FvH4_2g13600

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001325
Physical Location & Seq
Reverse (-)
11870934 .. 11875173
4240 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13600.t2

Sequence Viewer

Length: 1380 bp
ATGGAGGGTGGAGGGAACCGTGGGACTAATGACTCTGAACTCAGAGCAAGAGTATCGATCGATATAACAAGAAGTGCCAGTTCTTCATTAAGGTTTCTCTCTTTAAGTTCATTAGGTGCTCATTCATCTCAAGTAGATGATGAAACTGAAAGTGAGAGTGTGTCAGAGGTGGGAGATATTGGGGATCGAGCTCTTCACAGCAACAGGTACAGTGCAAGTGGCAGTTTCAACTTCTTGTCTGCAGAGGATATGAAATTGCAATCCTATGGATTCTGGGGTCGTGATCCTGCTGCATCTCATGCAATCTCCACGGTATCGCCTTTGCCAGAGCAAATCATTTCTCCCCTGTCAGCTAATGCAATAGTATGCAACGAGGAGAAAAACCAAGCAAGTACAGCAAGAATACCAAAATTGTTGGAGTATGGTTCATGTATGACTCATCTAGCCGTCTTTGGCATTTTAGGGGTCTTAACGAGATATCTACTGCAAAAATTGTTCGGCCCTGGAGTTGCAGGTGTGACAAGTGACCAAACAGTTCTCTACCTTGACCTTCCTTCTAATATGGTTGGCTCCTTCTTGATGGGATGGTTTGGTGTTGTTTTCAAAGCAGATATATCACATAGGTCAGAATTTTTGGCAATTGGATTGACAACTGGTTACCTGGGAAGTGTTACAACTTTTAGTGGTTGGAACCAGAAAATGCTTGAACTGAGTGTTGAAGGCCATTGGGTTTTTGCTGGTCTCGGTTTTTTGATAGGACTGTTTCTAGCTGCCTACTCCATCATTTTTGGGGTAGAGACATCCAAGCTTTGTAGGCAGCTTCTTGTAAGGAGTTCAGGGTCTGGCAGTGCTAGCTCTGAAAAGAGCTGGAGGGTTGACAACACCAAGCGTCACTTGACAGTTTTGGCATTGTTTCTGCTCTTGCTAGCTGGATTATGGAGTATGAGTGGAATATTGATGAGGCAGGAGTTTAACAGAAAAAGCAGTGAGACACAACTATGGTTGGCTTGCATCGTTGGACCTCTAGGTGTCTGGATCAGGTGGTTCTTAGCTCGACTCAATGGACGTGGATTAGGAAAGACAGGGTTTTTGAAATGGATTCCATTCGGTACTCTAATTGCTAATGTTTCTGCAGCTTGTATCATGGCGGCACTTGCTACTGTGAAGAAAGGGGTAAATTCCAATACTTGCGATATTGTTGCAACAGGCATACAATTTGGATTTTTGGGTTGCCTTAGTACTGTATCTACTTTCATTGCTGAGTTTAATGCAATGAGAGAAAGTAAATACCCCTGGAGAGCATACATATACGCCTTAGTCACCATTCTCACCTCATTCTGTTTGGGGACCCTGATATATTCTGTACCTGTTTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

460

Amino Acids

49.82

Weight (kDa)

8.56

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 148 - 265 3.6e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 335 - 448 4.3e-17 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 503
AciI CCGC 1 cut(s) 1148
AclWI GGATC 3 cut(s) 192, 278, 1043
AcsI RAATTY 2 cut(s) 629, 1177
AfaI GTAC 5 cut(s) 209, 394, 1111, 1240, 1365
AgsI TTSAA 5 cut(s) 229, 604, 707, 719, 1093
AjiI CACGTC 1 cut(s) 1067
AjnI CCWGG 3 cut(s) 502, 660, 1292
Alw21I GWGCWC 2 cut(s) 121, 193
Alw26I GTCTC 3 cut(s) 746, 791, 983
AlwI GGATC 3 cut(s) 192, 278, 1043
AlwNI CAGNNNCTG 1 cut(s) 842
AoxI GGCC 2 cut(s) 499, 721
ApeKI GCWGC 4 cut(s) 290, 770, 817, 1133
ApoI RAATTY 2 cut(s) 629, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 1072, 1104
AspS9I GGNCC 3 cut(s) 500, 1019, 1347
AsuHPI GGTGA 2 cut(s) 1312, 1321
AsuNHI GCTAGC 2 cut(s) 851, 925
AvaII GGWCC 2 cut(s) 1019, 1347
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 2 cut(s) 121, 193
BbvI GCAGC 4 cut(s) 277, 757, 829, 1145
BccI CCATC 3 cut(s) 574, 579, 788
BceAI ACGGC 1 cut(s) 431
BcgI CGANNNNNNTGC 4 cut(s) 36, 70, 1181, 1215
BciT130I CCWGG 3 cut(s) 504, 662, 1294
BcoDI GTCTC 3 cut(s) 746, 791, 983
BfaI CTAG 5 cut(s) 443, 767, 852, 926, 1025
BfmI CTRYAG 2 cut(s) 240, 1131
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 5 cut(s) 291, 771, 818, 1134, 1149
BlsI GCNGC 5 cut(s) 292, 772, 819, 1135, 1150
BmcAI AGTACT 1 cut(s) 1240
Bme1390I CCNGG 3 cut(s) 504, 662, 1294
Bme18I GGWCC 2 cut(s) 1019, 1347
BmgBI CACGTC 1 cut(s) 1067
BmgT120I GGNCC 3 cut(s) 500, 1019, 1347
BmiI GGNNCC 5 cut(s) 17, 571, 692, 1348, 1349
BmrFI CCNGG 3 cut(s) 504, 662, 1294
BmsI GCATC 2 cut(s) 302, 1020
BmtI GCTAGC 2 cut(s) 855, 929
BpmI CTGGAG 3 cut(s) 525, 889, 1315
BpuEI CTTGAG 1 cut(s) 114
Bsa29I ATCGAT 2 cut(s) 56, 60
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 5 cut(s) 19, 309, 502, 661, 1292
BsaXI ACNNNNNCTCC 2 cut(s) 931, 961
Bse1I ACTGG 2 cut(s) 78, 658
Bse3DI GCAATG 2 cut(s) 1254, 1278
BseBI CCWGG 3 cut(s) 504, 662, 1294
BseCI ATCGAT 2 cut(s) 56, 60
BseDI CCNNGG 5 cut(s) 19, 309, 502, 661, 1292
BseGI GGATG 2 cut(s) 590, 800
BseMI GCAATG 2 cut(s) 1254, 1278
BseMII CTCAG 3 cut(s) 55, 701, 1251
BseNI ACTGG 2 cut(s) 78, 658
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 4 cut(s) 277, 757, 829, 1145
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 2 cut(s) 501, 723
BshVI ATCGAT 2 cut(s) 56, 60
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 2 cut(s) 121, 193
BslFI GGGAC 2 cut(s) 37, 1360
BsmAI GTCTC 3 cut(s) 746, 791, 983
BsmFI GGGAC 2 cut(s) 37, 1360
BsnI GGCC 2 cut(s) 501, 723
Bso31I GGTCTC 1 cut(s) 746
Bsp1286I GDGCHC 2 cut(s) 121, 193
Bsp143I GATC 4 cut(s) 57, 184, 283, 1035
BspACI CCGC 1 cut(s) 1148
BspANI GGCC 2 cut(s) 501, 723
BspCNI CTCAG 3 cut(s) 54, 702, 1252
BspDI ATCGAT 2 cut(s) 56, 60
BspLI GGNNCC 5 cut(s) 17, 571, 692, 1348, 1349
BspMAI CTGCAG 2 cut(s) 244, 1135
BspMI ACCTGC 1 cut(s) 503
BspOI GCTAGC 2 cut(s) 855, 929
BspPI GGATC 3 cut(s) 192, 278, 1043
BspQI GCTCTTC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 746
BsrDI GCAATG 2 cut(s) 1254, 1278
BsrI ACTGG 2 cut(s) 78, 658
BssECI CCNNGG 5 cut(s) 19, 309, 502, 661, 1292
BssMI GATC 4 cut(s) 57, 184, 283, 1035
Bst2UI CCWGG 3 cut(s) 504, 662, 1294
Bst4CI ACNGT 8 cut(s) 20, 212, 313, 535, 762, 901, 1162, 1243
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 299
BstC8I GCNNGC 3 cut(s) 853, 927, 1009
BstDEI CTNAG 6 cut(s) 41, 710, 1048, 1235, 1260, 1315
BstDSI CCRYGG 2 cut(s) 19, 309
BstEII GGTNACC 1 cut(s) 656
BstF5I GGATG 2 cut(s) 590, 800
BstKTI GATC 4 cut(s) 60, 187, 286, 1038
BstMAI GTCTC 3 cut(s) 746, 791, 983
BstMBI GATC 4 cut(s) 57, 184, 283, 1035
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 5 cut(s) 299, 395, 814, 852, 1154
BstNI CCWGG 3 cut(s) 504, 662, 1294
BstPI GGTNACC 1 cut(s) 656
BstSCI CCNGG 3 cut(s) 502, 660, 1292
BstSFI CTRYAG 2 cut(s) 240, 1131
BstV1I GCAGC 4 cut(s) 277, 757, 829, 1145
Bsu15I ATCGAT 2 cut(s) 56, 60
BsuRI GGCC 2 cut(s) 501, 723
BsuTUI ATCGAT 2 cut(s) 56, 60
BtgI CCRYGG 2 cut(s) 19, 309
BtrI CACGTC 1 cut(s) 1067
BtsCI GGATG 2 cut(s) 590, 800
BtsI GCAGTG 2 cut(s) 853, 991
BtsIMutI CAGTG 3 cut(s) 217, 853, 991
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 3 cut(s) 853, 927, 1009
CaiI CAGNNNCTG 1 cut(s) 842
Cfr13I GGNCC 3 cut(s) 500, 1019, 1347
ClaI ATCGAT 2 cut(s) 56, 60
CseI GACGC 1 cut(s) 878
Csp6I GTAC 5 cut(s) 208, 393, 1110, 1239, 1364
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 3 cut(s) 299, 429, 1144
CviQI GTAC 5 cut(s) 208, 393, 1110, 1239, 1364
DdeI CTNAG 6 cut(s) 41, 710, 1048, 1235, 1260, 1315
DpnI GATC 4 cut(s) 59, 186, 285, 1037
DpnII GATC 4 cut(s) 57, 184, 283, 1035
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 191
Eco24I GRGCYC 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 479
Eco47I GGWCC 2 cut(s) 1019, 1347
Eco53kI GAGCTC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 1347
EcoO65I GGTNACC 1 cut(s) 656
EcoRII CCWGG 3 cut(s) 502, 660, 1292
EcoRV GATATC 1 cut(s) 479
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 3 cut(s) 302, 432, 1147
FalI AAGNNNNNCTT 2 cut(s) 878, 910
FaqI GGGAC 2 cut(s) 37, 1360
FatI CATG 3 cut(s) 298, 428, 1143
Fnu4HI GCNGC 5 cut(s) 291, 771, 818, 1134, 1149
FokI GGATG 2 cut(s) 597, 787
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 5 cut(s) 291, 771, 818, 1134, 1149
FspBI CTAG 5 cut(s) 443, 767, 852, 926, 1025
GluI GCNGC 5 cut(s) 291, 771, 818, 1134, 1149
GsuI CTGGAG 3 cut(s) 525, 889, 1315
HaeIII GGCC 2 cut(s) 501, 723
HgaI GACGC 1 cut(s) 878
Hin1II CATG 3 cut(s) 302, 432, 1147
HincII GTYRAC 1 cut(s) 877
HindII GTYRAC 1 cut(s) 877
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 5 cut(s) 32, 270, 436, 1056, 1099
HphI GGTGA 2 cut(s) 1312, 1321
Hpy166II GTNNAC 1 cut(s) 877
Hpy188I TCNGA 5 cut(s) 37, 44, 166, 628, 859
Hpy188III TCNNGA 3 cut(s) 281, 577, 1033
Hpy8I GTNNAC 1 cut(s) 877
HpyAV CCTTC 4 cut(s) 560, 564, 583, 713
HpyCH4III ACNGT 8 cut(s) 20, 212, 313, 535, 762, 901, 1162, 1243
HpyCH4IV ACGT 1 cut(s) 1066
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 395, 814, 852, 1154
HpyF3I CTNAG 6 cut(s) 41, 710, 1048, 1235, 1260, 1315
HpySE526I ACGT 1 cut(s) 1066
Hsp92II CATG 3 cut(s) 302, 432, 1147
KflI GGGWCCC 1 cut(s) 1347
Kzo9I GATC 4 cut(s) 57, 184, 283, 1035
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 4 cut(s) 277, 757, 829, 1145
LweI GCATC 2 cut(s) 302, 1020
MaeI CTAG 5 cut(s) 443, 767, 852, 926, 1025
MaeII ACGT 1 cut(s) 1066
MaeIII GTNAC 6 cut(s) 517, 524, 656, 670, 890, 1318
MalI GATC 4 cut(s) 59, 186, 285, 1037
MboI GATC 4 cut(s) 57, 184, 283, 1035
MboII GAAGA 3 cut(s) 75, 185, 1177
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 121, 193
MluCI AATT 8 cut(s) 254, 410, 491, 629, 639, 1116, 1177, 1214
MlyI GAGTC 3 cut(s) 26, 430, 1050
MmeI TCCRAC 3 cut(s) 396, 668, 997
MnlI CCTC 8 cut(s) 5, 160, 238, 367, 864, 954, 1032, 1342
MseI TTAA 5 cut(s) 89, 104, 470, 972, 1266
MslI CAYNNNNRTG 1 cut(s) 997
MspR9I CCNGG 3 cut(s) 504, 662, 1294
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 3 cut(s) 504, 662, 1294
MwoI GCNNNNNNNGC 5 cut(s) 299, 395, 814, 852, 1154
NdeII GATC 4 cut(s) 57, 184, 283, 1035
NheI GCTAGC 2 cut(s) 851, 925
NlaIII CATG 3 cut(s) 302, 432, 1147
NlaIV GGNNCC 5 cut(s) 17, 571, 692, 1348, 1349
NmuCI GTSAC 4 cut(s) 517, 524, 890, 1318
PaqCI CACCTGC 1 cut(s) 503
PciSI GCTCTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 270, 1099
PkrI GCNGC 5 cut(s) 292, 772, 819, 1135, 1150
Ple19I CGATCG 1 cut(s) 60
PleI GAGTC 3 cut(s) 26, 430, 1050
PpsI GAGTC 3 cut(s) 26, 430, 1050
PpuMI RGGWCCY 1 cut(s) 1347
Psp124BI GAGCTC 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 1347
Psp6I CCWGG 3 cut(s) 502, 660, 1292
PspEI GGTNACC 1 cut(s) 656
PspGI CCWGG 3 cut(s) 502, 660, 1292
PspN4I GGNNCC 5 cut(s) 17, 571, 692, 1348, 1349
PspPI GGNCC 3 cut(s) 500, 1019, 1347
PspPPI RGGWCCY 1 cut(s) 1347
PstI CTGCAG 2 cut(s) 244, 1135
PstNI CAGNNNCTG 1 cut(s) 842
PvuI CGATCG 1 cut(s) 60
RsaI GTAC 5 cut(s) 209, 394, 1111, 1240, 1365
RsaNI GTAC 5 cut(s) 208, 393, 1110, 1239, 1364
RseI CAYNNNNRTG 1 cut(s) 997
SacI GAGCTC 1 cut(s) 193
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 5 cut(s) 89, 104, 470, 972, 1266
SatI GCNGC 5 cut(s) 291, 771, 818, 1134, 1149
Sau3AI GATC 4 cut(s) 57, 184, 283, 1035
Sau96I GGNCC 3 cut(s) 500, 1019, 1347
ScaI AGTACT 1 cut(s) 1240
SchI GAGTC 3 cut(s) 26, 430, 1050
ScrFI CCNGG 3 cut(s) 504, 662, 1294
SduI GDGCHC 2 cut(s) 121, 193
SfaNI GCATC 2 cut(s) 302, 1020
SfcI CTRYAG 2 cut(s) 240, 1131
SinI GGWCC 2 cut(s) 1019, 1347
SmiMI CAYNNNNRTG 1 cut(s) 997
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 8 cut(s) 254, 410, 491, 629, 639, 1116, 1177, 1214
SsiI CCGC 1 cut(s) 1148
SspI AATATT 1 cut(s) 954
SspMI CTAG 5 cut(s) 443, 767, 852, 926, 1025
SstI GAGCTC 1 cut(s) 193
StyD4I CCNGG 3 cut(s) 502, 660, 1292
TaaI ACNGT 8 cut(s) 20, 212, 313, 535, 762, 901, 1162, 1243
TaiI ACGT 1 cut(s) 1069
TaqI TCGA 4 cut(s) 56, 60, 187, 1054
TasI AATT 8 cut(s) 254, 410, 491, 629, 639, 1116, 1177, 1214
TatI WGTACW 2 cut(s) 392, 1238
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 2 cut(s) 270, 1099
Tru1I TTAA 5 cut(s) 89, 104, 470, 972, 1266
Tru9I TTAA 5 cut(s) 89, 104, 470, 972, 1266
TscAI CASTG 3 cut(s) 217, 853, 991
TseFI GTSAC 4 cut(s) 517, 524, 890, 1318
TseI GCWGC 4 cut(s) 290, 770, 817, 1133
Tsp45I GTSAC 4 cut(s) 517, 524, 890, 1318
TspDTI ATGAA 7 cut(s) 75, 99, 114, 156, 266, 417, 1243
TspRI CASTG 3 cut(s) 217, 853, 991
VpaK11BI GGWCC 2 cut(s) 1019, 1347
XapI RAATTY 2 cut(s) 629, 1177
XspI CTAG 5 cut(s) 443, 767, 852, 926, 1025
ZrmI AGTACT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.