MD15G1354200.v1.1

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001325
Physical Location & Seq
Reverse (-)
42544588 .. 42545297
710 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1354200.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGTTGGGTTGCATAGTTGGACCTTTTGGTGTGTGGATCCGGTGGTTCCATTTGGTACTTTAATTGCCAATGTTTCTGCAACTTGTGTAATGGCGGCCCTATCTACTGTGAAAAAAGTCGCGAATACTAAGACTTGCGACATTGTTGCAACAGGCATACAATTTGGATTTCTAGGTTGCCTGAGTACTGTTTCTACCTTCATTGCTGAGTTCAACGAGATGAGAGAAAACAAATACCCTTGGAGAGCATACGCATATACCATGGCTACGATATGCACCTCGTTTGGTTTGGGAATCCTGATATATTGTGTACCCGTTTGGACAAGGGCATACAAGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

114

Amino Acids

12.54

Weight (kDa)

8.57

Isoelectric Point (pI)

21.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 12 - 98 1.9e-13 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 32, 45
AfaI GTAC 3 cut(s) 58, 187, 312
AgsI TTSAA 1 cut(s) 214
AlwI GGATC 2 cut(s) 32, 45
AoxI GGCC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 21, 97
AvaII GGWCC 1 cut(s) 21
BamHI GGATCC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 187
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 2 cut(s) 21, 97
BmiI GGNNCC 2 cut(s) 39, 48
BsaJI CCNNGG 2 cut(s) 239, 261
BsaWI WCCGGW 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 239, 261
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 173, 198
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 41
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 261
Bsp68I TCGCGA 1 cut(s) 122
BspACI CCGC 1 cut(s) 95
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 174, 199
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 39, 48
BspPI GGATC 2 cut(s) 32, 45
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 239, 261
BssMI GATC 1 cut(s) 37
BssT1I CCWWGG 2 cut(s) 239, 261
Bst4CI ACNGT 2 cut(s) 109, 190
BstDEI CTNAG 3 cut(s) 129, 182, 207
BstDSI CCRYGG 1 cut(s) 261
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstUI CGCG 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 21, 97
Csp6I GTAC 3 cut(s) 57, 186, 311
CviAII CATG 1 cut(s) 262
CviJI RGCY 2 cut(s) 98, 266
CviKI_1 RGCY 2 cut(s) 98, 266
CviQI GTAC 3 cut(s) 57, 186, 311
DdeI CTNAG 3 cut(s) 129, 182, 207
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 239, 261
Eco47I GGWCC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 239, 261
ErhI CCWWGG 2 cut(s) 239, 261
FaeI CATG 1 cut(s) 265
FaiI YATR 9 cut(s) 15, 158, 250, 256, 258, 263, 274, 304, 331
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 265
HinfI GANTC 1 cut(s) 294
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 2 cut(s) 121, 298
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 2 cut(s) 109, 190
HpyCH4V TGCA 4 cut(s) 13, 80, 149, 276
HpyF3I CTNAG 3 cut(s) 129, 182, 207
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 54, 138, 194, 311
MaeI CTAG 1 cut(s) 173
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MflI RGATCY 1 cut(s) 37
MluCI AATT 2 cut(s) 63, 161
MnlI CCTC 1 cut(s) 289
MseI TTAA 1 cut(s) 62
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 39, 48
NruI TCGCGA 1 cut(s) 122
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 39, 48
PspPI GGNCC 2 cut(s) 21, 97
PsuI RGATCY 1 cut(s) 37
RruI TCGCGA 1 cut(s) 122
RsaI GTAC 3 cut(s) 58, 187, 312
RsaNI GTAC 3 cut(s) 57, 186, 311
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 21, 97
ScaI AGTACT 1 cut(s) 187
SetI ASST 4 cut(s) 26, 178, 200, 281
SinI GGWCC 1 cut(s) 21
Sse9I AATT 2 cut(s) 63, 161
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 2 cut(s) 239, 261
TaaI ACNGT 2 cut(s) 109, 190
TasI AATT 2 cut(s) 63, 161
TatI WGTACW 1 cut(s) 185
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 21
XspI CTAG 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.