGCACCAAAGGAAGTTTTTCTGTGCATGTATGTGGGTCTAATCATCATATGGGCAGTACTAAACACATTTGCTCTACAAGTGATAGCATTTCTCAACATAATTTCCATATGGTGGCAGGTACTTGGTGGTTTGCTTGTGATTATAATGCTTCCTCTGGTGGCACAGACGACACAGTCAGCTTCTTATGTCTTAACACATTTTGAAACTTCTCCTGAGTCGACTGGGATATCTAGCATACCTTATGCAGTGATTTTATCAGTTCTTCTGAGCATCTACTCTCTATACGGTTTTGATGCTGCAGCTCATCTTACTGAGGAGACGAAGGGCGCAGATAGAACTGGTCCAATAGCCATTCTATCTAGTTTTGGGATTATATCAGTGCTTGGTTGGGCTTATTACATAGCTCTCACATTCAGCATCCGGGTATGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

291

Amino Acids

31.99

Weight (kDa)

5.6

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 27 - 286 5.7e-26 Amino acid permease
AA_permease PF00324 45 - 284 1.9e-09 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 584
AasI GACNNNNNNGTC 1 cut(s) 613
Acc36I ACCTGC 2 cut(s) 143, 547
AccB7I CCANNNNNTGG 2 cut(s) 251, 552
AccI GTMKAC 1 cut(s) 659
AclWI GGATC 2 cut(s) 12, 68
AcoI YGGCCR 1 cut(s) 133
AfaI GTAC 3 cut(s) 121, 498, 561
AfiI CCNNNNNNNGG 5 cut(s) 131, 171, 251, 296, 552
AgsI TTSAA 1 cut(s) 644
AjnI CCWGG 2 cut(s) 7, 290
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 6 cut(s) 31, 141, 185, 620, 743, 845
AluI AGCT 6 cut(s) 31, 141, 185, 620, 743, 845
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 2 cut(s) 326, 752
AlwI GGATC 2 cut(s) 12, 68
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 133, 298
ApaI GGGCCC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 737, 740
Asp700I GAANNNNTTC 1 cut(s) 456
AspLEI GCGC 2 cut(s) 147, 770
AspS9I GGNCC 5 cut(s) 155, 287, 298, 299, 782
AsuC2I CCSGG 1 cut(s) 863
AvaII GGWCC 3 cut(s) 155, 287, 782
BaeGI GKGCMC 1 cut(s) 302
BalI TGGCCA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 724, 752
BciT130I CCWGG 2 cut(s) 9, 292
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 2 cut(s) 326, 752
BfaI CTAG 3 cut(s) 65, 672, 801
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 2 cut(s) 143, 547
BisI GCNGC 2 cut(s) 738, 741
BlsI GCNGC 2 cut(s) 739, 742
BmcAI AGTACT 1 cut(s) 498
Bme1390I CCNGG 3 cut(s) 9, 292, 863
Bme18I GGWCC 3 cut(s) 155, 287, 782
BmgT120I GGNCC 5 cut(s) 155, 287, 298, 299, 782
BmiI GGNNCC 4 cut(s) 6, 289, 299, 300
BmrFI CCNGG 3 cut(s) 9, 292, 863
BmrI ACTGGG 1 cut(s) 672
BmsI GCATC 5 cut(s) 51, 386, 720, 724, 867
BmuI ACTGGG 1 cut(s) 672
BplI GAGNNNNNCTC 2 cut(s) 218, 250
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 863
BsaBI GATNNNNATC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 8, 219, 290
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 171, 251, 296, 552
Bse1I ACTGG 3 cut(s) 256, 667, 784
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 398
BseBI CCWGG 2 cut(s) 9, 292
BseDI CCNNGG 3 cut(s) 8, 219, 290
BseGI GGATG 2 cut(s) 399, 858
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 5 cut(s) 131, 171, 251, 296, 552
BseMI GCAATG 1 cut(s) 386
BseMII CTCAG 6 cut(s) 41, 216, 377, 645, 698, 744
BseNI ACTGG 3 cut(s) 256, 667, 784
BseRI GAGGAG 3 cut(s) 67, 226, 770
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 2 cut(s) 724, 752
BshFI GGCC 2 cut(s) 135, 300
BsiHKAI GWGCWC 1 cut(s) 364
BsiSI CCGG 1 cut(s) 862
BslI CCNNNNNNNGG 5 cut(s) 131, 171, 251, 296, 552
BsmAI GTCTC 2 cut(s) 326, 752
BsmBI CGTCTC 1 cut(s) 752
BsnI GGCC 2 cut(s) 135, 300
Bso31I GGTCTC 1 cut(s) 326
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 302, 364
Bsp143I GATC 3 cut(s) 4, 73, 396
Bsp19I CCATGG 1 cut(s) 219
BspANI GGCC 2 cut(s) 135, 300
BspCNI CTCAG 6 cut(s) 42, 217, 376, 646, 699, 745
BspLI GGNNCC 4 cut(s) 6, 289, 299, 300
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 2 cut(s) 143, 547
BspPI GGATC 2 cut(s) 12, 68
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 3 cut(s) 256, 667, 784
BssECI CCNNGG 3 cut(s) 8, 219, 290
BssMI GATC 3 cut(s) 4, 73, 396
BssT1I CCWWGG 1 cut(s) 219
Bst2UI CCWGG 2 cut(s) 9, 292
Bst4CI ACNGT 2 cut(s) 615, 728
BstAPI GCANNNNNTGC 2 cut(s) 158, 359
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 6 cut(s) 50, 225, 363, 654, 707, 753
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 399, 858
BstHHI GCGC 2 cut(s) 147, 770
BstKTI GATC 3 cut(s) 7, 76, 399
BstMAI GTCTC 2 cut(s) 326, 752
BstMBI GATC 3 cut(s) 4, 73, 396
BstMWI GCNNNNNNNGC 4 cut(s) 158, 359, 374, 383
BstNI CCWGG 2 cut(s) 9, 292
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 3 cut(s) 7, 290, 861
BstSFI CTRYAG 1 cut(s) 738
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 724, 752
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 284
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 135, 300
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 399, 858
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 249, 693, 825
BveI ACCTGC 2 cut(s) 143, 547
Cac8I GCNNGC 1 cut(s) 143
CaiI CAGNNNCTG 1 cut(s) 158
CfoI GCGC 2 cut(s) 147, 770
Cfr13I GGNCC 5 cut(s) 155, 287, 298, 299, 782
CseI GACGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 120, 497, 560
CviAII CATG 4 cut(s) 99, 201, 220, 466
CviQI GTAC 3 cut(s) 120, 497, 560
DdeI CTNAG 6 cut(s) 50, 225, 363, 654, 707, 753
DpnI GATC 3 cut(s) 6, 75, 398
DpnII GATC 3 cut(s) 4, 73, 396
DrdI GACNNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 326
Eco32I GATATC 2 cut(s) 348, 669
Eco47I GGWCC 3 cut(s) 155, 287, 782
EcoO109I RGGNCCY 2 cut(s) 155, 298
EcoRII CCWGG 2 cut(s) 7, 290
EcoRV GATATC 2 cut(s) 348, 669
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 219
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 4 cut(s) 102, 204, 223, 469
FatI CATG 4 cut(s) 98, 200, 219, 465
FauNDI CATATG 2 cut(s) 488, 548
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 659
Fnu4HI GCNGC 2 cut(s) 738, 741
FokI GGATG 2 cut(s) 386, 845
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 2 cut(s) 738, 741
FspBI CTAG 3 cut(s) 65, 672, 801
GlaI GCGC 2 cut(s) 146, 769
GluI GCNGC 2 cut(s) 738, 741
HaeIII GGCC 2 cut(s) 135, 300
HapII CCGG 1 cut(s) 862
HgaI GACGC 1 cut(s) 8
HhaI GCGC 2 cut(s) 147, 770
Hin1II CATG 4 cut(s) 102, 204, 223, 469
Hin6I GCGC 2 cut(s) 145, 768
HinP1I GCGC 2 cut(s) 145, 768
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 68, 656
HpaII CCGG 1 cut(s) 862
Hpy166II GTNNAC 2 cut(s) 122, 660
Hpy188I TCNGA 3 cut(s) 24, 73, 708
Hpy188III TCNNGA 2 cut(s) 653, 873
Hpy8I GTNNAC 2 cut(s) 122, 660
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 2 cut(s) 615, 728
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 359, 374, 383
HpyF3I CTNAG 6 cut(s) 50, 225, 363, 654, 707, 753
Hsp92II CATG 4 cut(s) 102, 204, 223, 469
HspAI GCGC 2 cut(s) 145, 768
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 3 cut(s) 4, 73, 396
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 724, 752
LweI GCATC 5 cut(s) 51, 386, 720, 724, 867
MaeI CTAG 3 cut(s) 65, 672, 801
MaeIII GTNAC 1 cut(s) 187
MalI GATC 3 cut(s) 6, 75, 398
MboI GATC 3 cut(s) 4, 73, 396
MboII GAAGA 2 cut(s) 187, 695
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 302, 364
MlsI TGGCCA 1 cut(s) 135
MluCI AATT 1 cut(s) 540
MluNI TGGCCA 1 cut(s) 135
MlyI GAGTC 2 cut(s) 77, 665
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 7 cut(s) 45, 48, 135, 247, 425, 603, 748
Mox20I TGGCCA 1 cut(s) 135
Mph1103I ATGCAT 1 cut(s) 104
MroXI GAANNNNTTC 1 cut(s) 456
MscI TGGCCA 1 cut(s) 135
MseI TTAA 2 cut(s) 167, 632
MslI CAYNNNNRTG 1 cut(s) 470
Msp20I TGGCCA 1 cut(s) 135
MspI CCGG 1 cut(s) 862
MspR9I CCNGG 3 cut(s) 9, 292, 863
MvaI CCWGG 2 cut(s) 9, 292
MwoI GCNNNNNNNGC 4 cut(s) 158, 359, 374, 383
NciI CCSGG 1 cut(s) 863
NcoI CCATGG 1 cut(s) 219
NdeI CATATG 2 cut(s) 488, 548
NdeII GATC 3 cut(s) 4, 73, 396
NlaIII CATG 4 cut(s) 102, 204, 223, 469
NlaIV GGNNCC 4 cut(s) 6, 289, 299, 300
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 456
PflFI GACNNNGTC 1 cut(s) 613
PflMI CCANNNNNTGG 2 cut(s) 251, 552
PkrI GCNGC 2 cut(s) 739, 742
PleI GAGTC 2 cut(s) 76, 664
PpsI GAGTC 2 cut(s) 76, 664
PpuMI RGGWCCY 1 cut(s) 155
PsiI TTATAA 2 cut(s) 39, 584
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 2 cut(s) 7, 290
PspGI CCWGG 2 cut(s) 7, 290
PspN4I GGNNCC 4 cut(s) 6, 289, 299, 300
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 5 cut(s) 155, 287, 298, 299, 782
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 613
RsaI GTAC 3 cut(s) 121, 498, 561
RsaNI GTAC 3 cut(s) 120, 497, 560
RseI CAYNNNNRTG 1 cut(s) 470
SalI GTCGAC 1 cut(s) 658
SaqAI TTAA 2 cut(s) 167, 632
SatI GCNGC 2 cut(s) 738, 741
Sau3AI GATC 3 cut(s) 4, 73, 396
Sau96I GGNCC 5 cut(s) 155, 287, 298, 299, 782
ScaI AGTACT 1 cut(s) 498
SchI GAGTC 2 cut(s) 77, 665
ScrFI CCNGG 3 cut(s) 9, 292, 863
SduI GDGCHC 2 cut(s) 302, 364
SfaNI GCATC 5 cut(s) 51, 386, 720, 724, 867
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 3 cut(s) 155, 287, 782
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 1 cut(s) 540
SspMI CTAG 3 cut(s) 65, 672, 801
StyD4I CCNGG 3 cut(s) 7, 290, 861
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 615, 728
TaqI TCGA 1 cut(s) 659
TasI AATT 1 cut(s) 540
TatI WGTACW 1 cut(s) 496
Tru1I TTAA 2 cut(s) 167, 632
Tru9I TTAA 2 cut(s) 167, 632
TscAI CASTG 3 cut(s) 256, 693, 825
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 737, 740
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 3 cut(s) 256, 693, 825
Tth111I GACNNNGTC 1 cut(s) 613
Van91I CCANNNNNTGG 2 cut(s) 251, 552
VpaK11BI GGWCC 3 cut(s) 155, 287, 782
XceI RCATGY 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 65, 672, 801
ZrmI AGTACT 1 cut(s) 498
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.