Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001325

Physical Location & Seq

Genomic Coordinates Reverse (-)

11174361 .. 11176855

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1121700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTTGGTTCTTTCTTGATGGGGTGGTTCGGTGTCGTTTTCAAAGGAGATCTATCCTATACATCTGATTATTTGGCCATTGGACTGTCAACCGGTTACTTAGAAAGCCTGACAACTTTCAGCGGTTGGAACCAGAAAATGCTTGAAGTTGAAGGCCATTGGGTCTTTGCTCTGCTCGGCTTTCTAATAGGCTTGTTTCTTGCGGCCTACTCCATCATTTTCGGGGTAGAGAAAACAAAGGGTTTTAGGCAGCTTCTTGAGAAGAACTCAGTATGTGGTATCACTAGCTCTAGAAAAAGCTGGAGGGTTGACAGCTACAAGCGTCACTTGGTAGCTTTCATAGTGTTGTTGCTGATGCTAGGTTCTGAATTTAACAGAGACAACAGCAAGGCGCAACTGTGGTTGGGTTACATAGTTGGACCTTTTGGTGTGTGGATCCGGTGGTTCTTAGCCCAGCTTAATGGACGTGGATTAGTGACGGCGGGATGCTTAAAATGGGTTCCATTTGGTACTCTAATTGCCAATATTTCTGCAGCTTGTGTCATGGCTGCCCCGTCTACTATGAAGAGATTGTTTAATGCGATGAGAGAAAGCAAATACCCTTGGAGAGCTTACGCTTACGCCATGGCTATGATATGCACCTCGTTTGGTTTGGGGATCCTGATATATTGTGTACCTATTTGGACAAAGGGATACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRCB

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

9.47

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRCB	PF02537	1 - 76	4.8e-06	CrcB-like protein, Camphor Resistance (CrcB)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41705 AT2G41705 AT2G41705 AT2G41705
fragaria_vesca	FvH4_2g13600 FvH4_2g13600 FvH4_2g26430 FvH4_2g26430 FvH4_2g26430
malus_domestica	MD05G1028200.v1.1 MD05G1028300.v1.1 MD05G1028400.v1.1 MD08G1121700.v1.1 MD08G1168900.v1.1 MD08G1170900.v1.1 MD15G1354200.v1.1 MD15G1354300.v1.1 MD15G1354500.v1.1 MD16G1151600.v1.1
prunus_persica	Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1 Prupe.1G502900_v2.0.a1
pyrus_communis	pycom08g14420 pycom15g31750
rosa_chinensis	RchiOBHm_Chr6g0275211 RchiOBHm_Chr6g0295111
rosa_laevigata	RLG00000011820 RLG00000013487
rosa_multiflora	Rmu_sc0002096.1_g000021 Rmu_ssc0000041.1_g000022
rosa_roxburghii	Rroxscaffold_7G00172720 Rroxscaffold_7G00193550
rosa_rugosa	Rorug06G0090200.1 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200 Rorug06G0249200
rosa_samantha	Rh6AG203500 Rh6AG362200 Rh6BG206400 Rh6BG369900 Rh6CG208900 Rh6CG376500 Rh6DG199000 Rh6DG363000
rosa_wichuraiana	Rw6G017660 Rw6G031610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	557
AciI	CCGC	3 cut(s)	123, 203, 482
AclWI	GGATC	4 cut(s)	430, 443, 652, 665
AcoI	YGGCCR	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	368
AfaI	GTAC	2 cut(s)	511, 675
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	43, 146, 152
AjiI	CACGTC	1 cut(s)	467
AluBI	AGCT	8 cut(s)	253, 288, 300, 315, 335, 457, 536, 611
AluI	AGCT	8 cut(s)	253, 288, 300, 315, 335, 457, 536, 611
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	4 cut(s)	430, 443, 652, 665
AoxI	GGCC	3 cut(s)	75, 154, 204
ApeKI	GCWGC	3 cut(s)	250, 533, 548
ApoI	RAATTY	1 cut(s)	368
AsiGI	ACCGGT	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	77
BamHI	GGATCC	2 cut(s)	435, 657
BbvI	GCAGC	3 cut(s)	262, 535, 545
BccI	CCATC	2 cut(s)	13, 221
BceAI	ACGGC	1 cut(s)	495
BciVI	GTATCC	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	3 cut(s)	285, 291, 359
BfmI	CTRYAG	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	204, 251, 534, 549
BlsI	GCNGC	4 cut(s)	205, 252, 535, 550
Bme18I	GGWCC	1 cut(s)	419
BmgBI	CACGTC	1 cut(s)	467
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	4 cut(s)	131, 437, 501, 659
BmsI	GCATC	2 cut(s)	345, 476
BplI	GAGNNNNNCTC	2 cut(s)	251, 283
BpmI	CTGGAG	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	602, 624
BsaWI	WCCGGW	2 cut(s)	92, 438
Bse118I	RCCGGY	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	602, 624
BseGI	GGATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	262, 535, 545
BseYI	CCCAGC	1 cut(s)	453
BshFI	GGCC	3 cut(s)	77, 156, 206
BshTI	ACCGGT	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	93, 439
BsmAI	GTCTC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	77, 156, 206
Bsp143I	GATC	3 cut(s)	49, 435, 657
Bsp19I	CCATGG	1 cut(s)	624
BspACI	CCGC	3 cut(s)	123, 203, 482
BspANI	GGCC	3 cut(s)	77, 156, 206
BspCNI	CTCAG	1 cut(s)	281
BspLI	GGNNCC	4 cut(s)	131, 437, 501, 659
BspMAI	CTGCAG	1 cut(s)	535
BspPI	GGATC	4 cut(s)	430, 443, 652, 665
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	602, 624
BssMI	GATC	3 cut(s)	49, 435, 657
BssT1I	CCWWGG	2 cut(s)	602, 624
Bst4CI	ACNGT	2 cut(s)	87, 399
Bst6I	CTCTTC	1 cut(s)	560
BstDEI	CTNAG	3 cut(s)	100, 268, 448
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	3 cut(s)	52, 438, 660
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	49, 435, 657
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	262, 535, 545
BstX2I	RGATCY	3 cut(s)	49, 435, 657
BstXI	CCANNNNNNTGG	1 cut(s)	461
BstYI	RGATCY	3 cut(s)	49, 435, 657
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	3 cut(s)	77, 156, 206
BtgI	CCRYGG	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	596
BtrI	CACGTC	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	2 cut(s)	510, 674
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	2 cut(s)	544, 625
CviQI	GTAC	2 cut(s)	510, 674
DdeI	CTNAG	3 cut(s)	100, 268, 448
DpnI	GATC	3 cut(s)	51, 437, 659
DpnII	GATC	3 cut(s)	49, 435, 657
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	602, 624
Eco47I	GGWCC	1 cut(s)	419
EcoT14I	CCWWGG	2 cut(s)	602, 624
ErhI	CCWWGG	2 cut(s)	602, 624
FaeI	CATG	2 cut(s)	547, 628
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	2 cut(s)	543, 624
FauI	CCCGC	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	557
Fnu4HI	GCNGC	4 cut(s)	204, 251, 534, 549
FokI	GGATG	1 cut(s)	498
Fsp4HI	GCNGC	4 cut(s)	204, 251, 534, 549
FspBI	CTAG	3 cut(s)	285, 291, 359
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	4 cut(s)	204, 251, 534, 549
GsaI	CCCAGC	1 cut(s)	457
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	3 cut(s)	77, 156, 206
HapII	CCGG	2 cut(s)	93, 439
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	2 cut(s)	547, 628
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	2 cut(s)	90, 310
HindII	GTYRAC	2 cut(s)	90, 310
HpaII	CCGG	2 cut(s)	93, 439
Hpy166II	GTNNAC	4 cut(s)	90, 310, 558, 674
Hpy188I	TCNGA	2 cut(s)	67, 367
Hpy188III	TCNNGA	4 cut(s)	16, 257, 291, 661
Hpy8I	GTNNAC	4 cut(s)	90, 310, 558, 674
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	87, 399
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	533, 639
HpyF3I	CTNAG	3 cut(s)	100, 268, 448
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	2 cut(s)	547, 628
HspAI	GCGC	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	49, 435, 657
LpnPI	CCDG	7 cut(s)	106, 122, 146, 286, 452, 467, 674
Lsp1109I	GCAGC	3 cut(s)	262, 535, 545
LweI	GCATC	2 cut(s)	345, 476
MaeI	CTAG	3 cut(s)	285, 291, 359
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	4 cut(s)	95, 323, 407, 475
MalI	GATC	3 cut(s)	51, 437, 659
MboI	GATC	3 cut(s)	49, 435, 657
MboII	GAAGA	2 cut(s)	274, 577
MflI	RGATCY	3 cut(s)	49, 435, 657
MlsI	TGGCCA	1 cut(s)	77
MluCI	AATT	2 cut(s)	368, 516
MluNI	TGGCCA	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	107, 397
MnlI	CCTC	2 cut(s)	297, 652
Mox20I	TGGCCA	1 cut(s)	77
MscI	TGGCCA	1 cut(s)	77
MseI	TTAA	4 cut(s)	372, 459, 491, 576
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	93, 439
NcoI	CCATGG	1 cut(s)	624
NdeII	GATC	3 cut(s)	49, 435, 657
NlaIII	CATG	2 cut(s)	547, 628
NlaIV	GGNNCC	4 cut(s)	131, 437, 501, 659
NmeAIII	GCCGAG	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	323, 475
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	205, 252, 535, 550
PspFI	CCCAGC	1 cut(s)	453
PspN4I	GGNNCC	4 cut(s)	131, 437, 501, 659
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	3 cut(s)	49, 435, 657
RsaI	GTAC	2 cut(s)	511, 675
RsaNI	GTAC	2 cut(s)	510, 674
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	4 cut(s)	372, 459, 491, 576
SatI	GCNGC	4 cut(s)	204, 251, 534, 549
Sau3AI	GATC	3 cut(s)	49, 435, 657
Sau96I	GGNCC	1 cut(s)	419
SfaNI	GCATC	2 cut(s)	345, 476
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	368, 516
SsiI	CCGC	3 cut(s)	123, 203, 482
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	3 cut(s)	285, 291, 359
StyI	CCWWGG	2 cut(s)	602, 624
TaaI	ACNGT	2 cut(s)	87, 399
TaiI	ACGT	1 cut(s)	469
TasI	AATT	2 cut(s)	368, 516
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	4 cut(s)	372, 459, 491, 576
Tru9I	TTAA	4 cut(s)	372, 459, 491, 576
TseFI	GTSAC	2 cut(s)	323, 475
TseI	GCWGC	3 cut(s)	250, 533, 548
Tsp45I	GTSAC	2 cut(s)	323, 475
TspDTI	ATGAA	2 cut(s)	328, 578
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	557
XspI	CTAG	3 cut(s)	285, 291, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.