Rroxscaffold_7G00172720

UPF0695 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001325
Physical Location & Seq
Reverse (-)
12878828 .. 12884052
5225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172720.1

Sequence Viewer

Length: 1371 bp
ATGGAGGGAGCAGGGTACCGAGGTACTGACCCTGAACCCGGAAGTGGTGTACCCAGTAGTGCCAATTCTTCTTCAAAAATGTGTTCTTCAAGTATATCAGGTGCTCAGCCTTCTGGAATAGATGATGACCCTGATGACCGTGTGTCTGAGGTGGGAGATATTGGGGATCGAGCTCTGCACAGCAACAGGAACAGTTTCAGTGAGAGCCTTAGCAACTTGTCTGGAGAGGATGTTTTATTGCCATCCTATGGGTTTTGGTGTCGTGATCGTACTGCATCCCGTGCTATCCCCACTGTGCCTTTGCCAGAGGAAATCATATCTCTTTCCATTGATGTGGTATCACGCAATGAAGATAAAAAGCAAGAAAATACAAATAAGTTGCTGCCAAAGTGGATGGAGTATGGTTCATGTATGACACATTTAGCTGTTTTTGGTATTCTTGGGGTCTTGACAAGGTATCTACTGCAAAAATTGTTTGGCCCTGGAGGTGCTGGTGTGACAAGTGACCAAACAATTCTTTACCTTGATCTTCCTTCTAATATGGTTGGTTCTTTCTTGATGGGATGGTGGGGTGTTGTTTTCAAAGCAGATATATCCTATGTGTCAGATTTTTTGGCCATTGGATTGTCAACCGGTTATCTGGGAAGCCTTACTACTTTCAGTGGTTGGAACCAGAAAATGCTCGAACTCAGTGTTCAAGGCCATTGGCCTTTTGCTGTGCTTGGCAATTTAATAGGTTTATTTCTTGCGGCATACTCTATTATTTTTGGGATAGAGACATCTAAGGGTTTCAGGCAGCTTCTTAAAAGGTGTTCAGGGTCTGACATTGCCATCTCTAGAAAGACCTGGAGGGTTGACAGCTACAAGCGCCACTTGGCAGTTTGGGCAGTGTTGCTGGTGATGCTAGGTTGTCTATGGAGTGTGAGTGGAATCTTGGTGAAGGAGGACTTTAGAAATGACAGCAGTGAGACACATCTATGGTTGGCCTGCATCATTGGACCTGTAGGTGTGTGGATCAGGTGGTTCTTAGCTCGACTCAATGGACGTGGATTAGGAAAGACAGGGTTGTTAAAATGGCTTCCATTTGGTACTCTAATTGCAAATGTTTCTGCAGCTTGTATCATGGCAGCCCTTGCTACTGTGGAGAAAGAGGTGAATACCAAGACTTGCAATATCATTGTAACCGGAGTACAATTTGGTTTTTTGGGTTGCCTGAGTACTGTTTCTACCTTCATTTCTGAATTCAATGCAATGAGAGAAAGTAAACACCCCTGGAGAGCATATGCATACGTCATGGTTACGATATGCGCCTCGTTTTGTTTGGGGACCCTAATATATTCTCTCCCAGTTTGGGCAAAGGGATACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRCB

Protein Analysis

456

Amino Acids

49.82

Weight (kDa)

7.94

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRCB PF02537 141 - 257 4.7e-14 CrcB-like protein, Camphor Resistance (CrcB)
CRCB PF02537 328 - 441 1e-17 CrcB-like protein, Camphor Resistance (CrcB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 248
AciI CCGC 1 cut(s) 749
AclWI GGATC 2 cut(s) 174, 1022
AcoI YGGCCR 1 cut(s) 615
AcsI RAATTY 1 cut(s) 1241
AfaI GTAC 7 cut(s) 17, 25, 51, 271, 1090, 1191, 1219
AfiI CCNNNNNNNGG 4 cut(s) 38, 44, 248, 1351
AgeI ACCGGT 1 cut(s) 632
AgsI TTSAA 5 cut(s) 75, 90, 583, 698, 1246
AhdI GACNNNNNGTC 1 cut(s) 142
AjiI CACGTC 1 cut(s) 1046
AjnI CCWGG 3 cut(s) 481, 845, 1271
AluBI AGCT 6 cut(s) 173, 425, 799, 861, 1031, 1115
AluI AGCT 6 cut(s) 173, 425, 799, 861, 1031, 1115
Alw21I GWGCWC 2 cut(s) 106, 175
Alw26I GTCTC 2 cut(s) 770, 962
AlwI GGATC 2 cut(s) 174, 1022
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 5 cut(s) 478, 615, 700, 707, 984
ApeKI GCWGC 4 cut(s) 382, 796, 1112, 1127
ApoI RAATTY 1 cut(s) 1241
AsiGI ACCGGT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 194
Asp718I GGTACC 1 cut(s) 15
AspLEI GCGC 2 cut(s) 870, 1310
AspS9I GGNCC 3 cut(s) 479, 998, 1326
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 3 cut(s) 910, 949, 1165
AvaII GGWCC 2 cut(s) 998, 1326
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BalI TGGCCA 1 cut(s) 617
BanI GGYRCC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 175
BarI GAAGNNNNNNTAC 2 cut(s) 637, 669
Bbv12I GWGCWC 2 cut(s) 106, 175
BbvI GCAGC 4 cut(s) 369, 808, 1124, 1139
BccI CCATC 5 cut(s) 250, 388, 553, 558, 839
BciT130I CCWGG 3 cut(s) 483, 847, 1273
BciVI GTATCC 1 cut(s) 1355
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 770, 962
BfaI CTAG 2 cut(s) 837, 905
BfmI CTRYAG 2 cut(s) 1002, 1110
BfoI RGCGCY 1 cut(s) 871
BfuI GTATCC 1 cut(s) 1355
BisI GCNGC 5 cut(s) 383, 750, 797, 1113, 1128
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 5 cut(s) 384, 751, 798, 1114, 1129
BmcAI AGTACT 1 cut(s) 1219
Bme1390I CCNGG 4 cut(s) 39, 483, 847, 1273
Bme18I GGWCC 2 cut(s) 998, 1326
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 1046
BmgT120I GGNCC 3 cut(s) 479, 998, 1326
BmiI GGNNCC 4 cut(s) 17, 671, 1327, 1328
BmrFI CCNGG 4 cut(s) 39, 483, 847, 1273
BmrI ACTGGG 2 cut(s) 48, 1340
BmsI GCATC 3 cut(s) 284, 891, 999
BmuI ACTGGG 2 cut(s) 48, 1340
BpmI CTGGAG 4 cut(s) 243, 504, 868, 1294
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 19, 481, 1271
BsaWI WCCGGW 2 cut(s) 632, 1184
BsaXI ACNNNNNCTCC 4 cut(s) 216, 246, 910, 940
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 44, 248, 1351
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 54, 1346
Bse3DI GCAATG 3 cut(s) 352, 825, 1257
BseBI CCWGG 3 cut(s) 483, 847, 1273
BseDI CCNNGG 3 cut(s) 19, 481, 1271
BseGI GGATG 5 cut(s) 235, 242, 275, 399, 569
BseLI CCNNNNNNNGG 4 cut(s) 38, 44, 248, 1351
BseMI GCAATG 3 cut(s) 352, 825, 1257
BseMII CTCAG 4 cut(s) 119, 138, 703, 1205
BseNI ACTGG 2 cut(s) 54, 1346
BseXI GCAGC 4 cut(s) 369, 808, 1124, 1139
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 5 cut(s) 480, 617, 702, 709, 986
BshNI GGYRCC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 632
BsiHKAI GWGCWC 2 cut(s) 106, 175
BsiSI CCGG 3 cut(s) 39, 633, 1185
BslFI GGGAC 1 cut(s) 1339
BslI CCNNNNNNNGG 4 cut(s) 38, 44, 248, 1351
BsmAI GTCTC 2 cut(s) 770, 962
BsmFI GGGAC 1 cut(s) 1339
BsnI GGCC 5 cut(s) 480, 617, 702, 709, 986
Bsp1286I GDGCHC 2 cut(s) 106, 175
Bsp143I GATC 4 cut(s) 166, 265, 526, 1014
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 1 cut(s) 749
BspANI GGCC 5 cut(s) 480, 617, 702, 709, 986
BspCNI CTCAG 4 cut(s) 118, 139, 702, 1206
BspLI GGNNCC 4 cut(s) 17, 671, 1327, 1328
BspMAI CTGCAG 1 cut(s) 1114
BspPI GGATC 2 cut(s) 174, 1022
BspT107I GGYRCC 1 cut(s) 15
BsrDI GCAATG 3 cut(s) 352, 825, 1257
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 2 cut(s) 54, 1346
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 19, 481, 1271
BssMI GATC 4 cut(s) 166, 265, 526, 1014
Bst2UI CCWGG 3 cut(s) 483, 847, 1273
Bst4CI ACNGT 5 cut(s) 140, 194, 295, 1141, 1222
BstAPI GCANNNNNTGC 2 cut(s) 281, 1133
BstC8I GCNNGC 1 cut(s) 988
BstDEI CTNAG 7 cut(s) 105, 147, 209, 689, 783, 1027, 1214
BstF5I GGATG 5 cut(s) 235, 242, 275, 399, 569
BstH2I RGCGCY 1 cut(s) 871
BstHHI GCGC 2 cut(s) 870, 1310
BstKTI GATC 4 cut(s) 169, 268, 529, 1017
BstMAI GTCTC 2 cut(s) 770, 962
BstMBI GATC 4 cut(s) 166, 265, 526, 1014
BstMWI GCNNNNNNNGC 5 cut(s) 281, 867, 884, 901, 1133
BstNI CCWGG 3 cut(s) 483, 847, 1273
BstSCI CCNGG 4 cut(s) 37, 481, 845, 1271
BstSFI CTRYAG 2 cut(s) 1002, 1110
BstV1I GCAGC 4 cut(s) 369, 808, 1124, 1139
BstXI CCANNNNNNTGG 1 cut(s) 334
BsuI GTATCC 1 cut(s) 1355
BsuRI GGCC 5 cut(s) 480, 617, 702, 709, 986
BtrI CACGTC 1 cut(s) 1046
BtsCI GGATG 5 cut(s) 235, 242, 275, 399, 569
BtsI GCAGTG 2 cut(s) 894, 970
BtsIMutI CAGTG 6 cut(s) 205, 291, 667, 697, 894, 970
Cac8I GCNNGC 1 cut(s) 988
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 2 cut(s) 870, 1310
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 3 cut(s) 479, 998, 1326
Csp6I GTAC 7 cut(s) 16, 24, 50, 270, 1089, 1190, 1218
CspAI ACCGGT 1 cut(s) 632
CspCI CAANNNNNGTGG 2 cut(s) 1027, 1062
CviAII CATG 3 cut(s) 408, 1123, 1294
CviQI GTAC 7 cut(s) 16, 24, 50, 270, 1089, 1190, 1218
DdeI CTNAG 7 cut(s) 105, 147, 209, 689, 783, 1027, 1214
DpnI GATC 4 cut(s) 168, 267, 528, 1016
DpnII GATC 4 cut(s) 166, 265, 526, 1014
DriI GACNNNNNGTC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 615
Eam1105I GACNNNNNGTC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 2 cut(s) 998, 1326
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 1326
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 3 cut(s) 481, 845, 1271
EcoT22I ATGCAT 1 cut(s) 1288
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 411, 1126, 1297
FalI AAGNNNNNCTT 4 cut(s) 857, 889, 932, 964
FaqI GGGAC 1 cut(s) 1339
FatI CATG 3 cut(s) 407, 1122, 1293
FauNDI CATATG 1 cut(s) 1282
Fnu4HI GCNGC 5 cut(s) 383, 750, 797, 1113, 1128
FokI GGATG 5 cut(s) 229, 242, 262, 406, 576
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 5 cut(s) 383, 750, 797, 1113, 1128
FspBI CTAG 2 cut(s) 837, 905
GlaI GCGC 2 cut(s) 869, 1309
GluI GCNGC 5 cut(s) 383, 750, 797, 1113, 1128
GsuI CTGGAG 4 cut(s) 243, 504, 868, 1294
HaeII RGCGCY 1 cut(s) 871
HaeIII GGCC 5 cut(s) 480, 617, 702, 709, 986
HapII CCGG 3 cut(s) 39, 633, 1185
HhaI GCGC 2 cut(s) 870, 1310
Hin1II CATG 3 cut(s) 411, 1126, 1297
Hin6I GCGC 2 cut(s) 868, 1308
HinP1I GCGC 2 cut(s) 868, 1308
HincII GTYRAC 2 cut(s) 630, 856
HindII GTYRAC 2 cut(s) 630, 856
HinfI GANTC 2 cut(s) 930, 1035
HpaII CCGG 3 cut(s) 39, 633, 1185
HphI GGTGA 3 cut(s) 910, 949, 1165
Hpy166II GTNNAC 4 cut(s) 50, 630, 856, 1265
Hpy188I TCNGA 4 cut(s) 148, 607, 823, 1240
Hpy188III TCNNGA 6 cut(s) 114, 222, 263, 448, 556, 837
Hpy8I GTNNAC 4 cut(s) 50, 630, 856, 1265
HpyAV CCTTC 4 cut(s) 120, 543, 934, 1240
HpyCH4III ACNGT 5 cut(s) 140, 194, 295, 1141, 1222
HpyCH4IV ACGT 2 cut(s) 1045, 1290
HpyCH4V TGCA 9 cut(s) 178, 275, 466, 990, 1100, 1112, 1170, 1250, 1286
HpyF10VI GCNNNNNNNGC 5 cut(s) 281, 867, 884, 901, 1133
HpyF3I CTNAG 7 cut(s) 105, 147, 209, 689, 783, 1027, 1214
HpySE526I ACGT 2 cut(s) 1045, 1290
Hsp92II CATG 3 cut(s) 411, 1126, 1297
HspAI GCGC 2 cut(s) 868, 1308
KflI GGGWCCC 1 cut(s) 1326
KpnI GGTACC 1 cut(s) 19
Kzo9I GATC 4 cut(s) 166, 265, 526, 1014
LmnI GCTCC 1 cut(s) 8
Lsp1109I GCAGC 4 cut(s) 369, 808, 1124, 1139
LweI GCATC 3 cut(s) 284, 891, 999
MaeI CTAG 2 cut(s) 837, 905
MaeII ACGT 2 cut(s) 1045, 1290
MaeIII GTNAC 4 cut(s) 496, 503, 1180, 1297
MalI GATC 4 cut(s) 168, 267, 528, 1016
MboI GATC 4 cut(s) 166, 265, 526, 1014
MboII GAAGA 5 cut(s) 60, 63, 78, 362, 521
MhlI GDGCHC 2 cut(s) 106, 175
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 7 cut(s) 64, 470, 513, 727, 1095, 1193, 1241
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 1029
MmeI TCCRAC 1 cut(s) 647
MnlI CCTC 9 cut(s) 14, 142, 220, 301, 479, 843, 937, 1144, 1321
Mox20I TGGCCA 1 cut(s) 617
Mph1103I ATGCAT 1 cut(s) 1288
MroXI GAANNNNTTC 1 cut(s) 194
MscI TGGCCA 1 cut(s) 617
MseI TTAA 3 cut(s) 731, 804, 1070
MslI CAYNNNNRTG 2 cut(s) 332, 976
Msp20I TGGCCA 1 cut(s) 617
MspI CCGG 3 cut(s) 39, 633, 1185
MspR9I CCNGG 4 cut(s) 39, 483, 847, 1273
MvaI CCWGG 3 cut(s) 483, 847, 1273
MwoI GCNNNNNNNGC 5 cut(s) 281, 867, 884, 901, 1133
NciI CCSGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 1282
NdeII GATC 4 cut(s) 166, 265, 526, 1014
NlaIII CATG 3 cut(s) 411, 1126, 1297
NlaIV GGNNCC 4 cut(s) 17, 671, 1327, 1328
NmuCI GTSAC 2 cut(s) 496, 503
NsiI ATGCAT 1 cut(s) 1288
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 930
PflMI CCANNNNNTGG 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 632
PkrI GCNGC 5 cut(s) 384, 751, 798, 1114, 1129
PleI GAGTC 1 cut(s) 1029
PpsI GAGTC 1 cut(s) 1029
PpuMI RGGWCCY 1 cut(s) 1326
Psp124BI GAGCTC 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 1326
Psp6I CCWGG 3 cut(s) 481, 845, 1271
PspGI CCWGG 3 cut(s) 481, 845, 1271
PspN4I GGNNCC 4 cut(s) 17, 671, 1327, 1328
PspPI GGNCC 3 cut(s) 479, 998, 1326
PspPPI RGGWCCY 1 cut(s) 1326
PstI CTGCAG 1 cut(s) 1114
PstNI CAGNNNCTG 1 cut(s) 821
RsaI GTAC 7 cut(s) 17, 25, 51, 271, 1090, 1191, 1219
RsaNI GTAC 7 cut(s) 16, 24, 50, 270, 1089, 1190, 1218
RseI CAYNNNNRTG 2 cut(s) 332, 976
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 731, 804, 1070
SatI GCNGC 5 cut(s) 383, 750, 797, 1113, 1128
Sau3AI GATC 4 cut(s) 166, 265, 526, 1014
Sau96I GGNCC 3 cut(s) 479, 998, 1326
ScaI AGTACT 1 cut(s) 1219
SchI GAGTC 1 cut(s) 1029
ScrFI CCNGG 4 cut(s) 39, 483, 847, 1273
SduI GDGCHC 2 cut(s) 106, 175
SfaNI GCATC 3 cut(s) 284, 891, 999
SfcI CTRYAG 2 cut(s) 1002, 1110
SinI GGWCC 2 cut(s) 998, 1326
SmiMI CAYNNNNRTG 2 cut(s) 332, 976
Sse9I AATT 7 cut(s) 64, 470, 513, 727, 1095, 1193, 1241
SsiI CCGC 1 cut(s) 749
SspMI CTAG 2 cut(s) 837, 905
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 4 cut(s) 37, 481, 845, 1271
TaaI ACNGT 5 cut(s) 140, 194, 295, 1141, 1222
TaiI ACGT 2 cut(s) 1048, 1293
TaqI TCGA 3 cut(s) 169, 684, 1033
TasI AATT 7 cut(s) 64, 470, 513, 727, 1095, 1193, 1241
TatI WGTACW 2 cut(s) 1189, 1217
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 1 cut(s) 930
Tru1I TTAA 3 cut(s) 731, 804, 1070
Tru9I TTAA 3 cut(s) 731, 804, 1070
TscAI CASTG 6 cut(s) 205, 298, 667, 697, 894, 970
TseFI GTSAC 2 cut(s) 496, 503
TseI GCWGC 4 cut(s) 382, 796, 1112, 1127
Tsp45I GTSAC 2 cut(s) 496, 503
TspDTI ATGAA 3 cut(s) 363, 396, 1222
TspRI CASTG 6 cut(s) 205, 298, 667, 697, 894, 970
Van91I CCANNNNNTGG 1 cut(s) 248
VpaK11BI GGWCC 2 cut(s) 998, 1326
XapI RAATTY 1 cut(s) 1241
XbaI TCTAGA 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 2 cut(s) 837, 905
ZrmI AGTACT 1 cut(s) 1219
Zsp2I ATGCAT 1 cut(s) 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.