Rroxscaffold_7G00171300

Amino-acid permease BAT1 homolog

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
11635031 .. 11635551
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171300.1

Sequence Viewer

Length: 435 bp
ATGCAGGATTTGGACTATTTATATAGTACAAACAATGAGACTGCTGGTGTATATGCGCCAGCACAGATTATATACGATGCATTCCATGGAAGGTATCAGAATTCAACTGGAGCTGTGGTATTTCTATGCATTATATGGGGTTCCTTTTTCTTTTGTGGGCTGTCTGTTGTCACTAGTGCTGCTCGAGTAGTTTATGCCATATCAAGGGATAAATGTATCCCATTTTCACCTATCTGGAGGAAAGTAAACCCGAGGAACAAGGTTCCAACAAATGCTGTGTGGCTTTGTGCTACCATTGGTATGCTGCTTGGATTACCTATCTTGAAAATTGAAGCAGTATTCACAGCCATTGTTACCTACCCTCTTAGGTGGAAAAATTTCAACTATGCACCAGTTGCTGTCTGTGTTGCTTTGGCACTAGTAATGTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.14

Weight (kDa)

9.06

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_permease_2 PF13520 12 - 119 5.1e-16 Amino acid permease
AA_permease PF00324 34 - 115 7.1e-08 Amino acid permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 100, 376
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 4 cut(s) 105, 325, 332, 382
AhlI ACTAGT 2 cut(s) 173, 418
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 32
AlwNI CAGNNNCTG 1 cut(s) 398
Ama87I CYCGRG 2 cut(s) 183, 250
ApeKI GCWGC 2 cut(s) 179, 304
ApoI RAATTY 2 cut(s) 100, 376
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 219
AvaI CYCGRG 2 cut(s) 183, 250
BbvI GCAGC 2 cut(s) 166, 291
BciVI GTATCC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 32
BcuI ACTAGT 2 cut(s) 173, 418
BfaI CTAG 2 cut(s) 174, 419
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 180, 305
BlsI GCNGC 2 cut(s) 181, 306
BmeT110I CYCGRG 2 cut(s) 183, 250
BmiI GGNNCC 2 cut(s) 142, 264
BmsI GCATC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 129, 256
BsaJI CCNNGG 2 cut(s) 85, 251
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse1I ACTGG 2 cut(s) 112, 392
BseDI CCNNGG 2 cut(s) 85, 251
BseLI CCNNNNNNNGG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 112, 392
BseXI GCAGC 2 cut(s) 166, 291
BsiHKCI CYCGRG 2 cut(s) 183, 250
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 183, 250
Bsp19I CCATGG 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 142, 264
BsrI ACTGG 2 cut(s) 112, 392
BssECI CCNNGG 2 cut(s) 85, 251
BssT1I CCWWGG 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 166, 291
BsuI GTATCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 398
CfoI GCGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 86
CviJI RGCY 4 cut(s) 113, 160, 283, 347
CviKI_1 RGCY 4 cut(s) 113, 160, 283, 347
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 85
Eco88I CYCGRG 2 cut(s) 183, 250
EcoRI GAATTC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 82, 131
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 1 cut(s) 89
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 180, 305
Fsp4HI GCNGC 2 cut(s) 180, 305
FspBI CTAG 2 cut(s) 174, 419
GlaI GCGC 1 cut(s) 57
GluI GCNGC 2 cut(s) 180, 305
GsuI CTGGAG 2 cut(s) 129, 256
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HphI GGTGA 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 235, 322
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 4 cut(s) 4, 80, 129, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 5 cut(s) 30, 72, 93, 220, 405
Lsp1109I GCAGC 2 cut(s) 166, 291
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 174, 419
MaeIII GTNAC 2 cut(s) 169, 352
MluCI AATT 3 cut(s) 100, 327, 376
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 3 cut(s) 231, 246, 372
Mph1103I ATGCAT 2 cut(s) 82, 131
MroXI GAANNNNTTC 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 395
NcoI CCATGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 142, 264
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 2 cut(s) 82, 131
PaeR7I CTCGAG 1 cut(s) 183
PctI GAATGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 377
PkrI GCNGC 2 cut(s) 181, 306
PspN4I GGNNCC 2 cut(s) 142, 264
PspXI VCTCGAGB 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 2 cut(s) 180, 305
SetI ASST 7 cut(s) 95, 115, 232, 264, 319, 359, 371
SfaNI GCATC 1 cut(s) 67
Sfr274I CTCGAG 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
SpeI ACTAGT 2 cut(s) 173, 418
Sse9I AATT 3 cut(s) 100, 327, 376
SspMI CTAG 2 cut(s) 174, 419
StyI CCWWGG 1 cut(s) 85
TaqI TCGA 1 cut(s) 184
TasI AATT 3 cut(s) 100, 327, 376
TatI WGTACW 1 cut(s) 26
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 2 cut(s) 179, 304
Tsp45I GTSAC 1 cut(s) 169
XapI RAATTY 2 cut(s) 100, 376
XhoI CTCGAG 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 174, 419
Zsp2I ATGCAT 2 cut(s) 82, 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.