FvH4_2g27770

Amino-acid permease BAT1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001248
Physical Location & Seq
Forward (+)
21959784 .. 21962699
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27770.t1

Sequence Viewer

Length: 1542 bp
ATGGATTCTGGAGAAAAGCGTCTGAATGAGCTTGGTTATAAGCAAGAACTGAGGAGGGAAATGACTCTGTTCAAGACTCTGGCAATAACCTTTTCATGCGTATCAGTATTTGCTGGTACACCTCTCTACGGCCAAAGCTTGCGCTACGCAGGTCCTGCAACCTTAATATGGGGTTGGGTAGCTGTCACATTCTTCACATGGTTTGTTGCAATCGCCATGGCTGAGATTTGCTCTTCTTTCCCAACCACCGGCTCTCTCTACTTTTGGGCTGCACATTTGGCAGCGCCGAGGTGGGGGCCGTTTGCTTCGTGGTGCTGTGCTTGGCTTGAGACCATTGGCGTGATATCTGCAATAGGTGCTCAGGCGTATTCTGCATCACAAGCATTGCAGATGATCATTCTTATAGCCACAGGAACAAACAAAGGTGGAGGCTATTTTGCACCAAAAGAAGTTTTTTTGTGCATGTATGTGGGTCTAATTATCATATGGGCAGTACTAAACACATTTGCCCTGCAAGTGATAGCATATCTCAACATAATTTCCATATGGTGGCAGGTAATTGGGGGTTTGCTTGTGATTATAATGCTTCCTCTGGTGGCAAAGACAACACAATCAGATTCTTATGTATTCACTCATTTTGAGACTTCTCCTGAGTCAACTGGGATATCTAGCATACCTTATTCAGTGATTTTATCAATCCTTCTGAGTATCTACTCTCTATATGGTTATGATGCTGCAGCTCATCTTACTGAGGAGACAAAAGGCGCAGATAGAACTGGTCCTATAGCCATTCTATCTAGTCTTGGGATTATATCGGTGCTTGGTTGGGCTTATTATATAGCTCTCACGTTCAGCATCCAGGATGTGGACTATTTGTACAATGTAGACAATGAGACTGCTGGAGCACTTGTACCAGCACAGATAATATATGAAGCATTCTATGGGAGGTTTCATAATTCAAAGGGAGCTGTGGCTTTCCTATGTATCATCTGGGGTTCCTACTTCTTTTGTGGGTTGTCAGTTATCACCACCGCTGCCCGAGTAGTTTATGCTCTATCAAGGGATAATGGCATCCCCTTTTCACCAATTTGGAGGAAGGTGCACCCTAGAAGCAAGGTGCCAACAAATGCAGTGTGGCTCTGCGCAGCCATCGGTATCCTGCTAGGATTACCCATCTTAAAACTTGACTTGGTATTCACAGCCATCATTTCAGTTAGTACAATTGGGTGGGTCGGTAGTTATGCAGTTCCTATTTTTGCTAGGCTGGTGATCGCTGAAGAGAAATTTAGAGCAGGACCCTTCTATTTGGGCAGAGCAAGCAGGCCAGTTTGCTTTGTGGCCTTTGTGTGGATATGCTATGCATGTTCTACCTTCTTATTGCCAACTTTCTATCCTCGTACATGGAAAACTTTCAATTATGCACCAATTGCTCTCAGTGTTGTTTTGACACTGATAATGCTTTGGTGGGTTTTGGATGCAAGAAAATGGTTCAAAGGACCTGTGAGAAACATTGATGTACAAGAGGGGAACTATGAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AA_permease_2

Protein Analysis

514

Amino Acids

56.84

Weight (kDa)

8.37

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 23 - 479 3.1e-53 Amino acid permease
AA_permease PF00324 44 - 498 3e-20 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 581
Acc16I TGCGCA 1 cut(s) 1144
Acc36I ACCTGC 2 cut(s) 140, 544
AccB1I GGYRCC 1 cut(s) 1117
AccB7I CCANNNNNTGG 2 cut(s) 549, 865
AccI GTMKAC 1 cut(s) 885
AciI CCGC 1 cut(s) 1032
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 1283
AcuI CTGAAG 1 cut(s) 1296
AfaI GTAC 7 cut(s) 118, 495, 878, 912, 1219, 1399, 1518
AfiI CCNNNNNNNGG 7 cut(s) 128, 168, 248, 293, 549, 865, 1347
AgsI TTSAA 4 cut(s) 73, 960, 1414, 1492
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 6 cut(s) 31, 138, 182, 740, 842, 968
AluI AGCT 6 cut(s) 31, 138, 182, 740, 842, 968
Alw21I GWGCWC 3 cut(s) 361, 907, 1104
Alw26I GTCTC 4 cut(s) 323, 635, 749, 887
Alw44I GTGCAC 1 cut(s) 1100
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 1038
AoxI GGCC 4 cut(s) 130, 296, 1322, 1338
ApaLI GTGCAC 1 cut(s) 1100
ApeKI GCWGC 6 cut(s) 269, 281, 734, 737, 1034, 1145
ApoI RAATTY 1 cut(s) 1283
Asp700I GAANNNNTTC 1 cut(s) 1409
AspLEI GCGC 4 cut(s) 144, 286, 767, 1145
AspS9I GGNCC 5 cut(s) 152, 296, 779, 1295, 1496
AsuHPI GGTGA 3 cut(s) 1018, 1074, 1279
AvaI CYCGRG 1 cut(s) 1038
AvaII GGWCC 4 cut(s) 152, 779, 1295, 1496
BaeGI GKGCMC 1 cut(s) 1104
BanI GGYRCC 1 cut(s) 1117
Bbv12I GWGCWC 3 cut(s) 361, 907, 1104
BbvI GCAGC 6 cut(s) 256, 293, 721, 749, 1021, 1157
BccI CCATC 3 cut(s) 1157, 1181, 1211
BceAI ACGGC 2 cut(s) 145, 283
BciT130I CCWGG 1 cut(s) 860
BciVI GTATCC 1 cut(s) 1166
BclI TGATCA 1 cut(s) 393
BcoDI GTCTC 4 cut(s) 323, 635, 749, 887
BfaI CTAG 5 cut(s) 669, 798, 1107, 1163, 1260
BfmI CTRYAG 2 cut(s) 735, 783
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 140, 544
BfuI GTATCC 1 cut(s) 1166
BisI GCNGC 6 cut(s) 270, 282, 735, 738, 1035, 1146
BlsI GCNGC 6 cut(s) 271, 283, 736, 739, 1036, 1147
BmcAI AGTACT 1 cut(s) 495
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 4 cut(s) 152, 779, 1295, 1496
BmeT110I CYCGRG 1 cut(s) 1038
BmgT120I GGNCC 5 cut(s) 152, 296, 779, 1295, 1496
BmiI GGNNCC 4 cut(s) 297, 997, 1119, 1297
BmrFI CCNGG 1 cut(s) 860
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 5 cut(s) 383, 721, 864, 1080, 1465
BmuI ACTGGG 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 2 cut(s) 30, 921
Bpu10I CCTNAGC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 216, 287
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 7 cut(s) 128, 168, 248, 293, 549, 865, 1347
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 3 cut(s) 664, 781, 1325
Bse3DI GCAATG 1 cut(s) 383
BseBI CCWGG 1 cut(s) 860
BseDI CCNNGG 2 cut(s) 216, 287
BseGI GGATG 4 cut(s) 855, 868, 1071, 1480
BseLI CCNNNNNNNGG 7 cut(s) 128, 168, 248, 293, 549, 865, 1347
BseMI GCAATG 1 cut(s) 383
BseMII CTCAG 7 cut(s) 41, 213, 374, 642, 695, 741, 1447
BseNI ACTGG 3 cut(s) 664, 781, 1325
BseRI GAGGAG 2 cut(s) 67, 767
BseSI GKGCMC 1 cut(s) 1104
BseXI GCAGC 6 cut(s) 256, 293, 721, 749, 1021, 1157
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 4 cut(s) 132, 298, 1324, 1340
BshNI GGYRCC 1 cut(s) 1117
BsiHKAI GWGCWC 3 cut(s) 361, 907, 1104
BsiHKCI CYCGRG 1 cut(s) 1038
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 7 cut(s) 128, 168, 248, 293, 549, 865, 1347
BsmAI GTCTC 4 cut(s) 323, 635, 749, 887
BsmI GAATGC 1 cut(s) 935
BsnI GGCC 4 cut(s) 132, 298, 1324, 1340
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 361, 907, 1104
Bsp1407I TGTACA 2 cut(s) 876, 1516
Bsp143I GATC 2 cut(s) 393, 1269
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 1032
BspANI GGCC 4 cut(s) 132, 298, 1324, 1340
BspCNI CTCAG 7 cut(s) 42, 214, 373, 643, 696, 742, 1446
BspLI GGNNCC 4 cut(s) 297, 997, 1119, 1297
BspMAI CTGCAG 1 cut(s) 739
BspMI ACCTGC 2 cut(s) 140, 544
BspQI GCTCTTC 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 1117
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 248
BsrGI TGTACA 2 cut(s) 876, 1516
BsrI ACTGG 3 cut(s) 664, 781, 1325
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 216, 287
BssMI GATC 2 cut(s) 393, 1269
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 860
Bst6I CTCTTC 2 cut(s) 238, 1272
BstAPI GCANNNNNTGC 3 cut(s) 155, 356, 1427
BstAUI TGTACA 2 cut(s) 876, 1516
BstC8I GCNNGC 3 cut(s) 140, 1318, 1322
BstDEI CTNAG 7 cut(s) 50, 222, 360, 651, 704, 750, 1433
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 855, 868, 1071, 1480
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 4 cut(s) 144, 286, 767, 1145
BstKTI GATC 2 cut(s) 396, 1272
BstMAI GTCTC 4 cut(s) 323, 635, 749, 887
BstMBI GATC 2 cut(s) 393, 1269
BstMWI GCNNNNNNNGC 7 cut(s) 155, 278, 356, 371, 380, 1317, 1427
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 2 cut(s) 466, 1365
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 2 cut(s) 735, 783
BstSLI GKGCMC 1 cut(s) 1104
BstV1I GCAGC 6 cut(s) 256, 293, 721, 749, 1021, 1157
BsuI GTATCC 1 cut(s) 1166
BsuRI GGCC 4 cut(s) 132, 298, 1324, 1340
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 855, 868, 1071, 1480
BtsI GCAGTG 1 cut(s) 1137
BtsIMutI CAGTG 4 cut(s) 690, 1137, 1441, 1448
BveI ACCTGC 2 cut(s) 140, 544
Cac8I GCNNGC 3 cut(s) 140, 1318, 1322
CaiI CAGNNNCTG 1 cut(s) 155
CfoI GCGC 4 cut(s) 144, 286, 767, 1145
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 5 cut(s) 152, 296, 779, 1295, 1496
CseI GACGC 1 cut(s) 8
Csp6I GTAC 7 cut(s) 117, 494, 877, 911, 1218, 1398, 1517
CviAII CATG 6 cut(s) 96, 198, 217, 463, 1362, 1401
CviQI GTAC 7 cut(s) 117, 494, 877, 911, 1218, 1398, 1517
DdeI CTNAG 7 cut(s) 50, 222, 360, 651, 704, 750, 1433
DpnI GATC 2 cut(s) 395, 1271
DpnII GATC 2 cut(s) 393, 1269
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 2 cut(s) 238, 1272
EarI CTCTTC 2 cut(s) 238, 1272
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 323
Eco32I GATATC 2 cut(s) 345, 666
Eco47I GGWCC 4 cut(s) 152, 779, 1295, 1496
Eco57I CTGAAG 1 cut(s) 1296
Eco88I CYCGRG 1 cut(s) 1038
EcoO109I RGGNCCY 3 cut(s) 152, 1295, 1496
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 2 cut(s) 345, 666
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 1363
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 6 cut(s) 99, 201, 220, 466, 1365, 1404
FatI CATG 6 cut(s) 95, 197, 216, 462, 1361, 1400
FauNDI CATATG 2 cut(s) 485, 545
FbaI TGATCA 1 cut(s) 393
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 6 cut(s) 270, 282, 735, 738, 1035, 1146
FokI GGATG 4 cut(s) 842, 875, 1058, 1487
Fsp4HI GCNGC 6 cut(s) 270, 282, 735, 738, 1035, 1146
FspBI CTAG 5 cut(s) 669, 798, 1107, 1163, 1260
FspI TGCGCA 1 cut(s) 1144
GlaI GCGC 4 cut(s) 143, 285, 766, 1144
GluI GCNGC 6 cut(s) 270, 282, 735, 738, 1035, 1146
GsuI CTGGAG 2 cut(s) 30, 921
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 4 cut(s) 132, 298, 1324, 1340
HapII CCGG 1 cut(s) 249
HgaI GACGC 1 cut(s) 8
HhaI GCGC 4 cut(s) 144, 286, 767, 1145
Hin1II CATG 6 cut(s) 99, 201, 220, 466, 1365, 1404
Hin6I GCGC 4 cut(s) 142, 284, 765, 1143
HinP1I GCGC 4 cut(s) 142, 284, 765, 1143
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 5 cut(s) 5, 64, 76, 617, 653
HpaII CCGG 1 cut(s) 249
HphI GGTGA 3 cut(s) 1018, 1074, 1279
Hpy166II GTNNAC 5 cut(s) 119, 657, 868, 886, 1102
Hpy188I TCNGA 3 cut(s) 24, 616, 705
Hpy188III TCNNGA 3 cut(s) 9, 73, 650
Hpy8I GTNNAC 5 cut(s) 119, 657, 868, 886, 1102
HpyAV CCTTC 4 cut(s) 710, 1090, 1309, 1381
HpyCH4IV ACGT 1 cut(s) 848
HpyF10VI GCNNNNNNNGC 7 cut(s) 155, 278, 356, 371, 380, 1317, 1427
HpyF3I CTNAG 7 cut(s) 50, 222, 360, 651, 704, 750, 1433
HpySE526I ACGT 1 cut(s) 848
Hsp92II CATG 6 cut(s) 99, 201, 220, 466, 1365, 1404
HspAI GCGC 4 cut(s) 142, 284, 765, 1143
Ksp22I TGATCA 1 cut(s) 393
Kzo9I GATC 2 cut(s) 393, 1269
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 2 cut(s) 902, 965
Lsp1109I GCAGC 6 cut(s) 256, 293, 721, 749, 1021, 1157
LweI GCATC 5 cut(s) 383, 721, 864, 1080, 1465
MaeI CTAG 5 cut(s) 669, 798, 1107, 1163, 1260
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 1 cut(s) 184
MalI GATC 2 cut(s) 395, 1271
MboI GATC 2 cut(s) 393, 1269
MboII GAAGA 3 cut(s) 184, 225, 1289
MfeI CAATTG 2 cut(s) 1221, 1425
MhlI GDGCHC 3 cut(s) 361, 907, 1104
MluCI AATT 9 cut(s) 477, 537, 558, 955, 1086, 1221, 1283, 1414, 1425
MlyI GAGTC 3 cut(s) 58, 70, 662
Mph1103I ATGCAT 1 cut(s) 1363
MroXI GAANNNNTTC 1 cut(s) 1409
MseI TTAA 3 cut(s) 164, 1178, 1540
MslI CAYNNNNRTG 2 cut(s) 338, 467
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 860
MunI CAATTG 2 cut(s) 1221, 1425
Mva1269I GAATGC 1 cut(s) 935
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 7 cut(s) 155, 278, 356, 371, 380, 1317, 1427
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 2 cut(s) 485, 545
NdeII GATC 2 cut(s) 393, 1269
NlaIII CATG 6 cut(s) 99, 201, 220, 466, 1365, 1404
NlaIV GGNNCC 4 cut(s) 297, 997, 1119, 1297
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 1 cut(s) 184
NsbI TGCGCA 1 cut(s) 1144
NsiI ATGCAT 1 cut(s) 1363
NspI RCATGY 2 cut(s) 466, 1365
PciSI GCTCTTC 1 cut(s) 238
PctI GAATGC 1 cut(s) 935
PdmI GAANNNNTTC 1 cut(s) 1409
PfeI GAWTC 2 cut(s) 5, 617
PflMI CCANNNNNTGG 2 cut(s) 549, 865
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 6 cut(s) 271, 283, 736, 739, 1036, 1147
PleI GAGTC 3 cut(s) 58, 70, 661
PpsI GAGTC 3 cut(s) 58, 70, 661
PpuMI RGGWCCY 3 cut(s) 152, 1295, 1496
PsiI TTATAA 2 cut(s) 39, 581
Psp5II RGGWCCY 3 cut(s) 152, 1295, 1496
Psp6I CCWGG 1 cut(s) 858
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 4 cut(s) 297, 997, 1119, 1297
PspPI GGNCC 5 cut(s) 152, 296, 779, 1295, 1496
PspPPI RGGWCCY 3 cut(s) 152, 1295, 1496
PstI CTGCAG 1 cut(s) 739
PstNI CAGNNNCTG 1 cut(s) 155
RsaI GTAC 7 cut(s) 118, 495, 878, 912, 1219, 1399, 1518
RsaNI GTAC 7 cut(s) 117, 494, 877, 911, 1218, 1398, 1517
RseI CAYNNNNRTG 2 cut(s) 338, 467
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 3 cut(s) 164, 1178, 1540
SatI GCNGC 6 cut(s) 270, 282, 735, 738, 1035, 1146
Sau3AI GATC 2 cut(s) 393, 1269
Sau96I GGNCC 5 cut(s) 152, 296, 779, 1295, 1496
ScaI AGTACT 1 cut(s) 495
SchI GAGTC 3 cut(s) 58, 70, 662
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 3 cut(s) 361, 907, 1104
SfaNI GCATC 5 cut(s) 383, 721, 864, 1080, 1465
SfcI CTRYAG 2 cut(s) 735, 783
SinI GGWCC 4 cut(s) 152, 779, 1295, 1496
SmiMI CAYNNNNRTG 2 cut(s) 338, 467
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 9 cut(s) 477, 537, 558, 955, 1086, 1221, 1283, 1414, 1425
SsiI CCGC 1 cut(s) 1032
SspMI CTAG 5 cut(s) 669, 798, 1107, 1163, 1260
StyD4I CCNGG 1 cut(s) 858
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 851
TasI AATT 9 cut(s) 477, 537, 558, 955, 1086, 1221, 1283, 1414, 1425
TatI WGTACW 4 cut(s) 493, 876, 1217, 1516
TfiI GAWTC 2 cut(s) 5, 617
Tru1I TTAA 3 cut(s) 164, 1178, 1540
Tru9I TTAA 3 cut(s) 164, 1178, 1540
TscAI CASTG 4 cut(s) 690, 1137, 1441, 1455
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 6 cut(s) 269, 281, 734, 737, 1034, 1145
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 84, 941, 945
TspRI CASTG 4 cut(s) 690, 1137, 1441, 1455
Van91I CCANNNNNTGG 2 cut(s) 549, 865
VneI GTGCAC 1 cut(s) 1100
VpaK11BI GGWCC 4 cut(s) 152, 779, 1295, 1496
XapI RAATTY 1 cut(s) 1283
XceI RCATGY 2 cut(s) 466, 1365
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 1409
XspI CTAG 5 cut(s) 669, 798, 1107, 1163, 1260
ZrmI AGTACT 1 cut(s) 495
Zsp2I ATGCAT 1 cut(s) 1363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.