Rroxscaffold_7G00193550

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001325
Physical Location & Seq
Forward (+)
35074899 .. 35078693
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193550.1

Sequence Viewer

Length: 1335 bp
ATGGATGTGACAAGAAGTGCCAGTTCTTCATTAAGGTGGCGCTCTTTAAGTTCATTAGGTGCTCATCCCTCTCAAATAGATGAAGACATTGAAAGTGATAGTGTGTCAGAGGTGGGAGATATTGGGGATCGAGCTCTTCACAGCAACAGGTACAGTATAAGTGGCAGTTTCAACTTCTCGTCTTCAGAGGATATTCAATTGCAATCCTATGGATTCTGGTGTCATGATCCTGCTGCATCCCATGCAATCTCCACTGTGTCGCCTTTGCCAGAGGAAATCATTTCTCCCCTGTCTATTGATGCCATAGTACGTGATGAGGAGAAAAACCAAGCAAGTACAGAAAGAATACCAAAATTGTTGGAGTATGGTTCATGTATGACTCATCTAGCCTTCTTTGGCATTCTTGGGGTCTTAACGAGATATCTACTGCAAAAATTGTTCGGCCCCGGAGTTGCTGGTGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGCTCTTTCTTGATGGGGTGGTGCGGTGTTGTTTTTAAAGCAGATATATCGTATAGGTCAGATTTTTTGGCAATTGGATTGACAACAGGTTACCTGGGAAGTGTTACAACTTTTAGTGGTTGGAACCAGAAAATGCTTGAGCTGAGTGTCGAAGGCCATTGGGTTTTTGCTGGTCTTGGTTTTTTAATAGGTTTGTTTCTTGCTGCCTACTCCATCATTTTTGGGGTAGAAACATCCAAGTGTTTTAGGCAGCTGCTTGTAAGGATTTCAGGGTATGGTGTTGCTAGCTCTAGAAAGAGCTGGAGAGTTGACAGCCTCAAGCGTCACTTGGCAGTTTTGGCAGTGTTTCTGCTGTTGCTAGCTGGATTATGGAGTATGAGTGGAATATTGATGAGGCAGGAATTTAACAGCAACAGCAGTGAGACACAACTTTGGTTGGCTTGCATCGTTGGACCTCCAGGAGTCTGGGTCAGGTGGTTCTTAGCTCGACTAAATGGACGTGGATTGGGAAAGACAGGGTTGTTAAAATGGGTTCCGTTTGGTACTCTAATTGCCAATGTTTCTGCAGCTTGTATCATGGCGGCACTTGCTACTGTACAGAGAGAGGTAAATACCAAGACTTGCGATATTGTTGCAACAGGCATACAATTTGGATTTTTGGGTTGCCTGAGTACTGTATCTACGTTCATTGCCGAGTTTAATGCAATGAGAGAAAGTAAATACCCCTGGAGAGCATACATCTACGCCACAGTCACCATATGCACCTCATTTTGTTTAGGGACCCTGATATATTCTGTACCTGTTTGGGCAAAGGGAGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

444

Amino Acids

48.62

Weight (kDa)

6.66

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 129 - 246 8.1e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 316 - 429 6e-17 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 534, 1091
AclWI GGATC 2 cut(s) 135, 221
AcsI RAATTY 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 7 cut(s) 152, 309, 337, 1054, 1107, 1183, 1308
AgsI TTSAA 3 cut(s) 92, 172, 197
AjiI CACGTC 1 cut(s) 1010
AjnI CCWGG 3 cut(s) 603, 967, 1235
AluBI AGCT 8 cut(s) 134, 652, 763, 798, 810, 872, 995, 1079
AluI AGCT 8 cut(s) 134, 652, 763, 798, 810, 872, 995, 1079
Alw21I GWGCWC 2 cut(s) 64, 136
Alw26I GTCTC 2 cut(s) 926, 1320
AlwI GGATC 2 cut(s) 135, 221
AoxI GGCC 2 cut(s) 442, 664
ApeKI GCWGC 5 cut(s) 233, 713, 760, 763, 1076
ApoI RAATTY 1 cut(s) 911
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 3 cut(s) 443, 962, 1290
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 1255
AsuNHI GCTAGC 2 cut(s) 794, 868
AvaII GGWCC 2 cut(s) 962, 1290
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 2 cut(s) 90, 174
Bbv12I GWGCWC 2 cut(s) 64, 136
BbvI GCAGC 5 cut(s) 220, 700, 750, 772, 1088
BccI CCATC 2 cut(s) 517, 731
BcgI CGANNNNNNTGC 6 cut(s) 540, 574, 1124, 1158, 1193, 1227
BciT130I CCWGG 3 cut(s) 605, 969, 1237
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 926, 1320
BfaI CTAG 4 cut(s) 386, 795, 801, 869
BfmI CTRYAG 1 cut(s) 1074
BfoI RGCGCY 1 cut(s) 43
BisI GCNGC 6 cut(s) 234, 714, 761, 764, 1077, 1092
BlsI GCNGC 6 cut(s) 235, 715, 762, 765, 1078, 1093
BmcAI AGTACT 1 cut(s) 1183
Bme1390I CCNGG 4 cut(s) 447, 605, 969, 1237
Bme18I GGWCC 2 cut(s) 962, 1290
BmgBI CACGTC 1 cut(s) 1010
BmgT120I GGNCC 3 cut(s) 443, 962, 1290
BmiI GGNNCC 5 cut(s) 445, 635, 1044, 1291, 1292
BmrFI CCNGG 4 cut(s) 447, 605, 969, 1237
BmsI GCATC 3 cut(s) 245, 289, 963
BmtI GCTAGC 2 cut(s) 798, 872
BpiI GAAGAC 2 cut(s) 90, 174
BpmI CTGGAG 3 cut(s) 832, 951, 1258
BpuEI CTTGAG 2 cut(s) 668, 812
BpuMI CCSGG 1 cut(s) 447
BsaAI YACGTR 1 cut(s) 311
BsaJI CCNNGG 3 cut(s) 445, 604, 1235
BsaXI ACNNNNNCTCC 4 cut(s) 874, 904, 963, 993
Bse1I ACTGG 1 cut(s) 21
Bse3DI GCAATG 2 cut(s) 1197, 1221
BseBI CCWGG 3 cut(s) 605, 969, 1237
BseDI CCNNGG 3 cut(s) 445, 604, 1235
BseGI GGATG 4 cut(s) 10, 64, 236, 743
BseMI GCAATG 2 cut(s) 1197, 1221
BseMII CTCAG 2 cut(s) 644, 1169
BseNI ACTGG 1 cut(s) 21
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 5 cut(s) 220, 700, 750, 772, 1088
BshFI GGCC 2 cut(s) 444, 666
BsiHKAI GWGCWC 2 cut(s) 64, 136
BsiSI CCGG 1 cut(s) 447
BslFI GGGAC 1 cut(s) 1303
BsmAI GTCTC 2 cut(s) 926, 1320
BsmFI GGGAC 1 cut(s) 1303
BsmI GAATGC 1 cut(s) 399
BsnI GGCC 2 cut(s) 444, 666
Bsp1286I GDGCHC 2 cut(s) 64, 136
Bsp1407I TGTACA 1 cut(s) 1105
Bsp143I GATC 3 cut(s) 127, 226, 490
BspACI CCGC 2 cut(s) 534, 1091
BspANI GGCC 2 cut(s) 444, 666
BspCNI CTCAG 2 cut(s) 645, 1170
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 5 cut(s) 445, 635, 1044, 1291, 1292
BspMAI CTGCAG 1 cut(s) 1078
BspOI GCTAGC 2 cut(s) 798, 872
BspPI GGATC 2 cut(s) 135, 221
BspQI GCTCTTC 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 1197, 1221
BsrGI TGTACA 1 cut(s) 1105
BsrI ACTGG 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 445, 604, 1235
BssMI GATC 3 cut(s) 127, 226, 490
Bst2UI CCWGG 3 cut(s) 605, 969, 1237
Bst4CI ACNGT 5 cut(s) 155, 256, 1105, 1186, 1261
Bst6I CTCTTC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 1105
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 3 cut(s) 796, 870, 952
BstDEI CTNAG 3 cut(s) 653, 991, 1178
BstEII GGTNACC 1 cut(s) 599
BstF5I GGATG 4 cut(s) 10, 64, 236, 743
BstH2I RGCGCY 1 cut(s) 43
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 130, 229, 493
BstMAI GTCTC 2 cut(s) 926, 1320
BstMBI GATC 3 cut(s) 127, 226, 490
BstMWI GCNNNNNNNGC 3 cut(s) 242, 848, 1097
BstNI CCWGG 3 cut(s) 605, 969, 1237
BstPI GGTNACC 1 cut(s) 599
BstSCI CCNGG 4 cut(s) 445, 603, 967, 1235
BstSFI CTRYAG 1 cut(s) 1074
BstV1I GCAGC 5 cut(s) 220, 700, 750, 772, 1088
BstV2I GAAGAC 2 cut(s) 90, 174
BstXI CCANNNNNNTGG 1 cut(s) 975
BsuRI GGCC 2 cut(s) 444, 666
BtrI CACGTC 1 cut(s) 1010
BtsCI GGATG 4 cut(s) 10, 64, 236, 743
BtsI GCAGTG 2 cut(s) 858, 934
BtsIMutI CAGTG 3 cut(s) 252, 858, 934
Cac8I GCNNGC 3 cut(s) 796, 870, 952
CciI TCATGA 1 cut(s) 223
CfoI GCGC 1 cut(s) 42
Cfr13I GGNCC 3 cut(s) 443, 962, 1290
CseI GACGC 1 cut(s) 821
Csp6I GTAC 7 cut(s) 151, 308, 336, 1053, 1106, 1182, 1307
CviAII CATG 4 cut(s) 224, 242, 372, 1087
CviQI GTAC 7 cut(s) 151, 308, 336, 1053, 1106, 1182, 1307
DdeI CTNAG 3 cut(s) 653, 991, 1178
DpnI GATC 3 cut(s) 129, 228, 492
DpnII GATC 3 cut(s) 127, 226, 490
DraI TTTAAA 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Ecl136II GAGCTC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 422
Eco47I GGWCC 2 cut(s) 962, 1290
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 1290
EcoO65I GGTNACC 1 cut(s) 599
EcoRII CCWGG 3 cut(s) 603, 967, 1235
EcoRV GATATC 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 4 cut(s) 227, 245, 375, 1090
FalI AAGNNNNNCTT 2 cut(s) 821, 853
FaqI GGGAC 1 cut(s) 1303
FatI CATG 4 cut(s) 223, 241, 371, 1086
FauNDI CATATG 1 cut(s) 1268
Fnu4HI GCNGC 6 cut(s) 234, 714, 761, 764, 1077, 1092
FokI GGATG 4 cut(s) 17, 51, 223, 730
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 6 cut(s) 234, 714, 761, 764, 1077, 1092
FspBI CTAG 4 cut(s) 386, 795, 801, 869
GlaI GCGC 1 cut(s) 41
GluI GCNGC 6 cut(s) 234, 714, 761, 764, 1077, 1092
GsuI CTGGAG 3 cut(s) 832, 951, 1258
HaeII RGCGCY 1 cut(s) 43
HaeIII GGCC 2 cut(s) 444, 666
HapII CCGG 1 cut(s) 447
HgaI GACGC 1 cut(s) 821
HhaI GCGC 1 cut(s) 42
Hin1II CATG 4 cut(s) 227, 245, 375, 1090
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HinfI GANTC 3 cut(s) 213, 379, 972
HpaII CCGG 1 cut(s) 447
HphI GGTGA 1 cut(s) 1255
Hpy166II GTNNAC 1 cut(s) 820
Hpy188I TCNGA 3 cut(s) 109, 187, 571
Hpy188III TCNNGA 3 cut(s) 224, 520, 801
Hpy8I GTNNAC 1 cut(s) 820
HpyAV CCTTC 3 cut(s) 400, 507, 656
HpyCH4III ACNGT 5 cut(s) 155, 256, 1105, 1186, 1261
HpyCH4IV ACGT 3 cut(s) 310, 1009, 1193
HpyCH4V TGCA 9 cut(s) 202, 236, 245, 430, 954, 1076, 1145, 1214, 1272
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 848, 1097
HpyF3I CTNAG 3 cut(s) 653, 991, 1178
HpySE526I ACGT 3 cut(s) 310, 1009, 1193
Hsp92II CATG 4 cut(s) 227, 245, 375, 1090
HspAI GCGC 1 cut(s) 40
KflI GGGWCCC 1 cut(s) 1290
Kzo9I GATC 3 cut(s) 127, 226, 490
LguI GCTCTTC 1 cut(s) 141
Lsp1109I GCAGC 5 cut(s) 220, 700, 750, 772, 1088
LweI GCATC 3 cut(s) 245, 289, 963
MaeI CTAG 4 cut(s) 386, 795, 801, 869
MaeII ACGT 3 cut(s) 310, 1009, 1193
MaeIII GTNAC 7 cut(s) 7, 460, 467, 599, 613, 833, 1261
MalI GATC 3 cut(s) 129, 228, 492
MboI GATC 3 cut(s) 127, 226, 490
MboII GAAGA 5 cut(s) 18, 95, 128, 174, 485
MfeI CAATTG 2 cut(s) 197, 582
MhlI GDGCHC 2 cut(s) 64, 136
MluCI AATT 8 cut(s) 197, 353, 434, 477, 582, 911, 1059, 1157
MlyI GAGTC 2 cut(s) 373, 981
MmeI TCCRAC 3 cut(s) 339, 611, 940
MseI TTAA 8 cut(s) 32, 47, 413, 546, 695, 915, 1034, 1209
MslI CAYNNNNRTG 2 cut(s) 34, 748
MspA1I CMGCKG 1 cut(s) 763
MspI CCGG 1 cut(s) 447
MspR9I CCNGG 4 cut(s) 447, 605, 969, 1237
MunI CAATTG 2 cut(s) 197, 582
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 3 cut(s) 605, 969, 1237
MwoI GCNNNNNNNGC 3 cut(s) 242, 848, 1097
NciI CCSGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 1268
NdeII GATC 3 cut(s) 127, 226, 490
NheI GCTAGC 2 cut(s) 794, 868
NlaIII CATG 4 cut(s) 227, 245, 375, 1090
NlaIV GGNNCC 5 cut(s) 445, 635, 1044, 1291, 1292
NmeAIII GCCGAG 1 cut(s) 1228
NmuCI GTSAC 5 cut(s) 7, 460, 467, 833, 1261
PagI TCATGA 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 967
PkrI GCNGC 6 cut(s) 235, 715, 762, 765, 1078, 1093
PleI GAGTC 2 cut(s) 373, 980
PpsI GAGTC 2 cut(s) 373, 980
Ppu21I YACGTR 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 1290
Psp124BI GAGCTC 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 1290
Psp6I CCWGG 3 cut(s) 603, 967, 1235
PspEI GGTNACC 1 cut(s) 599
PspGI CCWGG 3 cut(s) 603, 967, 1235
PspN4I GGNNCC 5 cut(s) 445, 635, 1044, 1291, 1292
PspPI GGNCC 3 cut(s) 443, 962, 1290
PspPPI RGGWCCY 1 cut(s) 1290
PstI CTGCAG 1 cut(s) 1078
PvuII CAGCTG 1 cut(s) 763
RsaI GTAC 7 cut(s) 152, 309, 337, 1054, 1107, 1183, 1308
RsaNI GTAC 7 cut(s) 151, 308, 336, 1053, 1106, 1182, 1307
RseI CAYNNNNRTG 2 cut(s) 34, 748
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 8 cut(s) 32, 47, 413, 546, 695, 915, 1034, 1209
SatI GCNGC 6 cut(s) 234, 714, 761, 764, 1077, 1092
Sau3AI GATC 3 cut(s) 127, 226, 490
Sau96I GGNCC 3 cut(s) 443, 962, 1290
ScaI AGTACT 1 cut(s) 1183
SchI GAGTC 2 cut(s) 373, 981
ScrFI CCNGG 4 cut(s) 447, 605, 969, 1237
SduI GDGCHC 2 cut(s) 64, 136
SfaNI GCATC 3 cut(s) 245, 289, 963
SfcI CTRYAG 1 cut(s) 1074
SinI GGWCC 2 cut(s) 962, 1290
SmiMI CAYNNNNRTG 2 cut(s) 34, 748
SmlI CTYRAG 2 cut(s) 647, 827
SmoI CTYRAG 2 cut(s) 647, 827
Sse9I AATT 8 cut(s) 197, 353, 434, 477, 582, 911, 1059, 1157
SsiI CCGC 2 cut(s) 534, 1091
SspI AATATT 1 cut(s) 897
SspMI CTAG 4 cut(s) 386, 795, 801, 869
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 4 cut(s) 445, 603, 967, 1235
TaaI ACNGT 5 cut(s) 155, 256, 1105, 1186, 1261
TaiI ACGT 3 cut(s) 313, 1012, 1196
TaqI TCGA 3 cut(s) 130, 660, 997
TasI AATT 8 cut(s) 197, 353, 434, 477, 582, 911, 1059, 1157
TatI WGTACW 3 cut(s) 335, 1105, 1181
TauI GCSGC 1 cut(s) 1094
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 8 cut(s) 32, 47, 413, 546, 695, 915, 1034, 1209
Tru9I TTAA 8 cut(s) 32, 47, 413, 546, 695, 915, 1034, 1209
TscAI CASTG 3 cut(s) 259, 858, 934
TseFI GTSAC 5 cut(s) 7, 460, 467, 833, 1261
TseI GCWGC 5 cut(s) 233, 713, 760, 763, 1076
Tsp45I GTSAC 5 cut(s) 7, 460, 467, 833, 1261
TspDTI ATGAA 5 cut(s) 18, 42, 96, 360, 1186
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 3 cut(s) 259, 858, 934
VpaK11BI GGWCC 2 cut(s) 962, 1290
XapI RAATTY 1 cut(s) 911
XbaI TCTAGA 1 cut(s) 800
XspI CTAG 4 cut(s) 386, 795, 801, 869
ZrmI AGTACT 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.