MD15G1354300.v1.1

UPF0695 membrane protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
42545407 .. 42547238
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1354300.v1.1.491

Sequence Viewer

Length: 393 bp
ATGACTAATTTAGCAGTTTTTGGCATTCTTGGGGTCTTGACGAAATATCTTCTGCAAAAATTGTTTGGCCTGGGAGTTGTTGGTGTAACAAGCGACAAAACCATTCTCTACCTTGATCTTCCTTCTAATATGGTTGGCTCTTTCTTGATGGGGTGGTTTGGTGTTGTTTTCAAAGGAGATATATCCTATGCGTCCAATTATTTGGTCATCGGATTATCAACTGGTTACTTAGGAAGCCTTACAACCTTCAGTGGTTGGAACCAGCTCAGTGTTGAAGGACATTGGGTTTTTGCTCTGCTCGGCTTTTTGATAGGTTTGTTTCTTGCGGCCTACTCCCTCATTTTTGGGGTAGAGACAGCAAAGGGTTTTAGGCAGATTCTTGAGAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

14.16

Weight (kDa)

7.98

Isoelectric Point (pI)

17.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 4 - 117 2.5e-10 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 232
AgsI TTSAA 2 cut(s) 172, 275
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 347
AoxI GGCC 2 cut(s) 67, 327
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 347
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 2 cut(s) 69, 329
BsmAI GTCTC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 69, 329
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 326
BspANI GGCC 2 cut(s) 69, 329
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 229, 266
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 69, 329
BtsIMutI CAGTG 2 cut(s) 256, 274
CseI GACGC 1 cut(s) 180
CviJI RGCY 6 cut(s) 69, 138, 237, 265, 303, 329
CviKI_1 RGCY 6 cut(s) 69, 138, 237, 265, 303, 329
DdeI CTNAG 2 cut(s) 229, 266
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 69
FaiI YATR 3 cut(s) 131, 182, 189
Fnu4HI GCNGC 1 cut(s) 327
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 2 cut(s) 69, 329
HgaI GACGC 1 cut(s) 180
HinfI GANTC 1 cut(s) 376
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 37, 145, 380
HpyAV CCTTC 3 cut(s) 132, 256, 269
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 229, 266
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 56, 83, 207, 275
MaeIII GTNAC 2 cut(s) 85, 224
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 2 cut(s) 41, 110
MluCI AATT 3 cut(s) 7, 59, 196
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 2 cut(s) 347, 378
MspR9I CCNGG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 1 cut(s) 71
NdeII GATC 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 279
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 260
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 71
SetI ASST 4 cut(s) 114, 248, 267, 316
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 3 cut(s) 7, 59, 196
SsiI CCGC 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 69
TasI AATT 3 cut(s) 7, 59, 196
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 376
TscAI CASTG 2 cut(s) 256, 274
TspRI CASTG 2 cut(s) 256, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.