Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001325

Physical Location & Seq

Genomic Coordinates Reverse (-)

20118374 .. 20120126

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1168900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAAATTGGTTTCAATACTGATTATTGGATCGAAACAATTATTGGGTGTGCTGGATTTAGCAAATTAGATGATGGCAATGAAAGTGAATGTGTGTCAGAGGCAGGAGATATTCAGGATCGGCCTCTTCACAGAAACAGGCCCAGTGAGAGTGGCAGCATCCACTTGTTTCCTTCAGAGGGCATTCAGCTCCAATCCTATGGGTTCTGGGGTCGTGACCCTGTTGCATCCAAAGCAATTTCCCCTGTTTCTCCCTTGCTAGAGGAAGTCATATCTCCTCTTTTCAGTGATGCGATCATACATGAGGACAAAAAGAAAGACAATACGATAAGGTTGCCAAAATTCTTGGAGTACGGTTCATGCATGGTTCATTTAGTTGTGTTTGGCAGTCTCCAGGGTAACACACTTAACTTTGTTTTTCAATGTATACCAAAGTGCATTTATTTGAATCACAACATATACGGAGTTTGTAGCTGTTATTGCCTTCGTTTGACAAGATTTGGATCTTCAGATGCTTGTTGGTTCTTTCTTGATGGGGTCGTTGGGTGTTGTTTTCGAAGGAGATATATCCTATACGTCCGATTATTTGCCATTGGATTGTCAACCGGTTACTTAGGAAGCCTTACAACTTTCAGCGGTTGGAAGCAGAAAATGCTTGAACTCAGTGCTGAAGGCCATTGGGTGTTTGCTCTGCTCGGTTTTCTAATAGAGACAGCAAAGGGTTTTAGGCAGCTTCTTGATGGGAACTCAGTATGTGGTGTCACTAGCTCTAGAAGGAGTTGGAGGGTTGACAGCCACAAGCATCACTTGGTATCTTTAGCTGTGTTGCTGTGGATGCTAGGTTCTCTATGGAGTGTGAGTGGAATAATGTTGAGAGAGGAATTTAAAAGTGACAGCGGCGAGGTGCAATTGTGGTTAGGTTGCATAGTTGGACCTCTTGATGTGTGGATCAGGTGGTTTAGCCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRCB

Protein Analysis

324

Amino Acids

36.35

Weight (kDa)

6.31

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41705 AT2G41705 AT2G41705 AT2G41705
fragaria_vesca	FvH4_2g13600 FvH4_2g13600 FvH4_2g26430 FvH4_2g26430 FvH4_2g26430
malus_domestica	MD05G1028200.v1.1 MD05G1028300.v1.1 MD05G1028400.v1.1 MD08G1121700.v1.1 MD08G1168900.v1.1 MD08G1170900.v1.1 MD15G1354200.v1.1 MD15G1354300.v1.1 MD15G1354500.v1.1 MD16G1151600.v1.1
prunus_persica	Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1
pyrus_communis	pycom08g14420 pycom15g31750
rosa_chinensis	RchiOBHm_Chr6g0275211 RchiOBHm_Chr6g0295111
rosa_laevigata	RLG00000011820 RLG00000013487
rosa_multiflora	Rmu_sc0002096.1_g000021 Rmu_ssc0000041.1_g000022
rosa_roxburghii	Rroxscaffold_7G00172720 Rroxscaffold_7G00193550
rosa_rugosa	Rorug06G0090200.1 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200
rosa_samantha	Rh6AG203500 Rh6AG362200 Rh6BG206400 Rh6BG369900 Rh6CG208900 Rh6CG376500 Rh6DG199000 Rh6DG363000
rosa_wichuraiana	Rw6G017660 Rw6G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	2 cut(s)	636, 897
AclWI	GGATC	4 cut(s)	38, 126, 511, 956
AcsI	RAATTY	2 cut(s)	341, 881
AcuI	CTGAAG	3 cut(s)	159, 492, 690
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	4 cut(s)	16, 422, 448, 659
AjnI	CCWGG	2 cut(s)	393, 963
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
AluBI	AGCT	5 cut(s)	190, 474, 733, 768, 821
AluI	AGCT	5 cut(s)	190, 474, 733, 768, 821
Alw26I	GTCTC	2 cut(s)	395, 704
AlwI	GGATC	4 cut(s)	38, 126, 511, 956
AoxI	GGCC	3 cut(s)	122, 140, 673
ApeKI	GCWGC	2 cut(s)	156, 730
ApoI	RAATTY	2 cut(s)	341, 881
AsiGI	ACCGGT	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	141, 932
AsuII	TTCGAA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	932
BbvI	GCAGC	2 cut(s)	168, 742
BccI	CCATC	3 cut(s)	68, 527, 734
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BciT130I	CCWGG	2 cut(s)	395, 965
BcoDI	GTCTC	2 cut(s)	395, 704
BfaI	CTAG	4 cut(s)	260, 765, 771, 839
BisI	GCNGC	3 cut(s)	157, 731, 898
BlsI	GCNGC	3 cut(s)	158, 732, 899
Bme1390I	CCNGG	2 cut(s)	395, 965
Bme18I	GGWCC	1 cut(s)	932
BmgT120I	GGNCC	2 cut(s)	141, 932
BmrFI	CCNGG	2 cut(s)	395, 965
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	6 cut(s)	168, 236, 280, 502, 811, 825
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	377
Bpu14I	TTCGAA	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	502
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	605
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	395, 965
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	3 cut(s)	159, 227, 840
BseJI	GATNNNNATC	1 cut(s)	502
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	676, 762
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	168, 742
BshFI	GGCC	3 cut(s)	124, 142, 675
BshTI	ACCGGT	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	2 cut(s)	395, 704
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	124, 142, 675
Bsp119I	TTCGAA	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	30, 118, 294, 503, 948
BspACI	CCGC	2 cut(s)	636, 897
BspANI	GGCC	3 cut(s)	124, 142, 675
BspCNI	CTCAG	2 cut(s)	675, 761
BspPI	GGATC	4 cut(s)	38, 126, 511, 956
BspT104I	TTCGAA	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	5 cut(s)	30, 118, 294, 503, 948
BssNAI	GTATAC	1 cut(s)	428
Bst1107I	GTATAC	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	395, 965
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstBI	TTCGAA	1 cut(s)	556
BstDEI	CTNAG	3 cut(s)	613, 662, 748
BstF5I	GGATG	3 cut(s)	159, 227, 840
BstKTI	GATC	5 cut(s)	33, 121, 297, 506, 951
BstMAI	GTCTC	2 cut(s)	395, 704
BstMBI	GATC	5 cut(s)	30, 118, 294, 503, 948
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 480, 652, 835
BstNI	CCWGG	2 cut(s)	395, 965
BstSCI	CCNGG	2 cut(s)	393, 963
BstV1I	GCAGC	2 cut(s)	168, 742
BstX2I	RGATCY	1 cut(s)	503
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	503
BstZ17I	GTATAC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	124, 142, 675
BtsCI	GGATG	3 cut(s)	159, 227, 840
BtsIMutI	CAGTG	3 cut(s)	151, 292, 670
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	141, 932
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	1 cut(s)	605
CviAII	CATG	3 cut(s)	302, 360, 364
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	613, 662, 748
DpnI	GATC	5 cut(s)	32, 120, 296, 505, 950
DpnII	GATC	5 cut(s)	30, 118, 294, 503, 948
DraI	TTTAAA	1 cut(s)	886
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	932
Eco57I	CTGAAG	3 cut(s)	159, 492, 690
EcoRII	CCWGG	2 cut(s)	393, 963
EcoT22I	ATGCAT	1 cut(s)	365
FaeI	CATG	3 cut(s)	305, 363, 367
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FatI	CATG	3 cut(s)	301, 359, 363
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	157, 731, 898
FokI	GGATG	3 cut(s)	146, 214, 847
Fsp4HI	GCNGC	3 cut(s)	157, 731, 898
FspBI	CTAG	4 cut(s)	260, 765, 771, 839
GluI	GCNGC	3 cut(s)	157, 731, 898
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	124, 142, 675
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	3 cut(s)	305, 363, 367
HincII	GTYRAC	2 cut(s)	603, 790
HindII	GTYRAC	2 cut(s)	603, 790
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	1 cut(s)	606
Hpy166II	GTNNAC	3 cut(s)	428, 603, 790
Hpy188I	TCNGA	4 cut(s)	100, 178, 511, 581
Hpy188III	TCNNGA	6 cut(s)	116, 215, 530, 737, 771, 938
Hpy8I	GTNNAC	3 cut(s)	428, 603, 790
HpyAV	CCTTC	5 cut(s)	183, 494, 552, 665, 768
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	5 cut(s)	227, 363, 438, 907, 924
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 480, 652, 835
HpyF3I	CTNAG	3 cut(s)	613, 662, 748
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	3 cut(s)	305, 363, 367
Kzo9I	GATC	5 cut(s)	30, 118, 294, 503, 948
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	168, 742
LweI	GCATC	6 cut(s)	168, 236, 280, 502, 811, 825
MaeI	CTAG	4 cut(s)	260, 765, 771, 839
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	5 cut(s)	215, 398, 608, 760, 890
MalI	GATC	5 cut(s)	32, 120, 296, 505, 950
MboI	GATC	5 cut(s)	30, 118, 294, 503, 948
MboII	GAAGA	2 cut(s)	119, 498
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	1 cut(s)	503
MluCI	AATT	7 cut(s)	6, 39, 65, 237, 341, 881, 908
MmeI	TCCRAC	3 cut(s)	620, 761, 910
Mph1103I	ATGCAT	1 cut(s)	365
MseI	TTAA	3 cut(s)	408, 885, 970
MspA1I	CMGCKG	2 cut(s)	636, 897
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	395, 965
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	395, 965
MwoI	GCNNNNNNNGC	4 cut(s)	233, 480, 652, 835
NdeII	GATC	5 cut(s)	30, 118, 294, 503, 948
NlaIII	CATG	3 cut(s)	305, 363, 367
NmuCI	GTSAC	3 cut(s)	215, 760, 890
NsiI	ATGCAT	1 cut(s)	365
NspV	TTCGAA	1 cut(s)	556
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	448
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	158, 732, 899
Psp6I	CCWGG	2 cut(s)	393, 963
PspGI	CCWGG	2 cut(s)	393, 963
PspPI	GGNCC	2 cut(s)	141, 932
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	408, 885, 970
SatI	GCNGC	3 cut(s)	157, 731, 898
Sau3AI	GATC	5 cut(s)	30, 118, 294, 503, 948
Sau96I	GGNCC	2 cut(s)	141, 932
ScrFI	CCNGG	2 cut(s)	395, 965
SfaNI	GCATC	6 cut(s)	168, 236, 280, 502, 811, 825
SfuI	TTCGAA	1 cut(s)	556
SinI	GGWCC	1 cut(s)	932
Sse9I	AATT	7 cut(s)	6, 39, 65, 237, 341, 881, 908
SsiI	CCGC	2 cut(s)	636, 897
SspMI	CTAG	4 cut(s)	260, 765, 771, 839
StyD4I	CCNGG	2 cut(s)	393, 963
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	2 cut(s)	33, 556
TasI	AATT	7 cut(s)	6, 39, 65, 237, 341, 881, 908
TauI	GCSGC	1 cut(s)	900
TfiI	GAWTC	1 cut(s)	448
Tru1I	TTAA	3 cut(s)	408, 885, 970
Tru9I	TTAA	3 cut(s)	408, 885, 970
TscAI	CASTG	3 cut(s)	151, 292, 670
TseFI	GTSAC	3 cut(s)	215, 760, 890
TseI	GCWGC	2 cut(s)	156, 730
Tsp45I	GTSAC	3 cut(s)	215, 760, 890
TspDTI	ATGAA	3 cut(s)	96, 348, 359
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	3 cut(s)	151, 292, 670
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	2 cut(s)	341, 881
XbaI	TCTAGA	1 cut(s)	770
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	4 cut(s)	260, 765, 771, 839
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.